Wall clock time and date at job start Tue Mar 31 2020 18:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36598 * 126.57761 * 2 1 4 4 C 1.47516 * 125.77177 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00130 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99909 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.08998 * 108.45958 * 327.28523 * 7 6 4 9 9 C 1.52527 * 108.51994 * 209.71955 * 7 6 4 10 10 C 1.50124 * 105.41550 * 149.34943 * 9 7 6 11 11 C 1.54847 * 110.81560 * 97.67853 * 10 9 7 12 12 C 1.54401 * 110.07111 * 321.07947 * 11 10 9 13 13 N 1.43430 * 116.38872 * 318.64643 * 12 11 10 14 14 C 1.36933 * 120.54018 * 271.73308 * 13 12 11 15 15 H 1.08001 * 119.99943 * 35.77448 * 14 13 12 16 16 C 1.38812 * 120.00346 * 215.77974 * 14 13 12 17 17 N 1.31620 * 120.00182 * 198.35185 * 16 14 13 18 18 Si 1.86805 * 119.99890 * 18.34941 * 16 14 13 19 19 H 1.48500 * 109.46917 * 264.79312 * 18 16 14 20 20 H 1.48493 * 109.47245 * 144.79322 * 18 16 14 21 21 H 1.48497 * 109.47248 * 24.79160 * 18 16 14 22 22 C 1.46231 * 108.52434 * 84.99925 * 7 6 4 23 23 N 1.34403 * 108.45630 * 180.24476 * 3 2 1 24 24 N 1.28764 * 109.52161 * 359.58844 * 23 3 2 25 25 N 1.34816 * 126.57952 * 180.02562 * 2 1 3 26 26 C 1.46496 * 126.59421 * 359.97438 * 25 2 1 27 27 C 1.52998 * 109.46970 * 120.00383 * 26 25 2 28 28 C 1.53001 * 109.47401 * 240.00013 * 26 25 2 29 29 H 1.08993 * 109.47089 * 89.97206 * 1 2 3 30 30 H 1.09000 * 109.46673 * 209.97514 * 1 2 3 31 31 H 1.09000 * 109.46968 * 329.97191 * 1 2 3 32 32 H 0.96998 * 120.00485 * 0.02562 * 6 4 3 33 33 H 1.09007 * 110.24688 * 268.32288 * 9 7 6 34 34 H 1.08999 * 110.25096 * 30.37985 * 9 7 6 35 35 H 1.08996 * 109.21372 * 218.02735 * 10 9 7 36 36 H 1.08999 * 109.20918 * 337.38788 * 10 9 7 37 37 H 1.09002 * 109.35413 * 81.34398 * 11 10 9 38 38 H 1.09002 * 109.35964 * 200.92543 * 11 10 9 39 39 H 1.09004 * 107.88612 * 196.93106 * 12 11 10 40 40 H 1.09002 * 108.10445 * 80.53763 * 12 11 10 41 41 H 0.97002 * 119.99716 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.84668 * 60.14236 * 22 7 6 43 43 H 1.08997 * 109.84709 * 299.16117 * 22 7 6 44 44 H 1.08999 * 109.47438 * 0.02562 * 26 25 2 45 45 H 1.08999 * 109.47146 * 59.99691 * 27 26 25 46 46 H 1.09001 * 109.47327 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47686 * 300.00073 * 27 26 25 48 48 H 1.08996 * 109.47502 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47252 * 300.00919 * 28 26 25 50 50 H 1.09001 * 109.46862 * 60.00268 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 0.0000 7 6 2.3375 4.8948 0.0001 8 1 1.4042 4.9600 -0.5591 9 6 3.3878 5.7374 -0.7163 10 6 2.6290 6.8679 -1.3487 11 6 2.6960 8.1378 -0.4652 12 6 2.5920 7.7519 1.0261 13 7 1.6361 6.7348 1.3562 14 6 0.3376 7.0655 1.6384 15 1 -0.1399 7.8774 1.1100 16 6 -0.3651 6.3572 2.6036 17 7 -1.6798 6.4119 2.6331 18 14 0.5553 5.3265 3.8606 19 1 0.6238 3.9191 3.3919 20 1 -0.1572 5.3806 5.1623 21 1 1.9310 5.8604 4.0267 22 6 2.0808 5.3006 1.3813 23 7 3.5984 0.6789 -0.0054 24 7 3.6299 -0.6083 -0.0001 25 7 2.3105 -1.0826 -0.0005 26 6 1.8864 -2.4849 -0.0006 27 6 2.4288 -3.1816 -1.2501 28 6 2.4296 -3.1821 1.2483 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 3.7293 3.2913 0.0004 33 1 4.1137 6.1239 -0.0007 34 1 3.8891 5.1449 -1.4816 35 1 3.0603 7.0874 -2.3254 36 1 1.5870 6.5742 -1.4748 37 1 3.6410 8.6515 -0.6421 38 1 1.8718 8.8024 -0.7247 39 1 2.3389 8.6511 1.5878 40 1 3.5742 7.4157 1.3583 41 1 -2.1708 5.9166 3.3073 42 1 2.9932 5.2064 1.9703 43 1 1.2964 4.6773 1.8105 44 1 0.7976 -2.5352 -0.0007 45 1 3.5176 -3.1312 -1.2504 46 1 2.1129 -4.2248 -1.2505 47 1 2.0420 -2.6849 -2.1399 48 1 2.1145 -4.2255 1.2480 49 1 3.5185 -3.1317 1.2481 50 1 2.0432 -2.6858 2.1385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034463439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:41 Heat of formation + Delta-G solvation = 56.254504 kcal Electronic energy + Delta-G solvation = -30434.345493 eV Core-core repulsion = 26498.456983 eV Total energy + Delta-G solvation = -3935.888510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.39886 -41.12375 -39.31048 -37.40771 -36.11858 -35.02948 -34.03595 -33.24818 -32.51739 -31.29510 -28.87447 -28.30237 -28.12870 -26.27563 -25.26271 -24.94425 -23.65201 -22.11134 -21.61305 -21.11180 -20.43575 -18.80170 -18.67959 -17.81524 -17.31665 -17.24665 -17.16022 -16.13583 -15.79727 -15.73435 -15.51909 -15.36850 -15.17061 -14.97002 -14.61624 -14.44324 -14.22488 -14.08911 -14.05274 -13.62744 -13.52398 -13.33922 -13.28238 -13.21566 -13.04829 -12.85489 -12.58302 -12.55975 -12.47252 -12.25071 -11.98349 -11.86091 -11.81467 -11.59538 -11.29175 -11.20014 -11.13990 -11.06505 -10.73608 -10.36311 -10.04636 -8.79808 -8.19612 -5.57434 0.04976 0.56937 0.98140 1.27894 1.32320 1.43927 2.05278 2.20793 2.40552 2.99577 3.11045 3.26769 3.42549 3.51295 3.66804 3.73537 3.78162 3.94433 4.06450 4.07389 4.17216 4.37439 4.41872 4.49249 4.50680 4.51840 4.58203 4.60301 4.61315 4.63425 4.72707 4.81891 4.83368 4.88481 5.00265 5.05945 5.14600 5.15451 5.19252 5.22945 5.28090 5.34484 5.45230 5.49464 5.53661 5.59938 5.93322 6.19256 6.43561 6.86693 6.96046 7.17813 7.61176 8.08796 9.00326 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.003536 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.278564 B = 7917.163234 C = 9006.507261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.128 3.872 3 C -0.130 4.130 4 C 0.592 3.408 5 O -0.565 6.565 6 N -0.707 5.707 7 C 0.142 3.858 8 H 0.055 0.945 9 C -0.107 4.107 10 C -0.106 4.106 11 C -0.135 4.135 12 C 0.144 3.856 13 N -0.604 5.604 14 C -0.248 4.248 15 H 0.046 0.954 16 C -0.019 4.019 17 N -0.950 5.950 18 Si 0.942 3.058 19 H -0.295 1.295 20 H -0.306 1.306 21 H -0.252 1.252 22 C 0.115 3.885 23 N -0.218 5.218 24 N -0.078 5.078 25 N -0.344 5.344 26 C 0.129 3.871 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.415 0.585 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.138 0.862 45 H 0.060 0.940 46 H 0.114 0.886 47 H 0.058 0.942 48 H 0.115 0.885 49 H 0.060 0.940 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 -20.348 -8.341 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 C -0.270 4.270 4 C 0.377 3.623 5 O -0.443 6.443 6 N -0.359 5.359 7 C 0.037 3.963 8 H 0.074 0.926 9 C -0.144 4.144 10 C -0.144 4.144 11 C -0.175 4.175 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.378 4.378 15 H 0.064 0.936 16 C -0.214 4.214 17 N -0.595 5.595 18 Si 0.772 3.228 19 H -0.223 1.223 20 H -0.234 1.234 21 H -0.175 1.175 22 C -0.009 4.009 23 N -0.091 5.091 24 N -0.057 5.057 25 N -0.131 5.131 26 C 0.030 3.970 27 C -0.215 4.215 28 C -0.217 4.217 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.156 0.844 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.077 0.923 48 H 0.133 0.867 49 H 0.079 0.921 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.490 -20.602 -8.245 25.464 hybrid contribution -1.002 -0.125 0.823 1.302 sum 11.488 -20.727 -7.422 24.833 Atomic orbital electron populations 1.20794 0.83172 1.05725 1.05696 1.22236 0.97216 0.86185 0.95502 1.21175 0.89942 0.95046 1.20795 1.17169 0.85528 0.83668 0.75977 1.90835 1.17400 1.84099 1.51952 1.46123 1.10219 1.05700 1.73836 1.20687 0.98777 0.79160 0.97689 0.92649 1.21299 0.96642 0.96356 1.00125 1.21289 0.98988 0.95171 0.98996 1.22701 1.01532 0.96967 0.96326 1.20547 0.91889 0.91169 0.94608 1.44160 1.07438 1.00643 1.80576 1.18669 0.87952 1.16618 1.14561 0.93595 1.25958 0.95655 1.00285 0.99551 1.69955 1.07066 1.45857 1.36649 0.85868 0.79935 0.78143 0.78874 1.22341 1.23432 1.17534 1.21048 0.97885 0.85975 0.96038 1.74537 1.19047 1.04881 1.10659 1.81755 0.97926 1.02758 1.23300 1.50933 1.05062 1.08362 1.48730 1.22239 1.02389 0.72993 0.99379 1.22153 1.02172 1.02434 0.94697 1.22176 1.02220 1.02511 0.94834 0.87442 0.87014 0.90003 0.74841 0.89174 0.88883 0.90263 0.95023 0.88953 0.94236 0.94588 0.92441 0.93060 0.92736 0.94212 0.84441 0.92117 0.86770 0.92311 0.86687 0.92097 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 9.41 71.24 0.67 -1.36 16 2 C 0.13 3.32 7.02 41.72 0.29 3.62 16 3 C -0.13 -4.21 6.99 40.81 0.29 -3.92 16 4 C 0.59 22.63 7.73 86.69 0.67 23.30 16 5 O -0.56 -26.00 14.25 -4.01 -0.06 -26.06 16 6 N -0.71 -24.27 4.87 -456.52 -2.22 -26.50 16 7 C 0.14 5.41 2.01 42.75 0.09 5.50 16 8 H 0.06 2.58 6.22 -2.39 -0.01 2.57 16 9 C -0.11 -3.04 5.25 29.51 0.15 -2.88 16 10 C -0.11 -3.27 5.65 30.30 0.17 -3.10 16 11 C -0.14 -4.26 6.40 31.70 0.20 -4.06 16 12 C 0.14 5.54 5.13 87.42 0.45 5.99 16 13 N -0.60 -29.22 2.21 -708.86 -1.57 -30.78 16 14 C -0.25 -14.70 9.98 84.03 0.84 -13.86 16 15 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 16 C -0.02 -1.15 5.29 84.86 0.45 -0.70 16 17 N -0.95 -62.73 13.97 21.65 0.30 -62.43 16 18 Si 0.94 50.22 24.71 68.60 1.69 51.92 16 19 H -0.30 -16.01 6.70 99.48 0.67 -15.35 16 20 H -0.31 -16.21 7.11 99.48 0.71 -15.51 16 21 H -0.25 -12.48 7.06 99.48 0.70 -11.78 16 22 C 0.11 5.17 3.44 83.58 0.29 5.46 16 23 N -0.22 -6.70 12.04 -50.00 -0.60 -7.30 16 24 N -0.08 -2.11 13.67 37.02 0.51 -1.60 16 25 N -0.34 -7.36 3.28 -313.39 -1.03 -8.39 16 26 C 0.13 1.46 3.68 44.99 0.17 1.62 16 27 C -0.16 -1.36 9.47 71.98 0.68 -0.68 16 28 C -0.16 -1.55 9.47 71.98 0.68 -0.87 16 29 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.11 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.08 2.42 6.43 -2.39 -0.02 2.41 16 32 H 0.41 11.76 8.30 -92.71 -0.77 10.99 16 33 H 0.09 2.32 6.28 -2.38 -0.01 2.30 16 34 H 0.09 2.17 8.04 -2.39 -0.02 2.15 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.21 6.82 -2.39 -0.02 1.19 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 40 H 0.06 1.89 6.89 -2.39 -0.02 1.87 16 41 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 42 H 0.05 2.23 8.11 -2.38 -0.02 2.21 16 43 H 0.04 2.11 4.14 -2.39 -0.01 2.10 16 44 H 0.14 0.82 6.79 -2.39 -0.02 0.81 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 48 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -82.23 387.76 3.25 -78.98 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.14 Total: 18.12 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.09 Total: 14.04 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -4.61 Total: -137.00 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.06 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.69 Total: 51.92 kcal Total: -82.23 3.25 -78.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034463439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.235 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds