Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36602 * 126.58114 * 2 1 4 4 C 1.47527 * 125.76785 * 359.75473 * 3 2 1 5 5 O 1.21597 * 120.00290 * 354.99101 * 4 3 2 6 6 N 1.34780 * 119.99855 * 174.99859 * 4 3 2 7 7 C 1.46921 * 120.63044 * 4.01870 * 6 4 3 8 8 C 1.52763 * 109.01011 * 233.58867 * 7 6 4 9 9 C 1.53042 * 109.38120 * 305.58841 * 8 7 6 10 10 C 1.53046 * 109.53756 * 61.24072 * 9 8 7 11 11 H 1.08998 * 109.52428 * 58.59885 * 10 9 8 12 12 N 1.46497 * 109.49538 * 178.68721 * 10 9 8 13 13 C 1.46498 * 120.00674 * 59.83474 * 12 10 9 14 14 C 1.36942 * 119.99589 * 239.83516 * 12 10 9 15 15 H 1.07998 * 120.00008 * 321.07637 * 14 12 10 16 16 C 1.38812 * 119.99996 * 141.08585 * 14 12 10 17 17 N 1.31618 * 120.00026 * 158.00536 * 16 14 12 18 18 Si 1.86805 * 119.99941 * 337.99499 * 16 14 12 19 19 H 1.48500 * 109.46630 * 95.24954 * 18 16 14 20 20 H 1.48497 * 109.47190 * 215.25114 * 18 16 14 21 21 H 1.48500 * 109.46985 * 335.25462 * 18 16 14 22 22 C 1.46927 * 120.62743 * 184.30248 * 6 4 3 23 23 N 1.34399 * 108.46164 * 180.02562 * 3 2 1 24 24 N 1.28763 * 109.52164 * 359.97438 * 23 3 2 25 25 N 1.34808 * 126.58092 * 180.02562 * 2 1 3 26 26 C 1.46500 * 126.59413 * 359.96250 * 25 2 1 27 27 C 1.53004 * 109.47127 * 119.99866 * 26 25 2 28 28 C 1.52996 * 109.46921 * 239.99365 * 26 25 2 29 29 H 1.08997 * 109.46903 * 89.97752 * 1 2 3 30 30 H 1.09003 * 109.47052 * 209.98087 * 1 2 3 31 31 H 1.09004 * 109.47166 * 329.97938 * 1 2 3 32 32 H 1.08999 * 109.58863 * 353.42183 * 7 6 4 33 33 H 1.08997 * 109.58805 * 113.84863 * 7 6 4 34 34 H 1.08997 * 109.56737 * 185.55393 * 8 7 6 35 35 H 1.09000 * 109.38771 * 65.50807 * 8 7 6 36 36 H 1.09003 * 109.46160 * 301.22018 * 9 8 7 37 37 H 1.08993 * 109.46187 * 181.25689 * 9 8 7 38 38 H 1.09000 * 109.46896 * 84.90523 * 13 12 10 39 39 H 1.08996 * 109.47331 * 204.90756 * 13 12 10 40 40 H 1.09004 * 109.47062 * 324.91016 * 13 12 10 41 41 H 0.97003 * 120.00121 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58397 * 246.15125 * 22 6 4 43 43 H 1.08999 * 109.59015 * 6.57686 * 22 6 4 44 44 H 1.08996 * 109.46838 * 359.97438 * 26 25 2 45 45 H 1.09001 * 109.47335 * 59.99692 * 27 26 25 46 46 H 1.09002 * 109.47181 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.46830 * 300.00242 * 27 26 25 48 48 H 1.08999 * 109.47398 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47608 * 299.99826 * 28 26 25 50 50 H 1.09000 * 109.47178 * 60.00533 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0051 5 8 0.6901 2.7638 -0.1018 6 7 2.7771 3.4977 0.0972 7 6 4.2160 3.2023 0.1261 8 6 4.8338 3.8572 1.3603 9 6 4.4981 5.3504 1.3646 10 6 2.9799 5.5335 1.4273 11 1 2.5916 5.0514 2.3244 12 7 2.6609 6.9628 1.4630 13 6 3.0799 7.8347 0.3628 14 6 1.9709 7.4840 2.5249 15 1 1.1631 6.9234 2.9715 16 6 2.3097 8.7330 3.0271 17 7 1.4304 9.4237 3.7215 18 14 4.0136 9.4333 2.7175 19 1 3.9753 10.3206 1.5274 20 1 4.4509 10.2136 3.9029 21 1 4.9690 8.3224 2.4762 22 6 2.3414 4.8979 0.1882 23 7 3.5984 0.6789 -0.0006 24 7 3.6299 -0.6083 -0.0004 25 7 2.3104 -1.0825 -0.0005 26 6 1.8863 -2.4848 -0.0003 27 6 2.4284 -3.1817 -1.2500 28 6 2.4299 -3.1818 1.2485 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 4.3668 2.1238 0.1725 33 1 4.6891 3.6012 -0.7711 34 1 5.9158 3.7277 1.3393 35 1 4.4288 3.3908 2.2584 36 1 4.8822 5.8116 0.4547 37 1 4.9569 5.8232 2.2328 38 1 2.3386 7.7944 -0.4353 39 1 3.1690 8.8590 0.7246 40 1 4.0440 7.4993 -0.0196 41 1 1.6670 10.2966 4.0721 42 1 2.6584 5.4379 -0.7039 43 1 1.2556 4.9379 0.2754 44 1 0.7975 -2.5351 0.0007 45 1 3.5173 -3.1313 -1.2506 46 1 2.1133 -4.2252 -1.2496 47 1 2.0413 -2.6851 -2.1396 48 1 2.1141 -4.2250 1.2489 49 1 3.5187 -3.1315 1.2478 50 1 2.0437 -2.6854 2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027630212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = 96.132768 kcal Electronic energy + Delta-G solvation = -30207.888806 eV Core-core repulsion = 26273.729547 eV Total energy + Delta-G solvation = -3934.159259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52210 -39.66443 -37.45923 -36.80049 -35.17777 -33.27028 -32.31024 -31.48834 -31.23036 -29.33690 -27.99711 -27.91654 -26.09541 -25.31022 -24.34326 -23.68666 -22.43623 -21.51875 -20.58079 -19.67808 -18.71405 -17.48802 -16.76068 -16.41322 -16.40528 -15.91472 -15.30426 -14.97856 -14.82628 -14.52554 -14.10051 -13.90761 -13.76356 -13.69932 -13.42929 -13.39050 -13.29179 -12.85140 -12.80993 -12.71323 -12.47700 -12.35549 -12.24802 -12.12065 -12.09445 -12.02170 -11.72550 -11.42955 -10.97985 -10.88034 -10.44989 -10.41529 -10.31848 -10.06980 -10.04056 -9.88636 -9.56679 -9.51359 -9.26211 -8.58308 -8.22710 -6.74648 -5.95697 -3.38711 0.96299 1.63835 1.73600 3.16599 3.35115 3.39921 3.49748 3.56040 3.84346 3.97599 4.21576 4.32615 4.35245 4.55559 4.56456 4.77962 4.93615 4.95064 5.03771 5.11194 5.13259 5.19976 5.24648 5.31875 5.38557 5.40799 5.49717 5.53976 5.58023 5.64791 5.72052 5.75179 5.89711 6.02885 6.17079 6.22406 6.24053 6.35727 6.40635 6.49051 6.52976 6.61522 6.76289 6.83708 6.97355 7.01144 7.62432 7.85636 8.09763 8.34464 8.44648 9.02583 9.74392 10.15456 11.19744 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.002701 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.447046 B =10362.481671 C =10771.090697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.122 3.878 3 C -0.094 4.094 4 C 0.599 3.401 5 O -0.541 6.541 6 N -0.587 5.587 7 C 0.068 3.932 8 C -0.127 4.127 9 C -0.139 4.139 10 C 0.168 3.832 11 H 0.074 0.926 12 N -0.602 5.602 13 C 0.108 3.892 14 C -0.268 4.268 15 H 0.079 0.921 16 C 0.035 3.965 17 N -0.900 5.900 18 Si 0.881 3.119 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.267 1.267 22 C 0.100 3.900 23 N -0.204 5.204 24 N -0.069 5.069 25 N -0.356 5.356 26 C 0.143 3.857 27 C -0.162 4.162 28 C -0.164 4.164 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.015 0.985 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -27.365 -9.610 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.233 4.233 4 C 0.385 3.615 5 O -0.418 6.418 6 N -0.318 5.318 7 C -0.055 4.055 8 C -0.166 4.166 9 C -0.178 4.178 10 C 0.060 3.940 11 H 0.092 0.908 12 N -0.325 5.325 13 C -0.036 4.036 14 C -0.396 4.396 15 H 0.096 0.904 16 C -0.165 4.165 17 N -0.542 5.542 18 Si 0.712 3.288 19 H -0.215 1.215 20 H -0.231 1.231 21 H -0.192 1.192 22 C -0.023 4.023 23 N -0.076 5.076 24 N -0.047 5.047 25 N -0.143 5.143 26 C 0.042 3.958 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.241 -27.493 -9.561 29.288 hybrid contribution 0.184 0.834 -0.093 0.859 sum 3.425 -26.658 -9.653 28.558 Atomic orbital electron populations 1.20711 0.84715 1.05307 1.04640 1.21899 0.96258 0.86215 0.97190 1.21291 0.88765 0.95528 1.17689 1.16775 0.85361 0.82352 0.77050 1.90762 1.16040 1.83249 1.51751 1.47931 1.06861 1.06685 1.70370 1.22751 0.79168 1.05671 0.97950 1.21787 1.00090 0.96592 0.98159 1.22157 0.99078 0.94631 1.01976 1.20748 0.91811 0.85691 0.95799 0.90791 1.44033 1.65845 1.02484 1.20140 1.21334 0.96324 0.95064 0.90899 1.18796 1.10361 1.02261 1.08225 0.90377 1.25514 0.97204 0.97322 0.96488 1.69876 1.33358 1.12246 1.38671 0.86864 0.87463 0.78610 0.75908 1.21534 1.23093 1.19174 1.22355 1.01774 0.78416 0.99767 1.74082 1.18666 1.03508 1.11352 1.81921 0.96559 1.03747 1.22477 1.50582 1.06241 1.07177 1.50306 1.21652 1.00528 0.75305 0.98303 1.22155 1.03219 1.00847 0.95786 1.22166 1.03253 1.00867 0.95852 0.89019 0.90862 0.86855 0.84399 0.92179 0.91362 0.91938 0.92592 0.91633 0.96650 0.93318 0.95298 0.92736 0.91951 0.88881 0.87243 0.90682 0.89922 0.91704 0.89925 0.90653 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.35 36.00 0.34 -0.46 16 2 C 0.12 1.36 7.02 -81.88 -0.57 0.78 16 3 C -0.09 -1.33 6.78 -83.55 -0.57 -1.89 16 4 C 0.60 10.01 7.69 -12.47 -0.10 9.92 16 5 O -0.54 -10.03 14.22 5.28 0.08 -9.96 16 6 N -0.59 -9.83 2.98 -174.26 -0.52 -10.35 16 7 C 0.07 1.00 6.29 -3.93 -0.02 0.97 16 8 C -0.13 -1.90 6.07 -26.83 -0.16 -2.06 16 9 C -0.14 -2.51 5.10 -26.69 -0.14 -2.64 16 10 C 0.17 3.46 2.75 -67.81 -0.19 3.27 16 11 H 0.07 1.64 7.89 -51.93 -0.41 1.23 16 12 N -0.60 -14.59 2.35 -173.34 -0.41 -15.00 16 13 C 0.11 2.41 8.34 59.85 0.50 2.91 16 14 C -0.27 -7.64 9.82 -15.06 -0.15 -7.79 16 15 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 16 C 0.04 1.03 5.27 -17.43 -0.09 0.94 16 17 N -0.90 -27.91 13.97 55.49 0.78 -27.14 16 18 Si 0.88 22.56 25.10 -169.99 -4.27 18.29 16 19 H -0.29 -7.17 6.68 56.52 0.38 -6.79 16 20 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 23 N -0.20 -2.84 8.63 32.85 0.28 -2.56 16 24 N -0.07 -0.85 13.67 60.35 0.82 -0.02 16 25 N -0.36 -3.43 3.28 -50.41 -0.17 -3.60 16 26 C 0.14 0.78 3.68 -67.93 -0.25 0.53 16 27 C -0.16 -0.73 9.47 37.16 0.35 -0.38 16 28 C -0.16 -0.78 9.47 37.16 0.35 -0.42 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 31 H 0.11 1.22 6.56 -51.93 -0.34 0.88 16 32 H 0.14 1.97 3.60 -131.91 -0.47 1.49 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.98 6.75 -51.93 -0.35 0.63 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.17 3.69 -51.93 -0.19 0.98 16 40 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 43 H 0.09 1.93 7.03 -51.93 -0.36 1.57 16 44 H 0.11 0.36 6.79 -51.93 -0.35 0.01 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -33.96 385.49 -6.55 -40.51 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.24 Total: -1.53 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.72 Total: 5.54 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.79 Total: -58.66 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.27 Total: 18.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.96 -6.55 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027630212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.639 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds