Wall clock time and date at job start Tue Mar 31 2020 20:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47304 * 2 1 4 4 C 1.53001 * 109.46974 * 120.00134 * 2 1 3 5 5 C 1.53000 * 109.46810 * 65.00072 * 4 2 1 6 6 N 1.46502 * 109.46951 * 179.97438 * 5 4 2 7 7 C 1.34813 * 126.59741 * 125.24764 * 6 5 4 8 8 C 1.36593 * 106.83898 * 180.13069 * 7 6 5 9 9 C 1.47523 * 125.76922 * 179.89600 * 8 7 6 10 10 O 1.21596 * 119.99763 * 359.70921 * 9 8 7 11 11 N 1.34773 * 120.00227 * 179.71729 * 9 8 7 12 12 C 1.46497 * 120.00083 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47269 * 185.65581 * 12 11 9 14 14 H 1.09000 * 109.99510 * 304.84298 * 13 12 11 15 15 C 1.54326 * 109.88078 * 65.93746 * 13 12 11 16 16 C 1.55444 * 102.96840 * 141.61473 * 15 13 12 17 17 C 1.54917 * 101.44837 * 324.51541 * 16 15 13 18 18 N 1.47017 * 109.88305 * 183.74839 * 13 12 11 19 19 C 1.36936 * 125.64982 * 61.62433 * 18 13 12 20 20 H 1.07999 * 120.00294 * 14.68119 * 19 18 13 21 21 C 1.38820 * 119.99597 * 194.68661 * 19 18 13 22 22 N 1.31615 * 120.00396 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99451 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47379 * 60.00099 * 23 21 19 25 25 H 1.48504 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47376 * 299.99855 * 23 21 19 27 27 N 1.34399 * 108.46061 * 359.63501 * 8 7 6 28 28 N 1.28763 * 109.52347 * 0.22377 * 27 8 7 29 29 H 1.09003 * 109.47006 * 59.99704 * 1 2 3 30 30 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 300.00248 * 1 2 3 32 32 H 1.09004 * 109.46866 * 240.00217 * 2 1 3 33 33 H 1.08998 * 109.47546 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47148 * 300.00391 * 3 2 1 35 35 H 1.09004 * 109.46982 * 60.00288 * 3 2 1 36 36 H 1.08991 * 109.46823 * 305.00075 * 4 2 1 37 37 H 1.09000 * 109.46872 * 184.99687 * 4 2 1 38 38 H 1.09004 * 109.47347 * 60.00012 * 5 4 2 39 39 H 1.09000 * 109.47089 * 299.99482 * 5 4 2 40 40 H 1.07999 * 126.57989 * 359.97438 * 7 6 5 41 41 H 0.97008 * 119.99940 * 359.97438 * 11 9 8 42 42 H 1.09002 * 109.47158 * 65.65709 * 12 11 9 43 43 H 1.08996 * 109.47264 * 305.65474 * 12 11 9 44 44 H 1.08998 * 110.71800 * 259.97694 * 15 13 12 45 45 H 1.08997 * 110.72125 * 23.25220 * 15 13 12 46 46 H 1.08998 * 111.11882 * 206.46712 * 16 15 13 47 47 H 1.08996 * 111.01683 * 82.51954 * 16 15 13 48 48 H 1.08998 * 110.36802 * 278.11252 * 17 16 15 49 49 H 1.09007 * 110.36326 * 155.89781 * 17 16 15 50 50 H 0.96991 * 120.00137 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 7 2.1240 -2.8863 2.3837 7 6 1.3881 -3.6096 3.2513 8 6 2.2449 -4.0664 4.2120 9 6 1.8755 -4.9028 5.3698 10 8 0.7184 -5.2392 5.5322 11 7 2.8206 -5.2940 6.2474 12 6 2.4536 -6.1242 7.3973 13 6 3.6726 -6.3076 8.3037 14 1 4.5053 -6.7152 7.7305 15 6 4.0751 -4.9523 8.9226 16 6 4.4916 -5.3394 10.3693 17 6 3.4899 -6.4787 10.6832 18 7 3.3390 -7.2124 9.4134 19 6 2.9518 -8.5199 9.2883 20 1 3.0950 -9.0382 8.3517 21 6 2.3752 -9.1791 10.3653 22 7 2.2011 -8.5476 11.5069 23 14 1.8465 -10.9625 10.1944 24 1 3.0255 -11.7978 9.8520 25 1 1.2642 -11.4313 11.4776 26 1 0.8298 -11.0764 9.1180 27 7 3.4823 -3.6299 3.9212 28 7 3.4482 -2.9267 2.8430 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 2.0698 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1420 40 1 0.3247 -3.7908 3.1984 41 1 3.7438 -5.0259 6.1176 42 1 2.1110 -7.0981 7.0478 43 1 1.6549 -5.6373 7.9568 44 1 4.9159 -4.5165 8.3830 45 1 3.2272 -4.2674 8.9359 46 1 4.3577 -4.5019 11.0539 47 1 5.5185 -5.7037 10.3961 48 1 2.5320 -6.0654 10.9987 49 1 3.8918 -7.1351 11.4551 50 1 1.7979 -9.0080 12.2593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028128409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:48 Heat of formation + Delta-G solvation = 42.635177 kcal Electronic energy + Delta-G solvation = -28327.268881 eV Core-core repulsion = 24390.789792 eV Total energy + Delta-G solvation = -3936.479088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.24419 -40.57909 -39.19571 -38.13522 -35.81973 -35.17277 -34.37206 -32.22591 -31.41835 -30.75097 -29.88416 -28.01842 -26.78479 -25.98918 -25.54158 -24.01136 -22.82262 -22.02402 -21.42772 -21.14662 -20.88326 -19.29360 -18.51648 -17.39624 -17.25367 -17.17554 -16.66455 -16.34349 -16.12011 -15.92318 -15.70468 -15.62104 -15.00624 -14.86762 -14.53904 -14.47668 -14.10291 -13.94186 -13.63839 -13.39492 -13.31020 -13.18632 -12.97819 -12.94863 -12.85171 -12.63661 -12.55997 -12.27879 -12.04491 -11.92342 -11.86242 -11.72309 -11.58208 -11.51006 -11.48127 -11.40414 -11.26509 -11.24005 -10.65668 -10.42675 -10.01625 -8.84552 -7.86418 -5.24220 0.14264 0.61227 1.08383 1.45888 1.49240 1.54976 2.11118 2.23439 2.51443 3.16674 3.31155 3.33328 3.70785 3.75894 3.81770 3.93188 3.98132 3.99733 4.00115 4.03470 4.23869 4.26880 4.32777 4.45714 4.47923 4.54564 4.66728 4.73938 4.74190 4.82067 4.88008 4.97266 4.98138 5.00392 5.05566 5.10664 5.15175 5.21149 5.30849 5.33804 5.42670 5.46449 5.48303 5.50131 5.56902 5.67502 5.79297 6.24372 6.44962 6.90785 7.10497 7.15301 7.77383 8.44073 9.24387 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.001957 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.239119 B =14301.423663 C =15020.484748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.346 5.346 7 C 0.110 3.890 8 C -0.121 4.121 9 C 0.598 3.402 10 O -0.577 6.577 11 N -0.697 5.697 12 C 0.130 3.870 13 C 0.148 3.852 14 H 0.049 0.951 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.175 3.825 18 N -0.609 5.609 19 C -0.241 4.241 20 H 0.077 0.923 21 C -0.060 4.060 22 N -0.945 5.945 23 Si 0.973 3.027 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.281 1.281 27 N -0.222 5.222 28 N -0.081 5.081 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.234 0.766 41 H 0.415 0.585 42 H 0.040 0.960 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.070 0.930 48 H -0.006 1.006 49 H 0.037 0.963 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 20.140 -25.470 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.008 4.008 6 N -0.131 5.131 7 C -0.049 4.049 8 C -0.261 4.261 9 C 0.384 3.616 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.004 3.996 13 C 0.040 3.960 14 H 0.067 0.933 15 C -0.152 4.152 16 C -0.172 4.172 17 C 0.050 3.950 18 N -0.334 5.334 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.802 3.198 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.207 1.207 27 N -0.096 5.096 28 N -0.062 5.062 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.250 0.750 41 H 0.252 0.748 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.012 0.988 49 H 0.055 0.945 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.154 20.206 -25.492 32.529 hybrid contribution -1.176 -1.345 0.551 1.870 sum -1.330 18.861 -24.941 31.298 Atomic orbital electron populations 1.21982 0.94332 1.02700 1.02275 1.21031 0.96428 0.96225 0.96942 1.21846 1.01044 0.95785 1.02101 1.21910 1.02161 0.92383 0.99742 1.22674 1.02611 0.92777 0.82786 1.50813 1.06823 1.34618 1.20835 1.23803 1.00897 0.91734 0.88426 1.21315 0.90850 1.11676 1.02255 1.17120 0.84722 0.78702 0.81104 1.90792 1.20055 1.58630 1.76158 1.45708 1.11948 1.51916 1.25180 1.21766 0.99078 0.92961 0.85782 1.21310 0.93629 0.91588 0.89436 0.93334 1.22633 1.01504 0.94837 0.96180 1.22930 0.99141 0.98304 0.96803 1.21263 0.94271 0.91280 0.88227 1.44724 1.79371 1.07744 1.01526 1.19273 1.32460 0.86883 0.98405 0.90539 1.25702 1.00607 1.02649 0.96404 1.70131 1.49452 1.37098 1.02605 0.85236 0.78263 0.79929 0.76417 1.20077 1.21920 1.20686 1.74612 1.20640 1.06656 1.07698 1.81872 0.97365 1.19386 1.07578 0.91993 0.91266 0.92926 0.89604 0.92821 0.91748 0.93095 0.91800 0.91365 0.86631 0.84542 0.74952 0.74839 0.94114 0.93705 0.88345 0.91680 0.89856 0.91171 0.98832 0.94452 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 8.95 71.98 0.64 0.09 16 2 C -0.09 -0.41 2.92 -10.79 -0.03 -0.44 16 3 C -0.15 -0.96 9.19 71.98 0.66 -0.30 16 4 C -0.12 -0.95 4.89 30.59 0.15 -0.80 16 5 C 0.11 0.72 6.29 86.38 0.54 1.26 16 6 N -0.35 -5.47 3.69 -347.09 -1.28 -6.76 16 7 C 0.11 2.01 11.27 83.85 0.95 2.95 16 8 C -0.12 -3.20 6.99 40.82 0.29 -2.92 16 9 C 0.60 19.88 7.82 86.69 0.68 20.56 16 10 O -0.58 -22.83 16.85 -4.02 -0.07 -22.90 16 11 N -0.70 -22.90 5.34 -466.28 -2.49 -25.39 16 12 C 0.13 5.27 5.09 86.38 0.44 5.71 16 13 C 0.15 5.96 3.20 45.34 0.15 6.11 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.11 -3.75 6.18 31.89 0.20 -3.55 16 16 C -0.13 -4.83 7.11 32.09 0.23 -4.60 16 17 C 0.17 8.67 5.41 86.86 0.47 9.14 16 18 N -0.61 -31.29 3.13 -668.22 -2.09 -33.38 16 19 C -0.24 -13.64 9.73 84.04 0.82 -12.83 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.06 -3.46 5.47 84.86 0.46 -3.00 16 22 N -0.95 -57.54 10.57 21.65 0.23 -57.31 16 23 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 27 N -0.22 -5.97 12.04 -50.00 -0.60 -6.57 16 28 N -0.08 -1.89 13.65 37.02 0.51 -1.38 16 29 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.08 6.57 -2.39 -0.02 0.06 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 33 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.14 0.12 6.51 -2.39 -0.02 0.10 16 40 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.41 11.78 8.07 -92.70 -0.75 11.04 16 42 H 0.04 1.87 7.88 -2.39 -0.02 1.85 16 43 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 44 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.06 2.15 7.79 -2.39 -0.02 2.13 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H -0.01 -0.35 8.06 -2.39 -0.02 -0.37 16 49 H 0.04 2.08 6.93 -2.38 -0.02 2.06 16 50 H 0.25 14.72 8.31 -92.72 -0.77 13.95 16 Total: -1.00 -75.89 406.54 3.05 -72.84 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.18 Total: 14.64 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.64 Total: 17.39 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -5.73 Total: -130.80 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.07 Total: -22.90 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.89 3.05 -72.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028128409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.473 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds