Wall clock time and date at job start Tue Mar 31 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36598 * 126.57761 * 2 1 4 4 C 1.47516 * 125.77177 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00130 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99909 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.08998 * 108.45958 * 327.28523 * 7 6 4 9 9 C 1.52527 * 108.51994 * 209.71955 * 7 6 4 10 10 C 1.50124 * 105.41550 * 149.34943 * 9 7 6 11 11 C 1.54847 * 110.81560 * 97.67853 * 10 9 7 12 12 C 1.54401 * 110.07111 * 321.07947 * 11 10 9 13 13 N 1.43430 * 116.38872 * 318.64643 * 12 11 10 14 14 C 1.36933 * 120.54018 * 271.73308 * 13 12 11 15 15 H 1.08001 * 119.99943 * 35.77448 * 14 13 12 16 16 C 1.38812 * 120.00346 * 215.77974 * 14 13 12 17 17 N 1.31620 * 120.00182 * 198.35185 * 16 14 13 18 18 Si 1.86805 * 119.99890 * 18.34941 * 16 14 13 19 19 H 1.48500 * 109.46917 * 264.79312 * 18 16 14 20 20 H 1.48493 * 109.47245 * 144.79322 * 18 16 14 21 21 H 1.48497 * 109.47248 * 24.79160 * 18 16 14 22 22 C 1.46231 * 108.52434 * 84.99925 * 7 6 4 23 23 N 1.34403 * 108.45630 * 180.24476 * 3 2 1 24 24 N 1.28764 * 109.52161 * 359.58844 * 23 3 2 25 25 N 1.34816 * 126.57952 * 180.02562 * 2 1 3 26 26 C 1.46496 * 126.59421 * 359.97438 * 25 2 1 27 27 C 1.52998 * 109.46970 * 120.00383 * 26 25 2 28 28 C 1.53001 * 109.47401 * 240.00013 * 26 25 2 29 29 H 1.08993 * 109.47089 * 89.97206 * 1 2 3 30 30 H 1.09000 * 109.46673 * 209.97514 * 1 2 3 31 31 H 1.09000 * 109.46968 * 329.97191 * 1 2 3 32 32 H 0.96998 * 120.00485 * 0.02562 * 6 4 3 33 33 H 1.09007 * 110.24688 * 268.32288 * 9 7 6 34 34 H 1.08999 * 110.25096 * 30.37985 * 9 7 6 35 35 H 1.08996 * 109.21372 * 218.02735 * 10 9 7 36 36 H 1.08999 * 109.20918 * 337.38788 * 10 9 7 37 37 H 1.09002 * 109.35413 * 81.34398 * 11 10 9 38 38 H 1.09002 * 109.35964 * 200.92543 * 11 10 9 39 39 H 1.09004 * 107.88612 * 196.93106 * 12 11 10 40 40 H 1.09002 * 108.10445 * 80.53763 * 12 11 10 41 41 H 0.97002 * 119.99716 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.84668 * 60.14236 * 22 7 6 43 43 H 1.08997 * 109.84709 * 299.16117 * 22 7 6 44 44 H 1.08999 * 109.47438 * 0.02562 * 26 25 2 45 45 H 1.08999 * 109.47146 * 59.99691 * 27 26 25 46 46 H 1.09001 * 109.47327 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47686 * 300.00073 * 27 26 25 48 48 H 1.08996 * 109.47502 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47252 * 300.00919 * 28 26 25 50 50 H 1.09001 * 109.46862 * 60.00268 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 0.0000 7 6 2.3375 4.8948 0.0001 8 1 1.4042 4.9600 -0.5591 9 6 3.3878 5.7374 -0.7163 10 6 2.6290 6.8679 -1.3487 11 6 2.6960 8.1378 -0.4652 12 6 2.5920 7.7519 1.0261 13 7 1.6361 6.7348 1.3562 14 6 0.3376 7.0655 1.6384 15 1 -0.1399 7.8774 1.1100 16 6 -0.3651 6.3572 2.6036 17 7 -1.6798 6.4119 2.6331 18 14 0.5553 5.3265 3.8606 19 1 0.6238 3.9191 3.3919 20 1 -0.1572 5.3806 5.1623 21 1 1.9310 5.8604 4.0267 22 6 2.0808 5.3006 1.3813 23 7 3.5984 0.6789 -0.0054 24 7 3.6299 -0.6083 -0.0001 25 7 2.3105 -1.0826 -0.0005 26 6 1.8864 -2.4849 -0.0006 27 6 2.4288 -3.1816 -1.2501 28 6 2.4296 -3.1821 1.2483 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 3.7293 3.2913 0.0004 33 1 4.1137 6.1239 -0.0007 34 1 3.8891 5.1449 -1.4816 35 1 3.0603 7.0874 -2.3254 36 1 1.5870 6.5742 -1.4748 37 1 3.6410 8.6515 -0.6421 38 1 1.8718 8.8024 -0.7247 39 1 2.3389 8.6511 1.5878 40 1 3.5742 7.4157 1.3583 41 1 -2.1708 5.9166 3.3073 42 1 2.9932 5.2064 1.9703 43 1 1.2964 4.6773 1.8105 44 1 0.7976 -2.5352 -0.0007 45 1 3.5176 -3.1312 -1.2504 46 1 2.1129 -4.2248 -1.2505 47 1 2.0420 -2.6849 -2.1399 48 1 2.1145 -4.2255 1.2480 49 1 3.5185 -3.1317 1.2481 50 1 2.0432 -2.6858 2.1385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034463439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:42 Heat of formation + Delta-G solvation = 81.660685 kcal Electronic energy + Delta-G solvation = -30433.243798 eV Core-core repulsion = 26498.456983 eV Total energy + Delta-G solvation = -3934.786815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.33032 -39.61586 -37.75023 -36.64760 -34.45759 -33.36603 -33.02247 -31.33873 -31.17407 -30.01997 -27.84374 -27.80307 -26.27596 -24.69771 -24.13581 -23.64644 -22.17296 -20.55986 -20.45439 -19.93828 -18.94022 -17.70335 -16.67928 -16.57291 -16.23487 -15.82996 -15.44187 -14.91239 -14.46788 -14.35003 -14.17316 -14.01446 -13.93955 -13.56098 -13.33332 -13.18087 -13.12723 -12.88896 -12.76643 -12.61059 -12.58794 -12.05221 -12.01633 -12.01071 -11.74755 -11.65660 -11.59692 -11.16354 -11.03321 -10.70230 -10.49350 -10.32210 -10.26477 -10.09417 -9.78757 -9.66182 -9.64264 -9.37206 -9.13393 -8.64066 -8.46341 -6.79235 -5.88554 -3.31486 1.08676 1.80845 1.85678 3.40373 3.45794 3.53427 3.58226 3.58728 3.94884 4.12729 4.29988 4.42117 4.52664 4.62702 4.74336 4.88773 5.00577 5.03885 5.12118 5.17233 5.18426 5.26618 5.36810 5.40089 5.50390 5.51638 5.58709 5.60865 5.64376 5.80660 5.91241 5.94370 5.98635 6.00907 6.18729 6.21809 6.36666 6.37856 6.60285 6.64261 6.69517 6.81008 6.82876 6.85332 6.99670 7.02007 7.76515 8.02882 8.11142 8.49610 8.56840 9.03319 9.79845 10.21938 11.27073 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.003536 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.278564 B = 7917.163234 C = 9006.507261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.122 3.878 3 C -0.101 4.101 4 C 0.595 3.405 5 O -0.523 6.523 6 N -0.717 5.717 7 C 0.132 3.868 8 H 0.095 0.905 9 C -0.119 4.119 10 C -0.108 4.108 11 C -0.144 4.144 12 C 0.156 3.844 13 N -0.593 5.593 14 C -0.266 4.266 15 H 0.081 0.919 16 C 0.039 3.961 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.269 1.269 22 C 0.112 3.888 23 N -0.206 5.206 24 N -0.071 5.071 25 N -0.360 5.360 26 C 0.144 3.856 27 C -0.161 4.161 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 -18.091 -7.617 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 C -0.241 4.241 4 C 0.378 3.622 5 O -0.398 6.398 6 N -0.368 5.368 7 C 0.028 3.972 8 H 0.113 0.887 9 C -0.157 4.157 10 C -0.146 4.146 11 C -0.184 4.184 12 C 0.027 3.973 13 N -0.315 5.315 14 C -0.394 4.394 15 H 0.099 0.901 16 C -0.161 4.161 17 N -0.544 5.544 18 Si 0.710 3.290 19 H -0.214 1.214 20 H -0.232 1.232 21 H -0.194 1.194 22 C -0.013 4.013 23 N -0.079 5.079 24 N -0.050 5.050 25 N -0.147 5.147 26 C 0.042 3.958 27 C -0.219 4.219 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.646 -18.331 -7.503 22.032 hybrid contribution -0.142 -0.750 0.687 1.027 sum 9.504 -19.081 -6.816 22.381 Atomic orbital electron populations 1.20760 0.84699 1.05573 1.04665 1.21964 0.96308 0.86329 0.96903 1.21396 0.88905 0.95747 1.18019 1.16798 0.85998 0.82423 0.76966 1.90852 1.15658 1.83230 1.50058 1.46291 1.09588 1.06599 1.74315 1.21024 0.98708 0.77494 1.00002 0.88725 1.21315 0.97710 0.97156 0.99528 1.21319 1.00787 0.95244 0.97291 1.22793 1.00050 0.96744 0.98846 1.20281 0.91837 0.92663 0.92479 1.44091 1.08390 0.98954 1.80086 1.18763 0.86102 1.18430 1.16133 0.90136 1.25363 0.95104 0.98207 0.97461 1.69833 1.05538 1.43556 1.35429 0.86874 0.80449 0.80092 0.81569 1.21437 1.23158 1.19405 1.21111 0.98721 0.87522 0.93907 1.74579 1.19187 1.04143 1.09992 1.81855 0.96405 1.03336 1.23389 1.50581 1.06313 1.07128 1.50672 1.21624 1.00545 0.75390 0.98220 1.22148 1.03145 1.00801 0.95840 1.22162 1.03179 1.00822 0.95935 0.89001 0.90900 0.86531 0.76544 0.90930 0.91772 0.93532 0.91255 0.93015 0.92545 0.93427 0.95367 0.92828 0.94706 0.90353 0.87271 0.90738 0.89973 0.91719 0.89957 0.90723 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.41 36.01 0.34 -0.76 16 2 C 0.12 1.65 7.02 -81.87 -0.57 1.07 16 3 C -0.10 -1.64 6.99 -83.55 -0.58 -2.22 16 4 C 0.60 11.13 7.73 -12.48 -0.10 11.03 16 5 O -0.52 -11.44 14.25 5.28 0.08 -11.36 16 6 N -0.72 -12.43 4.87 -58.27 -0.28 -12.71 16 7 C 0.13 2.53 2.01 -71.39 -0.14 2.39 16 8 H 0.09 2.11 6.22 -51.93 -0.32 1.79 16 9 C -0.12 -1.87 5.25 -28.40 -0.15 -2.02 16 10 C -0.11 -1.77 5.65 -27.19 -0.15 -1.93 16 11 C -0.14 -2.42 6.40 -25.02 -0.16 -2.58 16 12 C 0.16 3.11 5.13 -4.93 -0.03 3.08 16 13 N -0.59 -14.24 2.21 -175.41 -0.39 -14.63 16 14 C -0.27 -7.57 9.98 -15.06 -0.15 -7.72 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 16 C 0.04 1.16 5.29 -17.43 -0.09 1.07 16 17 N -0.90 -28.36 13.97 55.49 0.78 -27.59 16 18 Si 0.88 23.45 24.71 -169.99 -4.20 19.25 16 19 H -0.29 -7.69 6.70 56.52 0.38 -7.31 16 20 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 21 H -0.27 -6.97 7.06 56.52 0.40 -6.57 16 22 C 0.11 2.53 3.44 -5.21 -0.02 2.51 16 23 N -0.21 -3.23 12.04 32.85 0.40 -2.84 16 24 N -0.07 -1.00 13.67 60.35 0.82 -0.17 16 25 N -0.36 -4.17 3.28 -50.41 -0.17 -4.33 16 26 C 0.14 1.03 3.68 -67.93 -0.25 0.78 16 27 C -0.16 -0.94 9.47 37.16 0.35 -0.59 16 28 C -0.16 -1.02 9.47 37.16 0.35 -0.67 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 31 H 0.12 1.67 6.43 -51.93 -0.33 1.33 16 32 H 0.40 5.97 8.30 -40.82 -0.34 5.63 16 33 H 0.07 1.10 6.28 -51.93 -0.33 0.77 16 34 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.32 6.82 -51.93 -0.35 0.96 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.98 8.00 -51.93 -0.42 0.56 16 40 H 0.03 0.52 6.89 -51.93 -0.36 0.16 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.03 0.75 8.11 -51.92 -0.42 0.33 16 43 H 0.08 2.04 4.14 -51.93 -0.22 1.83 16 44 H 0.11 0.56 6.79 -51.93 -0.35 0.21 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -34.84 387.76 -6.52 -41.35 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.04 Total: 3.76 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.35 Total: 3.43 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 1.16 Total: -62.27 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.20 Total: 19.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.84 -6.52 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034463439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.014 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds