Wall clock time and date at job start Tue Mar 31 2020 20:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46803 * 2 1 4 4 C 1.36589 * 126.58324 * 270.02203 * 3 2 1 5 5 C 1.47520 * 125.77203 * 359.97438 * 4 3 2 6 6 O 1.21604 * 120.00036 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00373 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00326 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.24504 * 324.65895 * 8 7 5 10 10 C 1.54842 * 109.36171 * 205.00148 * 8 7 5 11 11 C 1.50124 * 110.81724 * 200.92752 * 10 8 7 12 12 C 1.52529 * 105.41472 * 97.68105 * 11 10 8 13 13 C 1.46243 * 114.27473 * 270.59034 * 12 11 10 14 14 N 1.50170 * 107.53210 * 58.41347 * 13 12 11 15 15 C 1.36933 * 120.53876 * 109.56279 * 14 13 12 16 16 H 1.08001 * 119.99952 * 156.67778 * 15 14 13 17 17 C 1.38807 * 120.00199 * 336.68084 * 15 14 13 18 18 N 1.31627 * 120.00085 * 340.30112 * 17 15 14 19 19 Si 1.86797 * 120.00165 * 160.30073 * 17 15 14 20 20 H 1.48498 * 109.47188 * 266.02049 * 19 17 15 21 21 H 1.48503 * 109.47057 * 146.01989 * 19 17 15 22 22 H 1.48494 * 109.47116 * 26.02357 * 19 17 15 23 23 C 1.43436 * 118.92429 * 289.83665 * 14 13 12 24 24 N 1.34398 * 108.45868 * 180.24671 * 4 3 2 25 25 N 1.28760 * 109.52572 * 359.58802 * 24 4 3 26 26 N 1.34816 * 126.57588 * 90.02780 * 3 2 1 27 27 C 1.46500 * 126.59481 * 0.02562 * 26 3 2 28 28 C 1.53001 * 109.47328 * 89.99942 * 27 26 3 29 29 H 1.08994 * 109.46961 * 299.99663 * 1 2 3 30 30 H 1.09006 * 109.46882 * 59.99953 * 1 2 3 31 31 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47177 * 240.00715 * 2 1 3 33 33 H 1.08998 * 109.47455 * 120.00324 * 2 1 3 34 34 H 0.96996 * 119.99753 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.20816 * 80.57549 * 10 8 7 36 36 H 1.09003 * 109.20239 * 321.26631 * 10 8 7 37 37 H 1.08998 * 110.25016 * 338.70622 * 11 10 8 38 38 H 1.09000 * 110.24719 * 216.65500 * 11 10 8 39 39 H 1.08995 * 108.52238 * 149.35457 * 12 11 10 40 40 H 1.08997 * 108.40305 * 31.74386 * 12 11 10 41 41 H 1.08990 * 109.84758 * 298.90085 * 13 12 11 42 42 H 1.08997 * 109.89745 * 177.94930 * 13 12 11 43 43 H 0.96996 * 120.00447 * 179.97438 * 18 17 15 44 44 H 1.08991 * 108.16323 * 213.03339 * 23 14 13 45 45 H 1.09001 * 108.15805 * 329.60206 * 23 14 13 46 46 H 1.09001 * 109.47041 * 209.99932 * 27 26 3 47 47 H 1.08999 * 109.47078 * 329.99556 * 27 26 3 48 48 H 1.09002 * 109.46866 * 59.99888 * 28 27 26 49 49 H 1.09000 * 109.46896 * 179.97438 * 28 27 26 50 50 H 1.09000 * 109.46748 * 299.99528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3032 2.1885 -1.0968 5 6 2.1542 1.7669 -2.5026 6 8 1.7582 0.6470 -2.7628 7 7 2.4559 2.6233 -3.4986 8 6 2.3073 2.2048 -4.8947 9 1 2.5661 1.1497 -4.9830 10 6 3.2572 3.0425 -5.7856 11 6 2.7999 3.0267 -7.2154 12 6 2.0155 4.3210 -7.4045 13 6 0.5892 4.2095 -7.1010 14 7 0.4643 3.7556 -5.6750 15 6 0.0016 4.6106 -4.7106 16 1 -0.4390 4.2172 -3.8065 17 6 0.0988 5.9829 -4.8952 18 7 0.9528 6.4705 -5.7701 19 14 -0.9822 7.1378 -3.9018 20 1 -2.2089 7.4561 -4.6759 21 1 -0.2375 8.3907 -3.6171 22 1 -1.3596 6.4849 -2.6226 23 6 0.8432 2.4137 -5.3384 24 7 2.7342 3.3909 -0.6787 25 7 2.7402 3.4222 0.6085 26 7 2.3005 2.1781 1.0827 27 6 2.1603 1.7778 2.4849 28 6 3.4717 1.1582 2.9720 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7706 3.5170 -3.2911 35 1 4.2634 2.6276 -5.7261 36 1 3.2724 4.0711 -5.4253 37 1 2.1564 2.1657 -7.3962 38 1 3.6590 3.0047 -7.8860 39 1 2.1249 4.6441 -8.4397 40 1 2.4486 5.0836 -6.7573 41 1 0.1259 3.4789 -7.7639 42 1 0.1068 5.1791 -7.2243 43 1 1.0205 7.4294 -5.8994 44 1 0.1965 2.0706 -4.5309 45 1 0.6587 1.7808 -6.2064 46 1 1.9248 2.6528 3.0907 47 1 1.3571 1.0465 2.5754 48 1 4.2748 1.8896 2.8815 49 1 3.3674 0.8608 4.0155 50 1 3.7070 0.2831 2.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034393855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:01 Heat of formation + Delta-G solvation = 75.699292 kcal Electronic energy + Delta-G solvation = -30869.147968 eV Core-core repulsion = 26934.102648 eV Total energy + Delta-G solvation = -3935.045321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.15987 -39.12825 -37.51359 -35.84562 -34.26444 -33.73404 -33.00577 -31.02617 -30.65787 -30.17932 -29.18749 -26.10007 -25.07260 -24.24623 -23.72562 -23.12669 -22.50793 -20.57144 -20.16588 -19.51042 -18.99638 -17.62161 -16.55904 -16.17835 -16.02462 -15.47924 -14.96037 -14.86561 -14.66556 -14.52821 -14.06043 -14.01018 -13.73402 -13.53394 -13.23296 -12.98582 -12.76583 -12.58264 -12.33723 -12.27733 -12.14395 -11.93796 -11.70169 -11.49025 -11.46689 -11.30104 -11.21227 -10.82266 -10.71661 -10.68433 -10.39669 -10.16783 -10.02861 -9.88620 -9.65986 -9.48028 -9.33110 -9.17566 -9.00136 -8.50813 -8.20713 -6.61580 -5.72659 -3.10544 1.23158 2.01027 2.05247 3.43339 3.51226 3.52873 3.68542 3.80986 4.20664 4.21348 4.49064 4.57759 4.61516 4.74842 4.86610 5.03101 5.11647 5.13952 5.31784 5.38383 5.41947 5.46796 5.55504 5.57242 5.63272 5.72599 5.73042 5.92724 6.01170 6.10646 6.16774 6.19732 6.30654 6.33882 6.47075 6.51997 6.60263 6.69308 6.94423 6.98700 7.04351 7.11027 7.30916 7.33594 7.67954 7.82907 8.02572 8.06494 8.29148 8.49956 8.77910 9.26820 9.93875 10.46578 11.34243 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003992 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.533188 B = 7012.142878 C = 8105.441861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C 0.119 3.881 4 C -0.093 4.093 5 C 0.599 3.401 6 O -0.554 6.554 7 N -0.683 5.683 8 C 0.118 3.882 9 H 0.073 0.927 10 C -0.111 4.111 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.165 3.835 14 N -0.582 5.582 15 C -0.238 4.238 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.895 3.105 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.282 1.282 23 C 0.152 3.848 24 N -0.196 5.196 25 N -0.074 5.074 26 N -0.365 5.365 27 C 0.117 3.883 28 C -0.170 4.170 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.101 0.899 41 H 0.005 0.995 42 H 0.089 0.911 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -12.766 12.266 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.019 4.019 4 C -0.232 4.232 5 C 0.383 3.617 6 O -0.433 6.433 7 N -0.330 5.330 8 C 0.010 3.990 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.149 4.149 12 C -0.169 4.169 13 C 0.042 3.958 14 N -0.303 5.303 15 C -0.368 4.368 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.545 5.545 19 Si 0.726 3.274 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C 0.021 3.979 24 N -0.069 5.069 25 N -0.052 5.052 26 N -0.151 5.151 27 C -0.004 4.004 28 C -0.229 4.229 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.119 0.881 41 H 0.023 0.977 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.452 -11.931 12.446 17.807 hybrid contribution -0.573 0.393 0.700 0.986 sum 3.879 -11.538 13.146 17.917 Atomic orbital electron populations 1.21669 0.93192 1.02610 1.02554 1.20442 0.97261 0.87401 1.04992 1.21894 0.97320 0.96217 0.86425 1.21402 1.14037 0.91938 0.95864 1.16657 0.77920 0.84736 0.82379 1.90698 1.48665 1.20343 1.83617 1.45833 1.64668 1.16687 1.05841 1.22777 0.99887 0.97385 0.78947 0.90883 1.21680 0.96211 1.01553 0.95476 1.20971 0.99107 0.99688 0.95168 1.21017 0.99170 0.96993 0.99769 1.20167 0.94111 0.98788 0.82783 1.44265 1.72890 1.09122 1.04021 1.19138 1.31049 0.86930 0.99656 0.91882 1.24822 0.98333 0.97036 0.99118 1.69964 1.34645 1.11613 1.38237 0.86378 0.80528 0.80769 0.79764 1.21775 1.21934 1.20774 1.20698 0.91566 0.88081 0.97534 1.74668 1.10546 1.17843 1.03818 1.81976 1.20537 0.99028 1.03701 1.50452 1.46116 1.11286 1.07239 1.21927 0.99915 1.01967 0.76629 1.22188 0.96706 1.01772 1.02189 0.93365 0.91141 0.91285 0.86488 0.90800 0.75583 0.94261 0.90064 0.92429 0.93290 0.95732 0.88087 0.97722 0.89334 0.93869 0.94462 0.94518 0.87689 0.88233 0.91230 0.89905 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.06 -0.67 5.43 -27.88 -0.15 -0.82 16 3 C 0.12 1.67 6.27 -81.88 -0.51 1.16 16 4 C -0.09 -1.63 6.99 -83.56 -0.58 -2.22 16 5 C 0.60 11.40 7.63 -12.48 -0.10 11.31 16 6 O -0.55 -10.83 14.38 5.27 0.08 -10.75 16 7 N -0.68 -13.36 5.08 -53.19 -0.27 -13.63 16 8 C 0.12 2.26 2.91 -66.22 -0.19 2.07 16 9 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 10 C -0.11 -2.06 5.23 -27.19 -0.14 -2.21 16 11 C -0.11 -2.01 5.76 -28.40 -0.16 -2.17 16 12 C -0.13 -2.75 5.02 -30.18 -0.15 -2.90 16 13 C 0.16 3.80 5.25 -5.20 -0.03 3.77 16 14 N -0.58 -14.04 2.61 -175.41 -0.46 -14.50 16 15 C -0.24 -6.37 9.62 -15.06 -0.14 -6.51 16 16 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -24.48 9.43 55.49 0.52 -23.95 16 19 Si 0.89 22.07 29.60 -169.99 -5.03 17.04 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.15 3.26 4.75 -4.92 -0.02 3.23 16 24 N -0.20 -3.66 12.04 32.84 0.40 -3.27 16 25 N -0.07 -1.22 13.78 60.35 0.83 -0.39 16 26 N -0.36 -4.67 3.63 -56.85 -0.21 -4.88 16 27 C 0.12 0.88 6.87 -4.04 -0.03 0.85 16 28 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.12 1.46 6.43 -51.93 -0.33 1.13 16 33 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 34 H 0.41 8.37 8.13 -40.82 -0.33 8.04 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.75 6.58 -51.93 -0.34 1.40 16 37 H 0.06 1.02 6.28 -51.93 -0.33 0.69 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 2.44 5.28 -51.93 -0.27 2.17 16 41 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16 42 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 43 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.04 0.87 7.80 -51.93 -0.41 0.46 16 45 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.53 7.76 -51.93 -0.40 0.12 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -30.50 391.00 -7.89 -38.39 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.09 Total: 6.20 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.56 Total: 3.84 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.82 Total: -60.61 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.50 -7.89 -38.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034393855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.088 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds