Wall clock time and date at job start Tue Mar 31 2020 20:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47241 * 2 1 4 4 C 1.36597 * 126.58336 * 270.02813 * 3 2 1 5 5 C 1.47522 * 125.76531 * 0.03255 * 4 3 2 6 6 O 1.21586 * 120.00545 * 6.02468 * 5 4 3 7 7 N 1.34786 * 119.99652 * 186.02592 * 5 4 3 8 8 C 1.46921 * 120.63130 * 355.15670 * 7 5 4 9 9 C 1.53187 * 108.77793 * 126.36998 * 8 7 5 10 10 C 1.53045 * 109.31178 * 54.63596 * 9 8 7 11 11 H 1.08993 * 109.46034 * 178.61585 * 10 9 8 12 12 N 1.46498 * 109.45692 * 58.65493 * 10 9 8 13 13 C 1.36936 * 119.99818 * 85.00699 * 12 10 9 14 14 H 1.08001 * 120.00076 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00097 * 179.97438 * 13 12 10 16 16 N 1.31622 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46766 * 59.99882 * 17 15 13 19 19 H 1.48498 * 109.47476 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47150 * 300.00338 * 17 15 13 21 21 C 1.53041 * 109.53655 * 298.63754 * 10 9 8 22 22 H 1.08995 * 109.50043 * 301.41226 * 21 10 9 23 23 C 1.53002 * 109.49924 * 181.31461 * 21 10 9 24 24 C 1.46922 * 120.62935 * 175.13671 * 7 5 4 25 25 N 1.34396 * 108.46193 * 179.77188 * 4 3 2 26 26 N 1.28763 * 109.52333 * 0.22325 * 25 4 3 27 27 N 1.34818 * 126.57977 * 90.18802 * 3 2 1 28 28 C 1.46502 * 126.59192 * 0.02562 * 27 3 2 29 29 C 1.53002 * 109.47164 * 270.27041 * 28 27 3 30 30 H 1.09003 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47325 * 300.00106 * 1 2 3 32 32 H 1.09000 * 109.46910 * 60.00039 * 1 2 3 33 33 H 1.09004 * 109.46859 * 239.99944 * 2 1 3 34 34 H 1.08992 * 109.46807 * 120.00579 * 2 1 3 35 35 H 1.09007 * 109.58796 * 6.58090 * 8 7 5 36 36 H 1.09005 * 109.59134 * 246.15995 * 8 7 5 37 37 H 1.08998 * 109.50160 * 174.58626 * 9 8 7 38 38 H 1.09001 * 109.50013 * 294.68860 * 9 8 7 39 39 H 0.97000 * 120.00070 * 264.99590 * 12 10 9 40 40 H 0.97003 * 119.99710 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46800 * 59.99767 * 23 21 10 42 42 H 1.08991 * 109.47180 * 179.97438 * 23 21 10 43 43 H 1.09000 * 109.47091 * 300.00171 * 23 21 10 44 44 H 1.09002 * 109.58505 * 113.84455 * 24 7 5 45 45 H 1.08999 * 109.70645 * 353.49002 * 24 7 5 46 46 H 1.08991 * 109.47240 * 30.26836 * 28 27 3 47 47 H 1.08999 * 109.47049 * 150.27207 * 28 27 3 48 48 H 1.09004 * 109.46908 * 300.00245 * 29 28 27 49 49 H 1.08993 * 109.47292 * 59.99869 * 29 28 27 50 50 H 1.08996 * 109.47440 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7672 -2.5026 6 8 1.6539 0.6898 -2.7644 7 7 2.5686 2.5767 -3.4969 8 6 3.0757 3.9239 -3.2027 9 6 4.4596 4.0801 -3.8407 10 6 4.3685 3.7549 -5.3334 11 1 5.3468 3.8891 -5.7946 12 7 3.4016 4.6525 -5.9702 13 6 3.7968 5.8918 -6.3984 14 1 4.8211 6.2075 -6.2662 15 6 2.8808 6.7422 -7.0023 16 7 1.6326 6.3571 -7.1639 17 14 3.4196 8.4329 -7.5858 18 1 4.4959 8.2872 -8.5986 19 1 2.2626 9.1394 -8.1918 20 1 3.9290 9.2158 -6.4314 21 6 3.9139 2.3048 -5.5144 22 1 4.6197 1.6378 -5.0195 23 6 3.8547 1.9706 -7.0063 24 6 2.5238 2.1285 -4.8953 25 7 2.7245 3.3943 -0.6788 26 7 2.7370 3.4233 0.6084 27 7 2.3036 2.1770 1.0826 28 6 2.1670 1.7755 2.4849 29 6 0.7571 2.1099 2.9762 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1535 4.0576 -2.1237 36 1 2.3961 4.6687 -3.6171 37 1 4.8058 5.1057 -3.7123 38 1 5.1604 3.3964 -3.3615 39 1 2.4816 4.3690 -6.0888 40 1 0.9926 6.9512 -7.5863 41 1 4.8434 2.0990 -7.4469 42 1 3.5314 0.9377 -7.1347 43 1 3.1476 2.6371 -7.5001 44 1 1.7993 2.7269 -5.4478 45 1 2.2364 1.0779 -4.9355 46 1 2.3378 0.7027 2.5739 47 1 2.8990 2.3113 3.0892 48 1 0.5863 3.1828 2.8872 49 1 0.0252 1.5741 2.3719 50 1 0.6557 1.8115 4.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036197224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:23 Heat of formation + Delta-G solvation = 77.169370 kcal Electronic energy + Delta-G solvation = -30607.972079 eV Core-core repulsion = 26672.990505 eV Total energy + Delta-G solvation = -3934.981573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42330 -39.63872 -37.55428 -36.10358 -34.19586 -33.90784 -32.74512 -31.27020 -30.82927 -29.94600 -29.02240 -26.41319 -25.10700 -24.78303 -24.11833 -23.43586 -22.64513 -21.52274 -20.62509 -19.75534 -18.33006 -17.31829 -17.22478 -16.38491 -15.98324 -15.80030 -15.05476 -14.94075 -14.76124 -14.42445 -14.26015 -14.14682 -13.88619 -13.49566 -13.35209 -13.15335 -13.02621 -12.76959 -12.68008 -12.51925 -12.39425 -12.36696 -11.90880 -11.61034 -11.52392 -11.33018 -11.19483 -11.13160 -10.88642 -10.76975 -10.64136 -10.40252 -10.35735 -10.14427 -9.96856 -9.72610 -9.48968 -9.37717 -9.18102 -8.77927 -8.05421 -6.86594 -5.69832 -2.97328 1.04811 1.75988 1.86805 3.32001 3.47871 3.48619 3.53453 3.53889 4.01692 4.05736 4.38698 4.40600 4.55765 4.65299 4.65787 4.82926 4.98492 5.01297 5.13271 5.18944 5.31095 5.43337 5.44358 5.50219 5.52699 5.57797 5.60253 5.75701 5.79163 5.87430 5.97502 6.02212 6.06096 6.13624 6.20669 6.28571 6.29239 6.38085 6.55035 6.61993 6.70155 6.82314 6.90760 6.94570 7.08882 7.19281 7.76888 7.78193 8.00066 8.45026 8.49035 9.60302 10.18336 10.53559 11.52780 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003181 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.996885 B = 8800.320209 C = 9682.082301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C 0.121 3.879 4 C -0.090 4.090 5 C 0.597 3.403 6 O -0.552 6.552 7 N -0.581 5.581 8 C 0.075 3.925 9 C -0.145 4.145 10 C 0.177 3.823 11 H 0.048 0.952 12 N -0.718 5.718 13 C -0.234 4.234 14 H 0.068 0.932 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.287 1.287 21 C -0.108 4.108 22 H 0.064 0.936 23 C -0.136 4.136 24 C 0.120 3.880 25 N -0.196 5.196 26 N -0.072 5.072 27 N -0.360 5.360 28 C 0.117 3.883 29 C -0.174 4.174 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -15.159 19.912 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.016 4.016 4 C -0.229 4.229 5 C 0.383 3.617 6 O -0.431 6.431 7 N -0.310 5.310 8 C -0.048 4.048 9 C -0.186 4.186 10 C 0.067 3.933 11 H 0.066 0.934 12 N -0.360 5.360 13 C -0.365 4.365 14 H 0.086 0.914 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.735 3.265 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.214 1.214 21 C -0.128 4.128 22 H 0.083 0.917 23 C -0.194 4.194 24 C -0.003 4.003 25 N -0.067 5.067 26 N -0.050 5.050 27 N -0.146 5.146 28 C -0.004 4.004 29 C -0.232 4.232 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.289 -14.129 20.159 24.619 hybrid contribution -0.235 0.283 -0.472 0.599 sum 0.054 -13.846 19.686 24.068 Atomic orbital electron populations 1.21727 0.93092 1.02745 1.02540 1.20416 0.97348 0.87270 1.04960 1.21876 0.97123 0.96332 0.86305 1.21287 1.14095 0.91955 0.95572 1.16770 0.78581 0.83846 0.82463 1.90709 1.46309 1.22728 1.83368 1.47937 1.60861 1.16061 1.06167 1.22805 0.95929 0.81466 1.04580 1.22463 0.95758 1.01397 0.98984 1.20243 0.93937 0.88096 0.91017 0.93388 1.42451 1.08957 1.14500 1.70114 1.19179 0.94842 0.91509 1.30969 0.91368 1.24687 0.95696 0.98489 1.02019 1.69644 1.02451 1.36679 1.49451 0.86315 0.77037 0.84643 0.78465 1.21466 1.21877 1.21381 1.21697 0.96328 0.98335 0.96396 0.91742 1.21664 1.02515 1.00228 0.95033 1.21682 0.97801 1.00761 0.80024 1.74258 1.11476 1.17771 1.03233 1.82032 1.19978 0.98871 1.04117 1.50464 1.45607 1.11192 1.07344 1.21962 1.00172 1.01914 0.76389 1.22264 0.94919 1.03710 1.02318 0.91225 0.93081 0.91212 0.86725 0.90632 0.85298 0.90304 0.90969 0.93798 0.78130 0.93588 0.92868 0.93828 0.91024 0.90551 0.89806 0.88166 0.87589 0.91141 0.91368 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.90 37.16 0.37 -0.84 16 2 C -0.06 -0.55 5.56 -27.88 -0.16 -0.70 16 3 C 0.12 1.46 6.27 -81.88 -0.51 0.94 16 4 C -0.09 -1.40 6.77 -83.55 -0.57 -1.97 16 5 C 0.60 10.36 7.69 -12.47 -0.10 10.26 16 6 O -0.55 -9.85 14.24 5.29 0.08 -9.78 16 7 N -0.58 -10.49 2.97 -174.01 -0.52 -11.01 16 8 C 0.08 1.42 6.06 -3.72 -0.02 1.40 16 9 C -0.14 -2.72 5.78 -26.61 -0.15 -2.88 16 10 C 0.18 3.54 2.53 -67.89 -0.17 3.37 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 N -0.72 -17.36 3.64 -53.39 -0.19 -17.56 16 13 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 17 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C -0.11 -1.86 2.67 -90.50 -0.24 -2.11 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 C -0.14 -2.27 9.05 37.16 0.34 -1.94 16 24 C 0.12 2.14 5.40 -3.71 -0.02 2.12 16 25 N -0.20 -3.19 8.64 32.85 0.28 -2.91 16 26 N -0.07 -1.04 13.78 60.35 0.83 -0.21 16 27 N -0.36 -3.88 3.63 -56.85 -0.21 -4.09 16 28 C 0.12 0.67 7.02 -4.04 -0.03 0.65 16 29 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.36 6.12 -51.93 -0.32 0.04 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.23 6.58 -51.93 -0.34 0.89 16 34 H 0.08 0.44 7.18 -51.93 -0.37 0.07 16 35 H 0.13 2.37 3.60 -131.28 -0.47 1.89 16 36 H 0.08 1.73 7.74 -51.93 -0.40 1.33 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.38 9.90 5.93 -40.82 -0.24 9.66 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 44 H 0.08 1.51 6.64 -51.93 -0.34 1.17 16 45 H 0.08 1.44 7.04 -51.93 -0.37 1.07 16 46 H 0.10 0.33 7.16 -51.93 -0.37 -0.04 16 47 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.37 6.12 -51.93 -0.32 0.05 16 50 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -32.34 388.47 -7.43 -39.78 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.13 Total: 8.81 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.13 Total: 0.86 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.92 Total: -63.00 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.34 -7.43 -39.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036197224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.948 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds