Wall clock time and date at job start Tue Mar 31 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36601 * 126.57625 * 2 1 4 4 C 1.47521 * 125.76997 * 0.02562 * 3 2 1 5 5 O 1.21593 * 120.00329 * 0.23826 * 4 3 2 6 6 N 1.34773 * 119.99699 * 180.24278 * 4 3 2 7 7 C 1.46504 * 119.99898 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.32557 * 35.00033 * 7 6 4 9 9 C 1.47103 * 109.32616 * 154.64904 * 7 6 4 10 10 C 1.52571 * 114.32104 * 183.05831 * 9 7 6 11 11 C 1.50879 * 109.35734 * 274.98076 * 10 9 7 12 12 C 1.53955 * 110.09060 * 91.89344 * 11 10 9 13 13 N 1.47601 * 112.14193 * 319.43861 * 12 11 10 14 14 C 1.36935 * 118.64619 * 137.86976 * 13 12 11 15 15 H 1.07999 * 120.00129 * 206.50417 * 14 13 12 16 16 C 1.38816 * 119.99870 * 26.50394 * 14 13 12 17 17 N 1.31621 * 119.99795 * 15.67626 * 16 14 13 18 18 Si 1.86793 * 119.99996 * 195.67659 * 16 14 13 19 19 H 1.48503 * 109.47204 * 59.99693 * 18 16 14 20 20 H 1.48500 * 109.47467 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47361 * 300.00206 * 18 16 14 22 22 C 1.44667 * 122.54221 * 317.85458 * 13 12 11 23 23 N 1.34402 * 108.45315 * 180.23189 * 3 2 1 24 24 N 1.28759 * 109.52697 * 359.77406 * 23 3 2 25 25 N 1.34807 * 126.58386 * 179.84444 * 2 1 3 26 26 C 1.46508 * 126.59203 * 0.03955 * 25 2 1 27 27 C 1.53003 * 109.46751 * 119.71100 * 26 25 2 28 28 C 1.53004 * 109.46866 * 239.71001 * 26 25 2 29 29 H 1.09009 * 109.46996 * 270.14867 * 1 2 3 30 30 H 1.08993 * 109.47220 * 30.15762 * 1 2 3 31 31 H 1.08997 * 109.46759 * 150.15759 * 1 2 3 32 32 H 0.97003 * 120.00309 * 359.97438 * 6 4 3 33 33 H 1.08993 * 108.50968 * 304.31249 * 9 7 6 34 34 H 1.08999 * 108.51239 * 61.96509 * 9 7 6 35 35 H 1.09003 * 109.49047 * 34.95428 * 10 9 7 36 36 H 1.09006 * 109.48435 * 155.02056 * 10 9 7 37 37 H 1.08996 * 109.36881 * 212.08189 * 11 10 9 38 38 H 1.09004 * 109.36855 * 331.83500 * 11 10 9 39 39 H 1.08994 * 108.94500 * 80.12261 * 12 11 10 40 40 H 1.08997 * 108.94632 * 198.75032 * 12 11 10 41 41 H 0.97003 * 119.99436 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.61469 * 330.84417 * 22 13 12 43 43 H 1.08998 * 109.32557 * 210.90438 * 22 13 12 44 44 H 1.08998 * 109.46969 * 359.70660 * 26 25 2 45 45 H 1.09002 * 109.46474 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47065 * 299.99590 * 27 26 25 47 47 H 1.09000 * 109.47270 * 60.00259 * 27 26 25 48 48 H 1.08996 * 109.47205 * 60.00103 * 28 26 25 49 49 H 1.09003 * 109.46788 * 180.02562 * 28 26 25 50 50 H 1.09002 * 109.46739 * 300.00003 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7628 0.0054 6 7 2.7816 3.4988 -0.0045 7 6 2.3373 4.8948 -0.0045 8 1 1.4274 4.9839 0.5891 9 6 3.3875 5.7399 0.5845 10 6 3.0124 7.2136 0.7082 11 6 3.3082 7.9160 -0.5939 12 6 2.0614 7.9027 -1.4971 13 7 1.3521 6.6092 -1.4471 14 6 -0.0160 6.6127 -1.3876 15 1 -0.5389 5.7833 -0.9348 16 6 -0.7307 7.6822 -1.9094 17 7 -0.1419 8.5327 -2.7233 18 14 -2.5279 7.9143 -1.4566 19 1 -2.6500 8.0843 0.0137 20 1 -3.0587 9.1213 -2.1397 21 1 -3.3039 6.7222 -1.8830 22 6 2.0463 5.3401 -1.4589 23 7 3.5984 0.6789 -0.0052 24 7 3.6300 -0.6083 -0.0036 25 7 2.3105 -1.0825 0.0029 26 6 1.8865 -2.4849 0.0059 27 6 2.4239 -3.1828 -1.2451 28 6 2.4346 -3.1807 1.2535 29 1 -0.3633 0.0027 1.0278 30 1 -0.3633 0.8885 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 3.7291 3.2914 -0.0081 33 1 3.6224 5.3579 1.5778 34 1 4.2812 5.6634 -0.0349 35 1 1.9498 7.3006 0.9353 36 1 3.5943 7.6709 1.5085 37 1 3.5964 8.9474 -0.3909 38 1 4.1260 7.4054 -1.1024 39 1 1.3821 8.6915 -1.1743 40 1 2.3668 8.0994 -2.5247 41 1 -0.6413 9.2803 -3.0876 42 1 2.9857 5.4418 -2.0022 43 1 1.4229 4.5925 -1.9495 44 1 0.7977 -2.5352 0.0107 45 1 2.1088 -4.2262 -1.2426 46 1 2.0334 -2.6870 -2.1338 47 1 3.5128 -3.1324 -1.2498 48 1 2.0518 -2.6835 2.1446 49 1 2.1195 -4.2242 1.2555 50 1 3.5235 -3.1303 1.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034463442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:47 Heat of formation + Delta-G solvation = 71.229277 kcal Electronic energy + Delta-G solvation = -29977.850959 eV Core-core repulsion = 26042.611804 eV Total energy + Delta-G solvation = -3935.239155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.33945 -39.37270 -37.53346 -36.65764 -34.53043 -33.27596 -32.96411 -31.32893 -30.76570 -29.86940 -27.85873 -27.82211 -25.91529 -24.33986 -24.13612 -23.41689 -22.34107 -20.53510 -20.02953 -19.83954 -19.07219 -17.67734 -16.57049 -16.49851 -16.26436 -15.79127 -14.97560 -14.90932 -14.57663 -14.25044 -14.21015 -13.88031 -13.63806 -13.43274 -13.30293 -13.18768 -13.06000 -12.77967 -12.69314 -12.52313 -12.44060 -12.05478 -12.03407 -12.00529 -11.67305 -11.45726 -11.15502 -10.98733 -10.83419 -10.68863 -10.51569 -10.31015 -10.08142 -10.02973 -9.66907 -9.62644 -9.54578 -9.49647 -9.14691 -8.67810 -8.23913 -6.55512 -5.67517 -3.10553 1.07506 1.80578 1.84584 3.45207 3.48105 3.51605 3.55372 3.58217 3.93767 4.11288 4.28429 4.40393 4.51584 4.61218 4.77044 4.87729 4.99170 5.07844 5.17033 5.23513 5.33642 5.34523 5.44788 5.48882 5.54593 5.59428 5.60988 5.62513 5.78021 5.83392 5.96379 6.10168 6.12479 6.25875 6.34988 6.40864 6.48457 6.67593 6.72023 6.82355 6.84557 6.91982 7.01825 7.20336 7.53270 7.78792 7.80518 7.98407 8.04549 8.57440 8.60469 9.35601 10.01091 10.45661 11.40212 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002933 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.930067 B = 9543.429699 C =10732.553542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.121 3.879 3 C -0.100 4.100 4 C 0.598 3.402 5 O -0.528 6.528 6 N -0.707 5.707 7 C 0.116 3.884 8 H 0.089 0.911 9 C -0.113 4.113 10 C -0.100 4.100 11 C -0.144 4.144 12 C 0.176 3.824 13 N -0.584 5.584 14 C -0.253 4.253 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.907 5.907 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.283 1.283 22 C 0.158 3.842 23 N -0.206 5.206 24 N -0.071 5.071 25 N -0.359 5.359 26 C 0.144 3.856 27 C -0.163 4.163 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -21.364 7.063 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.381 3.619 5 O -0.403 6.403 6 N -0.357 5.357 7 C 0.010 3.990 8 H 0.107 0.893 9 C -0.151 4.151 10 C -0.138 4.138 11 C -0.183 4.183 12 C 0.051 3.949 13 N -0.304 5.304 14 C -0.383 4.383 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.552 5.552 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.209 1.209 22 C 0.028 3.972 23 N -0.079 5.079 24 N -0.050 5.050 25 N -0.147 5.147 26 C 0.042 3.958 27 C -0.221 4.221 28 C -0.220 4.220 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.740 -21.411 6.948 23.497 hybrid contribution -1.351 0.102 0.197 1.369 sum 5.389 -21.309 7.144 23.112 Atomic orbital electron populations 1.20741 0.84756 1.05463 1.04598 1.21948 0.96265 0.86345 0.97089 1.21415 0.88845 0.95794 1.17893 1.16695 0.85902 0.82248 0.77008 1.90816 1.15719 1.83265 1.50506 1.45959 1.09433 1.06477 1.73788 1.21288 0.98045 0.77406 1.02294 0.89251 1.20585 0.98360 0.96434 0.99735 1.20825 1.02659 0.93140 0.97173 1.22086 1.00398 0.98965 0.96833 1.21050 0.90402 0.88202 0.95222 1.43599 1.02778 0.99091 1.84981 1.19278 0.81862 1.05559 1.31589 0.91275 1.25012 0.97683 0.99595 0.97192 1.70077 1.36105 1.16949 1.32081 0.86388 0.85330 0.77092 0.78106 1.21076 1.21843 1.20894 1.20935 0.95530 0.89184 0.91561 1.74588 1.19245 1.04125 1.09975 1.81869 0.96385 1.03361 1.23384 1.50586 1.06334 1.07120 1.50643 1.21621 1.00501 0.75426 0.98207 1.22163 1.03226 1.00808 0.95901 1.22149 1.03142 1.00802 0.95870 0.89135 0.86542 0.90975 0.76690 0.93345 0.92726 0.90466 0.93431 0.92954 0.93659 0.90676 0.95798 0.93794 0.94989 0.93326 0.87303 0.89990 0.91638 0.90716 0.91729 0.89987 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.40 36.01 0.34 -0.62 16 2 C 0.12 1.50 7.02 -81.87 -0.57 0.92 16 3 C -0.10 -1.51 6.99 -83.55 -0.58 -2.09 16 4 C 0.60 10.41 7.77 -12.48 -0.10 10.31 16 5 O -0.53 -10.61 14.38 5.28 0.08 -10.54 16 6 N -0.71 -11.67 5.05 -56.67 -0.29 -11.96 16 7 C 0.12 2.17 2.34 -69.78 -0.16 2.01 16 8 H 0.09 1.95 7.57 -51.93 -0.39 1.55 16 9 C -0.11 -1.85 4.55 -29.78 -0.14 -1.99 16 10 C -0.10 -1.75 5.51 -28.02 -0.15 -1.91 16 11 C -0.14 -2.70 5.71 -27.30 -0.16 -2.86 16 12 C 0.18 4.22 4.66 -2.94 -0.01 4.21 16 13 N -0.58 -14.69 2.27 -172.03 -0.39 -15.08 16 14 C -0.25 -7.09 9.45 -15.06 -0.14 -7.23 16 15 H 0.07 1.98 7.88 -52.49 -0.41 1.57 16 16 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 17 N -0.91 -26.63 11.01 55.49 0.61 -26.02 16 18 Si 0.90 22.37 29.58 -169.99 -5.03 17.34 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.16 3.46 5.24 -4.04 -0.02 3.44 16 23 N -0.21 -3.09 12.04 32.85 0.40 -2.70 16 24 N -0.07 -0.95 13.67 60.35 0.82 -0.13 16 25 N -0.36 -3.87 3.28 -50.40 -0.17 -4.04 16 26 C 0.14 0.93 3.68 -67.92 -0.25 0.68 16 27 C -0.16 -0.92 9.47 37.16 0.35 -0.56 16 28 C -0.16 -0.87 9.47 37.16 0.35 -0.52 16 29 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.12 1.46 6.44 -51.93 -0.33 1.12 16 31 H 0.07 0.48 7.19 -51.93 -0.37 0.11 16 32 H 0.40 5.79 8.26 -40.82 -0.34 5.46 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 35 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.80 7.31 -51.93 -0.38 0.42 16 39 H 0.07 2.00 6.33 -51.93 -0.33 1.67 16 40 H 0.02 0.62 8.03 -51.93 -0.42 0.21 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.05 1.17 7.97 -51.93 -0.41 0.75 16 44 H 0.11 0.48 6.79 -51.93 -0.35 0.12 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -32.83 395.11 -7.64 -40.47 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.29 Total: 2.90 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.33 Total: 3.79 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.99 Total: -59.92 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.83 -7.64 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034463442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.697 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds