Wall clock time and date at job start Tue Mar 31 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47241 * 2 1 4 4 C 1.36597 * 126.58336 * 270.02813 * 3 2 1 5 5 C 1.47522 * 125.76531 * 0.03255 * 4 3 2 6 6 O 1.21586 * 120.00545 * 6.02468 * 5 4 3 7 7 N 1.34786 * 119.99652 * 186.02592 * 5 4 3 8 8 C 1.46921 * 120.63130 * 355.15670 * 7 5 4 9 9 C 1.53187 * 108.77793 * 126.36998 * 8 7 5 10 10 C 1.53045 * 109.31178 * 54.63596 * 9 8 7 11 11 H 1.08993 * 109.46034 * 178.61585 * 10 9 8 12 12 N 1.46498 * 109.45692 * 58.65493 * 10 9 8 13 13 C 1.36936 * 119.99818 * 85.00699 * 12 10 9 14 14 H 1.08001 * 120.00076 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00097 * 179.97438 * 13 12 10 16 16 N 1.31622 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46766 * 59.99882 * 17 15 13 19 19 H 1.48498 * 109.47476 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47150 * 300.00338 * 17 15 13 21 21 C 1.53041 * 109.53655 * 298.63754 * 10 9 8 22 22 H 1.08995 * 109.50043 * 301.41226 * 21 10 9 23 23 C 1.53002 * 109.49924 * 181.31461 * 21 10 9 24 24 C 1.46922 * 120.62935 * 175.13671 * 7 5 4 25 25 N 1.34396 * 108.46193 * 179.77188 * 4 3 2 26 26 N 1.28763 * 109.52333 * 0.22325 * 25 4 3 27 27 N 1.34818 * 126.57977 * 90.18802 * 3 2 1 28 28 C 1.46502 * 126.59192 * 0.02562 * 27 3 2 29 29 C 1.53002 * 109.47164 * 270.27041 * 28 27 3 30 30 H 1.09003 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47325 * 300.00106 * 1 2 3 32 32 H 1.09000 * 109.46910 * 60.00039 * 1 2 3 33 33 H 1.09004 * 109.46859 * 239.99944 * 2 1 3 34 34 H 1.08992 * 109.46807 * 120.00579 * 2 1 3 35 35 H 1.09007 * 109.58796 * 6.58090 * 8 7 5 36 36 H 1.09005 * 109.59134 * 246.15995 * 8 7 5 37 37 H 1.08998 * 109.50160 * 174.58626 * 9 8 7 38 38 H 1.09001 * 109.50013 * 294.68860 * 9 8 7 39 39 H 0.97000 * 120.00070 * 264.99590 * 12 10 9 40 40 H 0.97003 * 119.99710 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46800 * 59.99767 * 23 21 10 42 42 H 1.08991 * 109.47180 * 179.97438 * 23 21 10 43 43 H 1.09000 * 109.47091 * 300.00171 * 23 21 10 44 44 H 1.09002 * 109.58505 * 113.84455 * 24 7 5 45 45 H 1.08999 * 109.70645 * 353.49002 * 24 7 5 46 46 H 1.08991 * 109.47240 * 30.26836 * 28 27 3 47 47 H 1.08999 * 109.47049 * 150.27207 * 28 27 3 48 48 H 1.09004 * 109.46908 * 300.00245 * 29 28 27 49 49 H 1.08993 * 109.47292 * 59.99869 * 29 28 27 50 50 H 1.08996 * 109.47440 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7672 -2.5026 6 8 1.6539 0.6898 -2.7644 7 7 2.5686 2.5767 -3.4969 8 6 3.0757 3.9239 -3.2027 9 6 4.4596 4.0801 -3.8407 10 6 4.3685 3.7549 -5.3334 11 1 5.3468 3.8891 -5.7946 12 7 3.4016 4.6525 -5.9702 13 6 3.7968 5.8918 -6.3984 14 1 4.8211 6.2075 -6.2662 15 6 2.8808 6.7422 -7.0023 16 7 1.6326 6.3571 -7.1639 17 14 3.4196 8.4329 -7.5858 18 1 4.4959 8.2872 -8.5986 19 1 2.2626 9.1394 -8.1918 20 1 3.9290 9.2158 -6.4314 21 6 3.9139 2.3048 -5.5144 22 1 4.6197 1.6378 -5.0195 23 6 3.8547 1.9706 -7.0063 24 6 2.5238 2.1285 -4.8953 25 7 2.7245 3.3943 -0.6788 26 7 2.7370 3.4233 0.6084 27 7 2.3036 2.1770 1.0826 28 6 2.1670 1.7755 2.4849 29 6 0.7571 2.1099 2.9762 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1535 4.0576 -2.1237 36 1 2.3961 4.6687 -3.6171 37 1 4.8058 5.1057 -3.7123 38 1 5.1604 3.3964 -3.3615 39 1 2.4816 4.3690 -6.0888 40 1 0.9926 6.9512 -7.5863 41 1 4.8434 2.0990 -7.4469 42 1 3.5314 0.9377 -7.1347 43 1 3.1476 2.6371 -7.5001 44 1 1.7993 2.7269 -5.4478 45 1 2.2364 1.0779 -4.9355 46 1 2.3378 0.7027 2.5739 47 1 2.8990 2.3113 3.0892 48 1 0.5863 3.1828 2.8872 49 1 0.0252 1.5741 2.3719 50 1 0.6557 1.8115 4.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036197224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:21 Heat of formation + Delta-G solvation = 56.612367 kcal Electronic energy + Delta-G solvation = -30608.863497 eV Core-core repulsion = 26672.990505 eV Total energy + Delta-G solvation = -3935.872992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.44970 -41.06055 -39.04123 -36.94481 -35.77485 -34.75852 -34.42312 -32.97224 -31.56492 -31.02561 -30.82462 -27.73197 -26.69010 -25.56890 -25.39413 -24.85144 -23.81997 -23.02487 -21.53605 -20.93292 -19.82517 -19.24977 -18.44654 -17.40004 -17.20135 -16.95914 -16.60209 -15.99913 -15.90066 -15.84668 -15.66340 -15.41868 -14.98921 -14.86466 -14.68366 -14.36482 -14.21012 -13.94455 -13.87562 -13.57745 -13.37064 -13.23535 -13.04779 -12.99052 -12.82050 -12.69846 -12.52640 -12.37160 -12.30858 -12.15658 -12.12230 -11.92779 -11.85308 -11.57177 -11.38890 -11.21490 -11.15092 -10.98151 -10.59563 -10.26330 -9.53816 -8.90295 -7.87387 -5.13481 0.09935 0.55790 1.07995 1.48564 1.50933 1.56487 1.98668 2.18455 2.60544 3.07883 3.30331 3.46058 3.51971 3.65083 3.83864 3.90815 3.96380 4.07992 4.13523 4.15779 4.20689 4.26049 4.33374 4.44168 4.45789 4.50413 4.55630 4.64147 4.69862 4.74635 4.80881 4.87545 4.92136 4.97735 5.06534 5.08639 5.14513 5.20195 5.22842 5.27444 5.30859 5.39635 5.48547 5.50274 5.54165 5.60679 5.73566 6.34337 6.40030 6.84187 7.11909 7.41323 8.18206 8.42303 9.35943 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003181 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.996885 B = 8800.320209 C = 9682.082301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C 0.138 3.862 4 C -0.124 4.124 5 C 0.597 3.403 6 O -0.560 6.560 7 N -0.588 5.588 8 C 0.087 3.913 9 C -0.136 4.136 10 C 0.172 3.828 11 H 0.047 0.953 12 N -0.724 5.724 13 C -0.228 4.228 14 H 0.073 0.927 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.966 3.034 18 H -0.279 1.279 19 H -0.300 1.300 20 H -0.282 1.282 21 C -0.097 4.097 22 H 0.087 0.913 23 C -0.129 4.129 24 C 0.125 3.875 25 N -0.226 5.226 26 N -0.091 5.091 27 N -0.343 5.343 28 C 0.102 3.898 29 C -0.170 4.170 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.138 0.862 47 H 0.119 0.881 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -17.397 22.592 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.001 4.001 4 C -0.263 4.263 5 C 0.384 3.616 6 O -0.439 6.439 7 N -0.318 5.318 8 C -0.037 4.037 9 C -0.177 4.177 10 C 0.063 3.937 11 H 0.065 0.935 12 N -0.364 5.364 13 C -0.360 4.360 14 H 0.091 0.909 15 C -0.267 4.267 16 N -0.621 5.621 17 Si 0.796 3.204 18 H -0.206 1.206 19 H -0.227 1.227 20 H -0.208 1.208 21 C -0.117 4.117 22 H 0.105 0.895 23 C -0.187 4.187 24 C 0.002 3.998 25 N -0.097 5.097 26 N -0.069 5.069 27 N -0.129 5.129 28 C -0.016 4.016 29 C -0.228 4.228 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.156 0.844 47 H 0.137 0.863 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.404 -16.383 22.890 28.184 hybrid contribution -0.587 0.851 -1.118 1.523 sum 0.817 -15.532 21.772 26.757 Atomic orbital electron populations 1.21715 0.92572 1.03885 1.01611 1.20571 0.97572 0.85261 1.06347 1.22282 0.95117 0.97161 0.85542 1.21239 1.16732 0.92897 0.95478 1.17025 0.77808 0.83572 0.83151 1.90690 1.46451 1.22978 1.83800 1.47930 1.61539 1.15849 1.06433 1.22607 0.94889 0.81132 1.05057 1.22338 0.96132 1.01117 0.98121 1.20454 0.92865 0.89087 0.91245 0.93474 1.42562 1.09212 1.14373 1.70303 1.19545 0.94853 0.92396 1.29218 0.90864 1.25418 0.95878 1.02015 1.03404 1.69812 1.03479 1.37665 1.51163 0.85316 0.76375 0.80650 0.78053 1.20579 1.22665 1.20811 1.21622 0.96254 0.96700 0.97122 0.89483 1.21590 1.02050 1.01020 0.94072 1.21575 0.97535 1.00641 0.80016 1.74069 1.12716 1.18619 1.04320 1.81912 1.20807 1.00842 1.03347 1.50820 1.43494 1.09663 1.08911 1.22583 1.01120 1.04354 0.73572 1.22268 0.94129 1.02265 1.04161 0.89058 0.91457 0.94717 0.88343 0.86179 0.84194 0.94387 0.92338 0.91510 0.79351 0.94393 0.92170 0.91192 0.94235 0.93352 0.88760 0.84449 0.86258 0.93352 0.91631 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.90 71.98 0.71 -1.31 16 2 C -0.06 -0.88 5.56 29.85 0.17 -0.71 16 3 C 0.14 3.07 6.27 41.71 0.26 3.33 16 4 C -0.12 -3.83 6.77 40.82 0.28 -3.55 16 5 C 0.60 20.86 7.69 86.69 0.67 21.53 16 6 O -0.56 -19.89 14.24 -3.99 -0.06 -19.94 16 7 N -0.59 -21.73 2.97 -822.69 -2.45 -24.18 16 8 C 0.09 3.40 6.06 86.36 0.52 3.92 16 9 C -0.14 -5.16 5.78 30.67 0.18 -4.98 16 10 C 0.17 6.93 2.53 45.02 0.11 7.05 16 11 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 12 N -0.72 -36.21 3.64 -322.82 -1.18 -37.38 16 13 C -0.23 -12.66 9.93 84.03 0.83 -11.82 16 14 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 15 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 17 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 C -0.10 -3.32 2.67 -10.72 -0.03 -3.35 16 22 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 23 C -0.13 -4.24 9.05 71.98 0.65 -3.59 16 24 C 0.12 4.55 5.40 86.36 0.47 5.01 16 25 N -0.23 -7.43 8.64 -50.00 -0.43 -7.87 16 26 N -0.09 -2.56 13.78 37.02 0.51 -2.05 16 27 N -0.34 -6.63 3.63 -333.78 -1.21 -7.84 16 28 C 0.10 0.79 7.02 86.38 0.61 1.40 16 29 C -0.17 -1.14 10.24 71.98 0.74 -0.40 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.74 6.12 -2.39 -0.01 0.73 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.90 6.58 -2.39 -0.02 1.89 16 34 H 0.12 0.76 7.18 -2.39 -0.02 0.74 16 35 H 0.14 5.32 3.60 -105.06 -0.38 4.94 16 36 H 0.04 1.78 7.74 -2.38 -0.02 1.76 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.37 20.29 5.93 -92.71 -0.55 19.74 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.55 7.54 -2.39 -0.02 1.53 16 44 H 0.05 2.03 6.64 -2.39 -0.02 2.01 16 45 H 0.09 3.22 7.04 -2.39 -0.02 3.20 16 46 H 0.14 0.12 7.16 -2.39 -0.02 0.10 16 47 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.06 0.49 6.12 -2.39 -0.01 0.48 16 50 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -73.84 388.47 4.17 -69.67 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.04 Total: 31.72 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.63 Total: 8.62 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -4.47 Total: -139.37 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.06 Total: -19.94 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -73.84 4.17 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036197224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.283 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds