Wall clock time and date at job start Tue Mar 31 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36602 * 126.58114 * 2 1 4 4 C 1.47527 * 125.76785 * 359.75473 * 3 2 1 5 5 O 1.21597 * 120.00290 * 354.99101 * 4 3 2 6 6 N 1.34780 * 119.99855 * 174.99859 * 4 3 2 7 7 C 1.46921 * 120.63044 * 4.01870 * 6 4 3 8 8 C 1.52763 * 109.01011 * 233.58867 * 7 6 4 9 9 C 1.53042 * 109.38120 * 305.58841 * 8 7 6 10 10 C 1.53046 * 109.53756 * 61.24072 * 9 8 7 11 11 H 1.08998 * 109.52428 * 58.59885 * 10 9 8 12 12 N 1.46497 * 109.49538 * 178.68721 * 10 9 8 13 13 C 1.46498 * 120.00674 * 59.83474 * 12 10 9 14 14 C 1.36942 * 119.99589 * 239.83516 * 12 10 9 15 15 H 1.07998 * 120.00008 * 321.07637 * 14 12 10 16 16 C 1.38812 * 119.99996 * 141.08585 * 14 12 10 17 17 N 1.31618 * 120.00026 * 158.00536 * 16 14 12 18 18 Si 1.86805 * 119.99941 * 337.99499 * 16 14 12 19 19 H 1.48500 * 109.46630 * 95.24954 * 18 16 14 20 20 H 1.48497 * 109.47190 * 215.25114 * 18 16 14 21 21 H 1.48500 * 109.46985 * 335.25462 * 18 16 14 22 22 C 1.46927 * 120.62743 * 184.30248 * 6 4 3 23 23 N 1.34399 * 108.46164 * 180.02562 * 3 2 1 24 24 N 1.28763 * 109.52164 * 359.97438 * 23 3 2 25 25 N 1.34808 * 126.58092 * 180.02562 * 2 1 3 26 26 C 1.46500 * 126.59413 * 359.96250 * 25 2 1 27 27 C 1.53004 * 109.47127 * 119.99866 * 26 25 2 28 28 C 1.52996 * 109.46921 * 239.99365 * 26 25 2 29 29 H 1.08997 * 109.46903 * 89.97752 * 1 2 3 30 30 H 1.09003 * 109.47052 * 209.98087 * 1 2 3 31 31 H 1.09004 * 109.47166 * 329.97938 * 1 2 3 32 32 H 1.08999 * 109.58863 * 353.42183 * 7 6 4 33 33 H 1.08997 * 109.58805 * 113.84863 * 7 6 4 34 34 H 1.08997 * 109.56737 * 185.55393 * 8 7 6 35 35 H 1.09000 * 109.38771 * 65.50807 * 8 7 6 36 36 H 1.09003 * 109.46160 * 301.22018 * 9 8 7 37 37 H 1.08993 * 109.46187 * 181.25689 * 9 8 7 38 38 H 1.09000 * 109.46896 * 84.90523 * 13 12 10 39 39 H 1.08996 * 109.47331 * 204.90756 * 13 12 10 40 40 H 1.09004 * 109.47062 * 324.91016 * 13 12 10 41 41 H 0.97003 * 120.00121 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58397 * 246.15125 * 22 6 4 43 43 H 1.08999 * 109.59015 * 6.57686 * 22 6 4 44 44 H 1.08996 * 109.46838 * 359.97438 * 26 25 2 45 45 H 1.09001 * 109.47335 * 59.99692 * 27 26 25 46 46 H 1.09002 * 109.47181 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.46830 * 300.00242 * 27 26 25 48 48 H 1.08999 * 109.47398 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47608 * 299.99826 * 28 26 25 50 50 H 1.09000 * 109.47178 * 60.00533 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0051 5 8 0.6901 2.7638 -0.1018 6 7 2.7771 3.4977 0.0972 7 6 4.2160 3.2023 0.1261 8 6 4.8338 3.8572 1.3603 9 6 4.4981 5.3504 1.3646 10 6 2.9799 5.5335 1.4273 11 1 2.5916 5.0514 2.3244 12 7 2.6609 6.9628 1.4630 13 6 3.0799 7.8347 0.3628 14 6 1.9709 7.4840 2.5249 15 1 1.1631 6.9234 2.9715 16 6 2.3097 8.7330 3.0271 17 7 1.4304 9.4237 3.7215 18 14 4.0136 9.4333 2.7175 19 1 3.9753 10.3206 1.5274 20 1 4.4509 10.2136 3.9029 21 1 4.9690 8.3224 2.4762 22 6 2.3414 4.8979 0.1882 23 7 3.5984 0.6789 -0.0006 24 7 3.6299 -0.6083 -0.0004 25 7 2.3104 -1.0825 -0.0005 26 6 1.8863 -2.4848 -0.0003 27 6 2.4284 -3.1817 -1.2500 28 6 2.4299 -3.1818 1.2485 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 4.3668 2.1238 0.1725 33 1 4.6891 3.6012 -0.7711 34 1 5.9158 3.7277 1.3393 35 1 4.4288 3.3908 2.2584 36 1 4.8822 5.8116 0.4547 37 1 4.9569 5.8232 2.2328 38 1 2.3386 7.7944 -0.4353 39 1 3.1690 8.8590 0.7246 40 1 4.0440 7.4993 -0.0196 41 1 1.6670 10.2966 4.0721 42 1 2.6584 5.4379 -0.7039 43 1 1.2556 4.9379 0.2754 44 1 0.7975 -2.5351 0.0007 45 1 3.5173 -3.1313 -1.2506 46 1 2.1133 -4.2252 -1.2496 47 1 2.0413 -2.6851 -2.1396 48 1 2.1141 -4.2250 1.2489 49 1 3.5187 -3.1315 1.2478 50 1 2.0437 -2.6854 2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027630212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:39 Heat of formation + Delta-G solvation = 73.513468 kcal Electronic energy + Delta-G solvation = -30208.869652 eV Core-core repulsion = 26273.729547 eV Total energy + Delta-G solvation = -3935.140105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.43915 -41.00016 -38.96953 -37.45896 -36.82075 -34.19672 -33.97432 -33.11659 -32.25469 -30.79284 -28.91517 -28.26079 -28.04631 -26.58990 -25.56217 -24.97411 -23.56177 -23.02307 -21.33737 -21.04392 -20.06019 -18.93596 -18.36149 -17.45067 -17.33897 -17.31475 -17.01215 -16.22166 -15.77102 -15.53153 -15.48781 -15.28144 -15.08938 -14.98762 -14.43126 -14.30201 -14.23102 -14.07316 -14.01485 -13.95647 -13.86510 -13.68410 -13.23059 -13.17819 -13.08030 -12.83367 -12.65710 -12.52401 -12.49367 -12.16472 -12.07634 -12.03266 -11.88196 -11.69230 -11.35802 -11.33031 -11.15599 -10.86095 -10.62080 -10.25575 -9.67716 -8.73129 -8.21912 -5.63050 0.09727 0.55499 1.01646 1.31428 1.41717 1.54744 1.89693 2.18787 2.41769 3.04505 3.05693 3.25007 3.33806 3.49779 3.66415 3.82245 3.92304 3.98007 4.01128 4.09775 4.12830 4.27056 4.34397 4.38480 4.53927 4.58978 4.61698 4.65321 4.65873 4.70055 4.71827 4.76945 4.80647 4.83883 4.88034 4.99883 5.04220 5.06709 5.12256 5.19805 5.20090 5.29576 5.39793 5.45072 5.53311 5.67656 5.91524 6.15439 6.35552 6.83533 6.95466 7.10234 7.58801 8.01184 8.97797 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.002701 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.447046 B =10362.481671 C =10771.090697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.124 4.124 4 C 0.595 3.405 5 O -0.569 6.569 6 N -0.592 5.592 7 C 0.069 3.931 8 C -0.119 4.119 9 C -0.130 4.130 10 C 0.168 3.832 11 H 0.044 0.956 12 N -0.614 5.614 13 C 0.106 3.894 14 C -0.264 4.264 15 H 0.032 0.968 16 C -0.021 4.021 17 N -0.949 5.949 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.309 1.309 21 H -0.251 1.251 22 C 0.115 3.885 23 N -0.218 5.218 24 N -0.078 5.078 25 N -0.341 5.341 26 C 0.131 3.869 27 C -0.158 4.158 28 C -0.161 4.161 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.062 0.938 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.141 0.859 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.058 0.942 48 H 0.113 0.887 49 H 0.059 0.941 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -30.082 -11.392 32.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.007 4.007 3 C -0.263 4.263 4 C 0.382 3.618 5 O -0.448 6.448 6 N -0.323 5.323 7 C -0.053 4.053 8 C -0.157 4.157 9 C -0.169 4.169 10 C 0.061 3.939 11 H 0.062 0.938 12 N -0.338 5.338 13 C -0.038 4.038 14 C -0.393 4.393 15 H 0.050 0.950 16 C -0.217 4.217 17 N -0.593 5.593 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.237 1.237 21 H -0.175 1.175 22 C -0.009 4.009 23 N -0.089 5.089 24 N -0.057 5.057 25 N -0.129 5.129 26 C 0.032 3.968 27 C -0.216 4.216 28 C -0.218 4.218 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.158 0.842 45 H 0.078 0.922 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.131 0.869 49 H 0.078 0.922 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.042 -30.277 -11.374 32.733 hybrid contribution -0.510 1.473 0.456 1.624 sum 4.532 -28.804 -10.918 31.135 Atomic orbital electron populations 1.20800 0.82751 1.05901 1.05713 1.22231 0.97326 0.85799 0.95322 1.21057 0.89800 0.94794 1.20621 1.17148 0.84975 0.83436 0.76226 1.90739 1.17162 1.83945 1.52953 1.47988 1.08002 1.05716 1.70576 1.22915 0.77670 1.06386 0.98355 1.21746 1.01997 0.94040 0.97943 1.22019 0.96036 0.96930 1.01905 1.20764 0.94137 0.83532 0.95478 0.93772 1.44088 1.65950 1.04085 1.19694 1.21416 0.98306 0.93810 0.90239 1.18608 1.09553 1.01994 1.09185 0.94980 1.26177 1.00891 0.97847 0.96832 1.70010 1.35415 1.12987 1.40905 0.85731 0.82120 0.78274 0.75918 1.19905 1.23723 1.17502 1.21952 0.99814 0.80064 0.99099 1.73954 1.18691 1.04273 1.12020 1.81824 0.98167 1.03111 1.22574 1.50916 1.05026 1.08409 1.48500 1.22229 1.02443 0.72980 0.99168 1.22160 1.02160 1.02428 0.94859 1.22177 1.02192 1.02487 0.94970 0.87544 0.87024 0.89448 0.83582 0.90576 0.88232 0.92982 0.91079 0.93196 0.95633 0.94922 0.91931 0.92681 0.90755 0.91836 0.84171 0.92226 0.86929 0.92249 0.86889 0.92217 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.35 71.23 0.67 -0.73 16 2 C 0.13 2.77 7.02 41.72 0.29 3.06 16 3 C -0.12 -3.46 6.78 40.82 0.28 -3.18 16 4 C 0.59 20.21 7.69 86.69 0.67 20.88 16 5 O -0.57 -21.89 14.22 -4.02 -0.06 -21.94 16 6 N -0.59 -19.78 2.98 -823.50 -2.45 -22.23 16 7 C 0.07 1.91 6.29 86.22 0.54 2.45 16 8 C -0.12 -3.31 6.07 30.53 0.19 -3.13 16 9 C -0.13 -4.46 5.10 30.62 0.16 -4.31 16 10 C 0.17 7.03 2.75 45.07 0.12 7.15 16 11 H 0.04 2.07 7.89 -2.39 -0.02 2.06 16 12 N -0.61 -30.08 2.35 -702.34 -1.65 -31.73 16 13 C 0.11 4.56 8.34 127.77 1.07 5.62 16 14 C -0.26 -15.67 9.82 84.03 0.82 -14.85 16 15 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 16 C -0.02 -1.26 5.27 84.86 0.45 -0.81 16 17 N -0.95 -61.00 13.97 21.65 0.30 -60.70 16 18 Si 0.95 46.94 25.10 68.60 1.72 48.66 16 19 H -0.27 -12.69 6.68 99.48 0.66 -12.03 16 20 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 21 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.12 4.37 5.78 86.36 0.50 4.87 16 23 N -0.22 -5.85 8.63 -49.99 -0.43 -6.29 16 24 N -0.08 -1.83 13.67 37.02 0.51 -1.33 16 25 N -0.34 -5.91 3.28 -313.40 -1.03 -6.94 16 26 C 0.13 1.01 3.68 44.99 0.17 1.18 16 27 C -0.16 -0.95 9.47 71.98 0.68 -0.27 16 28 C -0.16 -1.08 9.47 71.98 0.68 -0.40 16 29 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 0.78 7.18 -2.39 -0.02 0.76 16 31 H 0.09 1.87 6.56 -2.38 -0.02 1.85 16 32 H 0.15 3.97 3.60 -105.88 -0.38 3.58 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.24 6.75 -2.39 -0.02 2.23 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.03 1.51 3.69 -2.39 -0.01 1.50 16 40 H 0.06 2.26 6.47 -2.38 -0.02 2.24 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 42 H 0.07 2.63 7.51 -2.39 -0.02 2.61 16 43 H 0.06 2.78 7.03 -2.39 -0.02 2.76 16 44 H 0.14 0.28 6.79 -2.39 -0.02 0.26 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -78.22 385.49 4.71 -73.51 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.53 Total: 11.44 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.27 Total: 17.54 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -4.75 Total: -129.21 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.72 Total: 48.66 kcal Total: -78.22 4.71 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027630212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.022 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds