Wall clock time and date at job start Tue Mar 31 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36601 * 126.57625 * 2 1 4 4 C 1.47521 * 125.76997 * 0.02562 * 3 2 1 5 5 O 1.21593 * 120.00329 * 0.23826 * 4 3 2 6 6 N 1.34773 * 119.99699 * 180.24278 * 4 3 2 7 7 C 1.46504 * 119.99898 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.32557 * 35.00033 * 7 6 4 9 9 C 1.47103 * 109.32616 * 154.64904 * 7 6 4 10 10 C 1.52571 * 114.32104 * 183.05831 * 9 7 6 11 11 C 1.50879 * 109.35734 * 274.98076 * 10 9 7 12 12 C 1.53955 * 110.09060 * 91.89344 * 11 10 9 13 13 N 1.47601 * 112.14193 * 319.43861 * 12 11 10 14 14 C 1.36935 * 118.64619 * 137.86976 * 13 12 11 15 15 H 1.07999 * 120.00129 * 206.50417 * 14 13 12 16 16 C 1.38816 * 119.99870 * 26.50394 * 14 13 12 17 17 N 1.31621 * 119.99795 * 15.67626 * 16 14 13 18 18 Si 1.86793 * 119.99996 * 195.67659 * 16 14 13 19 19 H 1.48503 * 109.47204 * 59.99693 * 18 16 14 20 20 H 1.48500 * 109.47467 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47361 * 300.00206 * 18 16 14 22 22 C 1.44667 * 122.54221 * 317.85458 * 13 12 11 23 23 N 1.34402 * 108.45315 * 180.23189 * 3 2 1 24 24 N 1.28759 * 109.52697 * 359.77406 * 23 3 2 25 25 N 1.34807 * 126.58386 * 179.84444 * 2 1 3 26 26 C 1.46508 * 126.59203 * 0.03955 * 25 2 1 27 27 C 1.53003 * 109.46751 * 119.71100 * 26 25 2 28 28 C 1.53004 * 109.46866 * 239.71001 * 26 25 2 29 29 H 1.09009 * 109.46996 * 270.14867 * 1 2 3 30 30 H 1.08993 * 109.47220 * 30.15762 * 1 2 3 31 31 H 1.08997 * 109.46759 * 150.15759 * 1 2 3 32 32 H 0.97003 * 120.00309 * 359.97438 * 6 4 3 33 33 H 1.08993 * 108.50968 * 304.31249 * 9 7 6 34 34 H 1.08999 * 108.51239 * 61.96509 * 9 7 6 35 35 H 1.09003 * 109.49047 * 34.95428 * 10 9 7 36 36 H 1.09006 * 109.48435 * 155.02056 * 10 9 7 37 37 H 1.08996 * 109.36881 * 212.08189 * 11 10 9 38 38 H 1.09004 * 109.36855 * 331.83500 * 11 10 9 39 39 H 1.08994 * 108.94500 * 80.12261 * 12 11 10 40 40 H 1.08997 * 108.94632 * 198.75032 * 12 11 10 41 41 H 0.97003 * 119.99436 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.61469 * 330.84417 * 22 13 12 43 43 H 1.08998 * 109.32557 * 210.90438 * 22 13 12 44 44 H 1.08998 * 109.46969 * 359.70660 * 26 25 2 45 45 H 1.09002 * 109.46474 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47065 * 299.99590 * 27 26 25 47 47 H 1.09000 * 109.47270 * 60.00259 * 27 26 25 48 48 H 1.08996 * 109.47205 * 60.00103 * 28 26 25 49 49 H 1.09003 * 109.46788 * 180.02562 * 28 26 25 50 50 H 1.09002 * 109.46739 * 300.00003 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7628 0.0054 6 7 2.7816 3.4988 -0.0045 7 6 2.3373 4.8948 -0.0045 8 1 1.4274 4.9839 0.5891 9 6 3.3875 5.7399 0.5845 10 6 3.0124 7.2136 0.7082 11 6 3.3082 7.9160 -0.5939 12 6 2.0614 7.9027 -1.4971 13 7 1.3521 6.6092 -1.4471 14 6 -0.0160 6.6127 -1.3876 15 1 -0.5389 5.7833 -0.9348 16 6 -0.7307 7.6822 -1.9094 17 7 -0.1419 8.5327 -2.7233 18 14 -2.5279 7.9143 -1.4566 19 1 -2.6500 8.0843 0.0137 20 1 -3.0587 9.1213 -2.1397 21 1 -3.3039 6.7222 -1.8830 22 6 2.0463 5.3401 -1.4589 23 7 3.5984 0.6789 -0.0052 24 7 3.6300 -0.6083 -0.0036 25 7 2.3105 -1.0825 0.0029 26 6 1.8865 -2.4849 0.0059 27 6 2.4239 -3.1828 -1.2451 28 6 2.4346 -3.1807 1.2535 29 1 -0.3633 0.0027 1.0278 30 1 -0.3633 0.8885 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 3.7291 3.2914 -0.0081 33 1 3.6224 5.3579 1.5778 34 1 4.2812 5.6634 -0.0349 35 1 1.9498 7.3006 0.9353 36 1 3.5943 7.6709 1.5085 37 1 3.5964 8.9474 -0.3909 38 1 4.1260 7.4054 -1.1024 39 1 1.3821 8.6915 -1.1743 40 1 2.3668 8.0994 -2.5247 41 1 -0.6413 9.2803 -3.0876 42 1 2.9857 5.4418 -2.0022 43 1 1.4229 4.5925 -1.9495 44 1 0.7977 -2.5352 0.0107 45 1 2.1088 -4.2262 -1.2426 46 1 2.0334 -2.6870 -2.1338 47 1 3.5128 -3.1324 -1.2498 48 1 2.0518 -2.6835 2.1446 49 1 2.1195 -4.2242 1.2555 50 1 3.5235 -3.1303 1.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034463442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:46 Heat of formation + Delta-G solvation = 49.387024 kcal Electronic energy + Delta-G solvation = -29978.798110 eV Core-core repulsion = 26042.611804 eV Total energy + Delta-G solvation = -3936.186306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.34285 -40.83328 -39.12945 -37.36597 -36.22879 -34.83625 -33.97541 -32.89032 -32.33458 -31.22052 -28.82862 -28.27664 -27.83584 -25.96183 -25.13987 -24.93309 -23.70394 -21.67235 -21.39078 -21.09474 -20.69054 -18.69635 -18.56396 -17.61496 -17.30932 -17.16727 -16.56896 -16.40275 -15.77391 -15.58904 -15.34288 -15.18628 -15.14070 -14.71280 -14.31510 -14.20625 -14.08020 -14.00851 -13.99381 -13.78651 -13.24328 -13.19431 -13.09324 -12.99246 -12.97474 -12.76976 -12.53669 -12.46744 -12.42447 -12.30323 -12.02091 -11.94055 -11.64090 -11.45260 -11.37194 -11.15429 -11.13105 -11.02686 -10.49977 -10.28338 -10.01030 -8.61534 -7.84199 -5.30152 0.11029 0.63036 1.03568 1.45566 1.47520 1.55022 2.13652 2.27746 2.54377 3.15143 3.28355 3.31220 3.54612 3.70316 3.77940 3.81118 3.92623 3.97713 4.10310 4.12719 4.28028 4.41203 4.52429 4.55747 4.58174 4.63376 4.64058 4.69268 4.73110 4.75296 4.76900 4.85821 5.00957 5.06075 5.09303 5.15491 5.18070 5.22324 5.24285 5.28866 5.37215 5.43999 5.56278 5.65467 5.66941 5.72759 5.85034 6.42964 6.51633 6.92580 7.20814 7.24755 7.96070 8.33237 9.20448 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002933 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.930067 B = 9543.429699 C =10732.553542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.129 3.871 3 C -0.128 4.128 4 C 0.597 3.403 5 O -0.562 6.562 6 N -0.699 5.699 7 C 0.137 3.863 8 H 0.055 0.945 9 C -0.111 4.111 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.185 3.815 13 N -0.596 5.596 14 C -0.261 4.261 15 H 0.054 0.946 16 C -0.045 4.045 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.160 3.840 23 N -0.222 5.222 24 N -0.081 5.081 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.160 4.160 28 C -0.158 4.158 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.412 0.588 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.042 0.958 40 H -0.006 1.006 41 H 0.249 0.751 42 H 0.044 0.956 43 H 0.017 0.983 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -23.693 8.417 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.268 4.268 4 C 0.382 3.618 5 O -0.440 6.440 6 N -0.350 5.350 7 C 0.030 3.970 8 H 0.073 0.927 9 C -0.149 4.149 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.060 3.940 13 N -0.318 5.318 14 C -0.391 4.391 15 H 0.071 0.929 16 C -0.240 4.240 17 N -0.580 5.580 18 Si 0.789 3.211 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.206 1.206 22 C 0.031 3.969 23 N -0.095 5.095 24 N -0.061 5.061 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.218 4.218 28 C -0.215 4.215 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.012 0.988 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.157 0.843 45 H 0.132 0.868 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.132 0.868 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.417 -23.796 8.316 26.276 hybrid contribution -1.551 0.654 -0.267 1.704 sum 5.865 -23.143 8.049 25.195 Atomic orbital electron populations 1.20800 0.82938 1.05906 1.05615 1.22264 0.97279 0.86043 0.95447 1.21194 0.89780 0.95141 1.20641 1.17033 0.85453 0.83350 0.75987 1.90798 1.17146 1.84044 1.52027 1.45802 1.10077 1.05484 1.73611 1.20772 0.97938 0.79136 0.99120 0.92654 1.20542 0.97783 0.95213 1.01312 1.20793 1.01145 0.94042 0.97390 1.21950 0.97798 1.00843 0.96433 1.20866 0.91746 0.86686 0.94723 1.43741 1.02229 1.00495 1.85343 1.19366 0.83523 1.05207 1.31043 0.92862 1.25683 1.01463 0.99493 0.97384 1.70223 1.37352 1.17301 1.33085 0.85443 0.80843 0.76884 0.77925 1.20466 1.21533 1.20638 1.20978 0.94931 0.87179 0.93762 1.74549 1.19338 1.04892 1.10695 1.81773 0.98020 1.02794 1.23499 1.50932 1.05098 1.08388 1.48732 1.22220 1.02394 0.73069 0.99218 1.22174 1.02176 1.02485 0.94917 1.22154 1.02090 1.02439 0.94849 0.87675 0.89445 0.87123 0.75186 0.90861 0.90620 0.93845 0.89860 0.90958 0.91905 0.93964 0.98828 0.94147 0.93751 0.96460 0.84312 0.86803 0.92561 0.92251 0.92328 0.86846 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.40 71.24 0.67 -1.05 16 2 C 0.13 3.05 7.02 41.72 0.29 3.35 16 3 C -0.13 -3.87 6.99 40.82 0.29 -3.59 16 4 C 0.60 21.30 7.77 86.69 0.67 21.97 16 5 O -0.56 -23.65 14.38 -4.01 -0.06 -23.71 16 6 N -0.70 -23.18 5.05 -451.46 -2.28 -25.47 16 7 C 0.14 5.19 2.34 43.79 0.10 5.29 16 8 H 0.06 2.50 7.57 -2.39 -0.02 2.49 16 9 C -0.11 -3.41 4.55 28.62 0.13 -3.28 16 10 C -0.10 -3.19 5.51 29.76 0.16 -3.02 16 11 C -0.13 -4.77 5.71 30.23 0.17 -4.59 16 12 C 0.18 9.10 4.66 86.49 0.40 9.50 16 13 N -0.60 -31.18 2.27 -698.18 -1.59 -32.77 16 14 C -0.26 -15.27 9.45 84.03 0.79 -14.47 16 15 H 0.05 3.23 7.88 -2.91 -0.02 3.21 16 16 C -0.04 -2.63 4.87 84.86 0.41 -2.21 16 17 N -0.93 -56.74 11.01 21.65 0.24 -56.50 16 18 Si 0.96 47.29 29.58 68.60 2.03 49.32 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 22 C 0.16 7.25 5.24 87.36 0.46 7.70 16 23 N -0.22 -6.58 12.04 -49.99 -0.60 -7.18 16 24 N -0.08 -2.13 13.67 37.02 0.51 -1.62 16 25 N -0.34 -6.85 3.28 -313.36 -1.03 -7.88 16 26 C 0.13 1.30 3.68 44.99 0.17 1.47 16 27 C -0.16 -1.37 9.47 71.98 0.68 -0.69 16 28 C -0.16 -1.25 9.47 71.98 0.68 -0.57 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.09 2.21 6.44 -2.39 -0.02 2.20 16 31 H 0.11 1.11 7.19 -2.39 -0.02 1.10 16 32 H 0.41 11.62 8.26 -92.71 -0.77 10.85 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.07 7.34 -2.39 -0.02 2.05 16 35 H 0.04 1.76 7.48 -2.39 -0.02 1.74 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.08 7.31 -2.39 -0.02 2.06 16 39 H 0.04 2.33 6.33 -2.39 -0.02 2.32 16 40 H -0.01 -0.35 8.03 -2.39 -0.02 -0.37 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.04 1.87 8.05 -2.39 -0.02 1.85 16 43 H 0.02 0.87 7.97 -2.39 -0.02 0.85 16 44 H 0.14 0.61 6.79 -2.39 -0.02 0.59 16 45 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.46 395.11 3.48 -72.98 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.17 Total: 17.01 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.09 Total: 15.81 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -4.75 Total: -131.41 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.06 Total: -23.71 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.46 3.48 -72.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034463442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.364 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds