Wall clock time and date at job start Tue Mar 31 2020 20:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46803 * 2 1 4 4 C 1.36589 * 126.58324 * 270.02203 * 3 2 1 5 5 C 1.47520 * 125.77203 * 359.97438 * 4 3 2 6 6 O 1.21604 * 120.00036 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00373 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00326 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.24504 * 324.65895 * 8 7 5 10 10 C 1.54842 * 109.36171 * 205.00148 * 8 7 5 11 11 C 1.50124 * 110.81724 * 200.92752 * 10 8 7 12 12 C 1.52529 * 105.41472 * 97.68105 * 11 10 8 13 13 C 1.46243 * 114.27473 * 270.59034 * 12 11 10 14 14 N 1.50170 * 107.53210 * 58.41347 * 13 12 11 15 15 C 1.36933 * 120.53876 * 109.56279 * 14 13 12 16 16 H 1.08001 * 119.99952 * 156.67778 * 15 14 13 17 17 C 1.38807 * 120.00199 * 336.68084 * 15 14 13 18 18 N 1.31627 * 120.00085 * 340.30112 * 17 15 14 19 19 Si 1.86797 * 120.00165 * 160.30073 * 17 15 14 20 20 H 1.48498 * 109.47188 * 266.02049 * 19 17 15 21 21 H 1.48503 * 109.47057 * 146.01989 * 19 17 15 22 22 H 1.48494 * 109.47116 * 26.02357 * 19 17 15 23 23 C 1.43436 * 118.92429 * 289.83665 * 14 13 12 24 24 N 1.34398 * 108.45868 * 180.24671 * 4 3 2 25 25 N 1.28760 * 109.52572 * 359.58802 * 24 4 3 26 26 N 1.34816 * 126.57588 * 90.02780 * 3 2 1 27 27 C 1.46500 * 126.59481 * 0.02562 * 26 3 2 28 28 C 1.53001 * 109.47328 * 89.99942 * 27 26 3 29 29 H 1.08994 * 109.46961 * 299.99663 * 1 2 3 30 30 H 1.09006 * 109.46882 * 59.99953 * 1 2 3 31 31 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47177 * 240.00715 * 2 1 3 33 33 H 1.08998 * 109.47455 * 120.00324 * 2 1 3 34 34 H 0.96996 * 119.99753 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.20816 * 80.57549 * 10 8 7 36 36 H 1.09003 * 109.20239 * 321.26631 * 10 8 7 37 37 H 1.08998 * 110.25016 * 338.70622 * 11 10 8 38 38 H 1.09000 * 110.24719 * 216.65500 * 11 10 8 39 39 H 1.08995 * 108.52238 * 149.35457 * 12 11 10 40 40 H 1.08997 * 108.40305 * 31.74386 * 12 11 10 41 41 H 1.08990 * 109.84758 * 298.90085 * 13 12 11 42 42 H 1.08997 * 109.89745 * 177.94930 * 13 12 11 43 43 H 0.96996 * 120.00447 * 179.97438 * 18 17 15 44 44 H 1.08991 * 108.16323 * 213.03339 * 23 14 13 45 45 H 1.09001 * 108.15805 * 329.60206 * 23 14 13 46 46 H 1.09001 * 109.47041 * 209.99932 * 27 26 3 47 47 H 1.08999 * 109.47078 * 329.99556 * 27 26 3 48 48 H 1.09002 * 109.46866 * 59.99888 * 28 27 26 49 49 H 1.09000 * 109.46896 * 179.97438 * 28 27 26 50 50 H 1.09000 * 109.46748 * 299.99528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3032 2.1885 -1.0968 5 6 2.1542 1.7669 -2.5026 6 8 1.7582 0.6470 -2.7628 7 7 2.4559 2.6233 -3.4986 8 6 2.3073 2.2048 -4.8947 9 1 2.5661 1.1497 -4.9830 10 6 3.2572 3.0425 -5.7856 11 6 2.7999 3.0267 -7.2154 12 6 2.0155 4.3210 -7.4045 13 6 0.5892 4.2095 -7.1010 14 7 0.4643 3.7556 -5.6750 15 6 0.0016 4.6106 -4.7106 16 1 -0.4390 4.2172 -3.8065 17 6 0.0988 5.9829 -4.8952 18 7 0.9528 6.4705 -5.7701 19 14 -0.9822 7.1378 -3.9018 20 1 -2.2089 7.4561 -4.6759 21 1 -0.2375 8.3907 -3.6171 22 1 -1.3596 6.4849 -2.6226 23 6 0.8432 2.4137 -5.3384 24 7 2.7342 3.3909 -0.6787 25 7 2.7402 3.4222 0.6085 26 7 2.3005 2.1781 1.0827 27 6 2.1603 1.7778 2.4849 28 6 3.4717 1.1582 2.9720 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7706 3.5170 -3.2911 35 1 4.2634 2.6276 -5.7261 36 1 3.2724 4.0711 -5.4253 37 1 2.1564 2.1657 -7.3962 38 1 3.6590 3.0047 -7.8860 39 1 2.1249 4.6441 -8.4397 40 1 2.4486 5.0836 -6.7573 41 1 0.1259 3.4789 -7.7639 42 1 0.1068 5.1791 -7.2243 43 1 1.0205 7.4294 -5.8994 44 1 0.1965 2.0706 -4.5309 45 1 0.6587 1.7808 -6.2064 46 1 1.9248 2.6528 3.0907 47 1 1.3571 1.0465 2.5754 48 1 4.2748 1.8896 2.8815 49 1 3.3674 0.8608 4.0155 50 1 3.7070 0.2831 2.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034393855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:59 Heat of formation + Delta-G solvation = 56.262464 kcal Electronic energy + Delta-G solvation = -30869.990813 eV Core-core repulsion = 26934.102648 eV Total energy + Delta-G solvation = -3935.888165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.33324 -40.66805 -39.15535 -36.80751 -35.82643 -34.84289 -34.63342 -32.87450 -31.93796 -31.32039 -30.51279 -27.95198 -26.23061 -25.50849 -24.95629 -24.61244 -23.89033 -21.90070 -21.39203 -21.00444 -20.64769 -18.86820 -18.53386 -17.30775 -17.15068 -17.02720 -16.72586 -16.20576 -15.86509 -15.73703 -15.53129 -15.36520 -14.97594 -14.86902 -14.78706 -14.03094 -13.90840 -13.80229 -13.73183 -13.39917 -13.35520 -13.23424 -13.18517 -13.13983 -12.69431 -12.66939 -12.39432 -12.33196 -12.27499 -12.19953 -11.90719 -11.80803 -11.77155 -11.26972 -11.18616 -11.11650 -10.92385 -10.88903 -10.44779 -10.25496 -9.85946 -8.56605 -7.79902 -5.18259 0.12153 0.65828 1.11055 1.42250 1.45808 1.51548 2.25516 2.40114 2.53926 3.18061 3.32680 3.42361 3.54639 3.64562 3.73913 3.94699 3.99415 4.15342 4.20339 4.26385 4.27955 4.41131 4.46234 4.52908 4.57713 4.60340 4.68616 4.73363 4.76342 4.88409 4.92018 4.93510 4.94992 5.08655 5.15835 5.17109 5.25604 5.30828 5.35226 5.37591 5.49531 5.54958 5.62757 5.70685 5.76530 5.84409 6.26975 6.44552 6.59703 6.94316 7.22673 7.27166 7.95122 8.43990 9.23506 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003992 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.533188 B = 7012.142878 C = 8105.441861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.058 4.058 3 C 0.134 3.866 4 C -0.128 4.128 5 C 0.598 3.402 6 O -0.563 6.563 7 N -0.690 5.690 8 C 0.124 3.876 9 H 0.086 0.914 10 C -0.102 4.102 11 C -0.102 4.102 12 C -0.123 4.123 13 C 0.167 3.833 14 N -0.592 5.592 15 C -0.240 4.240 16 H 0.043 0.957 17 C -0.031 4.031 18 N -0.908 5.908 19 Si 0.942 3.058 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.288 1.288 23 C 0.154 3.846 24 N -0.231 5.231 25 N -0.096 5.096 26 N -0.348 5.348 27 C 0.101 3.899 28 C -0.165 4.165 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.012 0.988 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.133 0.867 48 H 0.049 0.951 49 H 0.115 0.885 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -15.122 13.680 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.006 4.006 4 C -0.268 4.268 5 C 0.383 3.617 6 O -0.443 6.443 7 N -0.337 5.337 8 C 0.017 3.983 9 H 0.104 0.896 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.162 4.162 13 C 0.044 3.956 14 N -0.314 5.314 15 C -0.371 4.371 16 H 0.061 0.939 17 C -0.228 4.228 18 N -0.554 5.554 19 Si 0.773 3.227 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.214 1.214 23 C 0.025 3.975 24 N -0.104 5.104 25 N -0.075 5.075 26 N -0.134 5.134 27 C -0.018 4.018 28 C -0.223 4.223 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.133 0.867 47 H 0.151 0.849 48 H 0.068 0.932 49 H 0.134 0.866 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.741 -14.300 13.886 20.489 hybrid contribution -0.709 1.035 0.379 1.310 sum 4.032 -13.265 14.265 19.893 Atomic orbital electron populations 1.21655 0.92726 1.03895 1.01398 1.20583 0.97408 0.85285 1.06420 1.22335 0.95432 0.97131 0.85669 1.21437 1.16491 0.92812 0.96064 1.16895 0.77250 0.84507 0.83047 1.90671 1.49041 1.20560 1.84050 1.45887 1.65116 1.16483 1.06200 1.22643 0.98307 0.98176 0.79142 0.89621 1.21574 0.97348 0.99479 0.95591 1.20934 0.99784 0.98093 0.95139 1.20836 0.97862 0.97914 0.99603 1.20120 0.95426 0.97601 0.82434 1.44320 1.73442 1.09553 1.04054 1.19043 1.30936 0.87524 0.99561 0.93924 1.25260 0.99339 0.97878 1.00283 1.70093 1.35128 1.11222 1.38951 0.85654 0.79370 0.79191 0.78526 1.21460 1.22245 1.21412 1.20699 0.92613 0.86832 0.97367 1.74627 1.11895 1.18929 1.04908 1.81842 1.21495 1.01123 1.03057 1.50831 1.43891 1.09759 1.08894 1.22565 1.02024 1.03497 0.73706 1.22184 0.94970 1.00988 1.04109 0.91704 0.95089 0.88783 0.88072 0.86295 0.76416 0.91816 0.93344 0.91450 0.90444 0.94471 0.91376 0.95885 0.92501 0.94397 0.96920 0.92836 0.86651 0.84892 0.93166 0.86646 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.06 -1.12 5.43 29.85 0.16 -0.95 16 3 C 0.13 3.63 6.27 41.72 0.26 3.89 16 4 C -0.13 -4.60 6.99 40.81 0.29 -4.32 16 5 C 0.60 23.37 7.63 86.69 0.66 24.03 16 6 O -0.56 -22.26 14.38 -4.04 -0.06 -22.32 16 7 N -0.69 -27.85 5.08 -440.45 -2.24 -30.09 16 8 C 0.12 4.78 2.91 46.10 0.13 4.91 16 9 H 0.09 3.10 7.57 -2.39 -0.02 3.08 16 10 C -0.10 -3.70 5.23 30.30 0.16 -3.54 16 11 C -0.10 -3.45 5.76 29.51 0.17 -3.28 16 12 C -0.12 -5.12 5.02 28.36 0.14 -4.98 16 13 C 0.17 7.73 5.25 83.58 0.44 8.17 16 14 N -0.59 -29.09 2.61 -708.86 -1.85 -30.94 16 15 C -0.24 -13.27 9.62 84.03 0.81 -12.46 16 16 H 0.04 2.50 7.89 -2.91 -0.02 2.48 16 17 C -0.03 -1.72 4.91 84.86 0.42 -1.30 16 18 N -0.91 -50.82 9.43 21.65 0.20 -50.62 16 19 Si 0.94 46.60 29.60 68.60 2.03 48.63 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 23 C 0.15 6.67 4.75 87.42 0.41 7.08 16 24 N -0.23 -8.97 12.04 -50.00 -0.60 -9.57 16 25 N -0.10 -3.23 13.78 37.02 0.51 -2.72 16 26 N -0.35 -8.42 3.63 -333.78 -1.21 -9.64 16 27 C 0.10 1.20 6.87 86.38 0.59 1.79 16 28 C -0.16 -1.46 10.24 71.98 0.74 -0.72 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 2.37 6.43 -2.38 -0.02 2.36 16 33 H 0.12 1.25 7.82 -2.39 -0.02 1.23 16 34 H 0.40 17.34 8.13 -92.71 -0.75 16.59 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 2.11 6.58 -2.39 -0.02 2.10 16 37 H 0.07 2.18 6.28 -2.39 -0.02 2.17 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 3.34 5.28 -2.39 -0.01 3.33 16 41 H 0.02 0.97 8.13 -2.39 -0.02 0.95 16 42 H 0.06 2.99 6.06 -2.39 -0.01 2.98 16 43 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 44 H 0.01 0.60 7.80 -2.39 -0.02 0.58 16 45 H 0.05 2.11 6.89 -2.39 -0.02 2.09 16 46 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.13 0.76 7.76 -2.39 -0.02 0.74 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.00 391.00 3.08 -66.93 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.20 Total: 23.92 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.10 Total: 16.41 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.19 Total: -133.57 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -70.00 3.08 -66.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034393855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.190 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds