Wall clock time and date at job start Tue Mar 31 2020 20:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47304 * 2 1 4 4 C 1.53001 * 109.46974 * 120.00134 * 2 1 3 5 5 C 1.53000 * 109.46810 * 65.00072 * 4 2 1 6 6 N 1.46502 * 109.46951 * 179.97438 * 5 4 2 7 7 C 1.34813 * 126.59741 * 125.24764 * 6 5 4 8 8 C 1.36593 * 106.83898 * 180.13069 * 7 6 5 9 9 C 1.47523 * 125.76922 * 179.89600 * 8 7 6 10 10 O 1.21596 * 119.99763 * 359.70921 * 9 8 7 11 11 N 1.34773 * 120.00227 * 179.71729 * 9 8 7 12 12 C 1.46497 * 120.00083 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47269 * 185.65581 * 12 11 9 14 14 H 1.09000 * 109.99510 * 304.84298 * 13 12 11 15 15 C 1.54326 * 109.88078 * 65.93746 * 13 12 11 16 16 C 1.55444 * 102.96840 * 141.61473 * 15 13 12 17 17 C 1.54917 * 101.44837 * 324.51541 * 16 15 13 18 18 N 1.47017 * 109.88305 * 183.74839 * 13 12 11 19 19 C 1.36936 * 125.64982 * 61.62433 * 18 13 12 20 20 H 1.07999 * 120.00294 * 14.68119 * 19 18 13 21 21 C 1.38820 * 119.99597 * 194.68661 * 19 18 13 22 22 N 1.31615 * 120.00396 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99451 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47379 * 60.00099 * 23 21 19 25 25 H 1.48504 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47376 * 299.99855 * 23 21 19 27 27 N 1.34399 * 108.46061 * 359.63501 * 8 7 6 28 28 N 1.28763 * 109.52347 * 0.22377 * 27 8 7 29 29 H 1.09003 * 109.47006 * 59.99704 * 1 2 3 30 30 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 300.00248 * 1 2 3 32 32 H 1.09004 * 109.46866 * 240.00217 * 2 1 3 33 33 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47148 * 300.00391 * 3 2 1 35 35 H 1.09004 * 109.46982 * 60.00288 * 3 2 1 36 36 H 1.08991 * 109.46823 * 305.00075 * 4 2 1 37 37 H 1.09000 * 109.46872 * 184.99687 * 4 2 1 38 38 H 1.09004 * 109.47347 * 60.00012 * 5 4 2 39 39 H 1.09000 * 109.47089 * 299.99482 * 5 4 2 40 40 H 1.07999 * 126.57989 * 359.97438 * 7 6 5 41 41 H 0.97008 * 119.99940 * 359.97438 * 11 9 8 42 42 H 1.09002 * 109.47158 * 65.65709 * 12 11 9 43 43 H 1.08996 * 109.47264 * 305.65474 * 12 11 9 44 44 H 1.08998 * 110.71800 * 259.97694 * 15 13 12 45 45 H 1.08997 * 110.72125 * 23.25220 * 15 13 12 46 46 H 1.08998 * 111.11882 * 206.46712 * 16 15 13 47 47 H 1.08996 * 111.01683 * 82.51954 * 16 15 13 48 48 H 1.08998 * 110.36802 * 278.11252 * 17 16 15 49 49 H 1.09007 * 110.36326 * 155.89781 * 17 16 15 50 50 H 0.96991 * 120.00137 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 7 2.1240 -2.8863 2.3837 7 6 1.3881 -3.6096 3.2513 8 6 2.2449 -4.0664 4.2120 9 6 1.8755 -4.9028 5.3698 10 8 0.7184 -5.2392 5.5322 11 7 2.8206 -5.2940 6.2474 12 6 2.4536 -6.1242 7.3973 13 6 3.6726 -6.3076 8.3037 14 1 4.5053 -6.7152 7.7305 15 6 4.0751 -4.9523 8.9226 16 6 4.4916 -5.3394 10.3693 17 6 3.4899 -6.4787 10.6832 18 7 3.3390 -7.2124 9.4134 19 6 2.9518 -8.5199 9.2883 20 1 3.0950 -9.0382 8.3517 21 6 2.3752 -9.1791 10.3653 22 7 2.2011 -8.5476 11.5069 23 14 1.8465 -10.9625 10.1944 24 1 3.0255 -11.7978 9.8520 25 1 1.2642 -11.4313 11.4776 26 1 0.8298 -11.0764 9.1180 27 7 3.4823 -3.6299 3.9212 28 7 3.4482 -2.9267 2.8430 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 2.0698 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1420 40 1 0.3247 -3.7908 3.1984 41 1 3.7438 -5.0259 6.1176 42 1 2.1110 -7.0981 7.0478 43 1 1.6549 -5.6373 7.9568 44 1 4.9159 -4.5165 8.3830 45 1 3.2272 -4.2674 8.9359 46 1 4.3577 -4.5019 11.0539 47 1 5.5185 -5.7037 10.3961 48 1 2.5320 -6.0654 10.9987 49 1 3.8918 -7.1351 11.4551 50 1 1.7979 -9.0080 12.2593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028128409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:50 Heat of formation + Delta-G solvation = 64.763391 kcal Electronic energy + Delta-G solvation = -28326.309329 eV Core-core repulsion = 24390.789792 eV Total energy + Delta-G solvation = -3935.519537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -42.33444 -39.16703 -37.76171 -37.47763 -34.62929 -34.11501 -32.42415 -31.23869 -30.06394 -29.44789 -28.45614 -27.76345 -25.19363 -24.87761 -24.20623 -22.74010 -22.05174 -20.69598 -20.36065 -20.00078 -19.49030 -18.10838 -16.77503 -16.38236 -16.26156 -15.84831 -15.79869 -15.05394 -14.93889 -14.65593 -14.46050 -14.27110 -14.17305 -13.78201 -13.69901 -13.27431 -13.00653 -12.85932 -12.59230 -12.39243 -12.07002 -12.03302 -11.82535 -11.68932 -11.58810 -11.52671 -11.27168 -11.25650 -11.14104 -10.90827 -10.74007 -10.53590 -10.19146 -10.09493 -9.99884 -9.80621 -9.73031 -9.63887 -9.40698 -8.60716 -8.51644 -6.79436 -5.72739 -3.09129 0.98826 1.70691 1.78770 3.39804 3.45144 3.47311 3.48111 3.49589 3.86085 4.08186 4.14935 4.27424 4.38553 4.51784 4.59669 4.67402 4.68863 4.89043 5.00550 5.04529 5.10521 5.23052 5.27681 5.34774 5.38883 5.41158 5.47649 5.55049 5.60473 5.67629 5.68897 5.75121 5.76492 5.88540 6.13091 6.14667 6.19834 6.33222 6.52447 6.60156 6.68426 6.76156 6.86711 7.12290 7.56223 7.65527 7.69109 7.83274 7.94817 8.29812 8.47070 9.21617 9.82172 10.50122 11.39228 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.001957 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.239119 B =14301.423663 C =15020.484748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.363 5.363 7 C 0.089 3.911 8 C -0.094 4.094 9 C 0.596 3.404 10 O -0.543 6.543 11 N -0.705 5.705 12 C 0.109 3.891 13 C 0.151 3.849 14 H 0.039 0.961 15 C -0.126 4.126 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.588 5.588 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.002 4.002 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.283 1.283 27 N -0.205 5.205 28 N -0.067 5.067 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.404 0.596 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.026 0.974 49 H 0.072 0.928 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 18.876 -22.761 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.167 4.167 5 C -0.001 4.001 6 N -0.148 5.148 7 C -0.068 4.068 8 C -0.234 4.234 9 C 0.379 3.621 10 O -0.419 6.419 11 N -0.355 5.355 12 C -0.016 4.016 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.164 4.164 16 C -0.187 4.187 17 C 0.048 3.952 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.093 0.907 21 C -0.199 4.199 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.210 1.210 27 N -0.078 5.078 28 N -0.047 5.047 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.220 0.780 41 H 0.238 0.762 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.090 0.910 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.413 18.894 -22.718 29.551 hybrid contribution -1.096 -1.056 -0.142 1.529 sum -1.509 17.837 -22.860 29.035 Atomic orbital electron populations 1.21970 0.94914 1.01931 1.02417 1.21069 0.96052 0.96741 0.97381 1.21824 1.01293 0.95318 1.02094 1.21979 1.03150 0.92246 0.99374 1.22180 1.00654 0.93260 0.83994 1.50533 1.08008 1.35721 1.20512 1.23388 1.00028 0.93509 0.89842 1.21661 0.89728 1.10044 1.01940 1.16797 0.85432 0.79162 0.80755 1.90816 1.18719 1.57222 1.75187 1.45950 1.11207 1.52305 1.26006 1.22309 1.00076 0.94143 0.85051 1.21136 0.93630 0.90627 0.90309 0.94333 1.22656 1.00075 0.96607 0.97094 1.23057 1.00399 0.99787 0.95497 1.21451 0.94431 0.90286 0.89076 1.44474 1.79471 1.07609 0.99703 1.18948 1.33266 0.85373 0.98573 0.90680 1.24916 0.99795 0.98691 0.96495 1.69926 1.48300 1.35818 1.02135 0.86226 0.78569 0.84310 0.76819 1.21106 1.21603 1.20968 1.74644 1.20296 1.06024 1.06864 1.81945 0.95574 1.19371 1.07836 0.92250 0.92501 0.92304 0.90624 0.92367 0.92338 0.92486 0.90847 0.89876 0.88431 0.87629 0.77986 0.76175 0.91239 0.91337 0.92236 0.91851 0.92355 0.92299 0.95617 0.90997 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.95 37.16 0.33 -0.15 16 2 C -0.09 -0.33 2.92 -90.62 -0.26 -0.59 16 3 C -0.15 -0.58 9.19 37.16 0.34 -0.23 16 4 C -0.13 -0.63 4.89 -26.73 -0.13 -0.77 16 5 C 0.12 0.59 6.29 -4.04 -0.03 0.57 16 6 N -0.36 -3.36 3.69 -61.06 -0.23 -3.58 16 7 C 0.09 0.93 11.27 -16.84 -0.19 0.74 16 8 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 9 C 0.60 10.03 7.82 -12.48 -0.10 9.93 16 10 O -0.54 -10.72 16.85 5.28 0.09 -10.63 16 11 N -0.70 -11.74 5.34 -61.35 -0.33 -12.07 16 12 C 0.11 2.17 5.09 -4.04 -0.02 2.15 16 13 C 0.15 3.09 3.20 -66.95 -0.21 2.88 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.13 -2.22 6.18 -24.74 -0.15 -2.37 16 16 C -0.15 -2.81 7.11 -24.42 -0.17 -2.98 16 17 C 0.17 4.17 5.41 -2.52 -0.01 4.16 16 18 N -0.59 -14.81 3.13 -162.56 -0.51 -15.32 16 19 C -0.23 -6.45 9.73 -15.06 -0.15 -6.59 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 22 N -0.92 -26.84 10.57 55.49 0.59 -26.26 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 N -0.20 -2.89 12.04 32.85 0.40 -2.49 16 28 N -0.07 -0.83 13.65 60.35 0.82 -0.01 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.14 6.57 -51.93 -0.34 -0.21 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.28 6.51 -51.93 -0.34 -0.05 16 40 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.40 6.00 8.07 -40.82 -0.33 5.67 16 42 H 0.07 1.54 7.88 -51.93 -0.41 1.13 16 43 H 0.07 1.49 8.04 -51.93 -0.42 1.08 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 49 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -33.37 406.54 -7.98 -41.35 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.48 Total: 0.94 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.44 Total: 4.69 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.74 Total: -59.73 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.37 -7.98 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028128409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.111 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds