Wall clock time and date at job start Tue Mar 31 2020 20:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47105 * 2 1 4 4 C 1.36604 * 126.58100 * 270.00076 * 3 2 1 5 5 C 1.47518 * 125.76628 * 359.97438 * 4 3 2 6 6 O 1.21597 * 120.00400 * 353.97760 * 5 4 3 7 7 N 1.34779 * 119.99728 * 173.97339 * 5 4 3 8 8 C 1.46926 * 120.63093 * 184.71298 * 7 5 4 9 9 C 1.53193 * 108.77880 * 126.36904 * 8 7 5 10 10 C 1.53048 * 109.31219 * 54.63368 * 9 8 7 11 11 H 1.08997 * 109.45677 * 58.64030 * 10 9 8 12 12 N 1.46491 * 109.45888 * 178.61773 * 10 9 8 13 13 C 1.36942 * 120.00142 * 274.99558 * 12 10 9 14 14 H 1.08009 * 119.99471 * 0.02562 * 13 12 10 15 15 C 1.38808 * 120.00438 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47041 * 89.99499 * 17 15 13 19 19 H 1.48497 * 109.47078 * 209.99799 * 17 15 13 20 20 H 1.48499 * 109.46826 * 330.00112 * 17 15 13 21 21 C 1.53042 * 109.53531 * 298.63652 * 10 9 8 22 22 H 1.08997 * 109.50079 * 301.41579 * 21 10 9 23 23 C 1.53005 * 109.49530 * 181.31484 * 21 10 9 24 24 C 1.46930 * 120.62914 * 4.43060 * 7 5 4 25 25 N 1.34405 * 108.45785 * 180.02562 * 4 3 2 26 26 N 1.28761 * 109.52480 * 359.97438 * 25 4 3 27 27 N 1.34816 * 126.58232 * 89.99885 * 3 2 1 28 28 C 1.46501 * 126.59440 * 0.02562 * 27 3 2 29 29 C 1.52994 * 109.47164 * 270.00157 * 28 27 3 30 30 H 1.08997 * 109.47237 * 59.99760 * 1 2 3 31 31 H 1.09001 * 109.46650 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46569 * 299.99957 * 1 2 3 33 33 H 1.08994 * 109.47405 * 240.00107 * 2 1 3 34 34 H 1.09005 * 109.47095 * 119.99935 * 2 1 3 35 35 H 1.09008 * 109.58653 * 246.15842 * 8 7 5 36 36 H 1.09000 * 109.58957 * 6.43556 * 8 7 5 37 37 H 1.08996 * 109.50066 * 174.58585 * 9 8 7 38 38 H 1.09003 * 109.49477 * 294.65319 * 9 8 7 39 39 H 0.97003 * 120.00478 * 95.00405 * 12 10 9 40 40 H 0.96993 * 120.00527 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46861 * 60.00102 * 23 21 10 42 42 H 1.09003 * 109.46679 * 179.97438 * 23 21 10 43 43 H 1.09002 * 109.47028 * 300.00045 * 23 21 10 44 44 H 1.08992 * 109.58481 * 353.41962 * 24 7 5 45 45 H 1.08998 * 109.58433 * 113.84573 * 24 7 5 46 46 H 1.09003 * 109.47070 * 29.99754 * 28 27 3 47 47 H 1.08998 * 109.47242 * 149.99635 * 28 27 3 48 48 H 1.09000 * 109.46997 * 179.97438 * 29 28 27 49 49 H 1.09003 * 109.46798 * 299.99763 * 29 28 27 50 50 H 1.08998 * 109.47468 * 59.99616 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3037 2.1883 -1.0969 5 6 2.1551 1.7664 -2.5027 6 8 1.8656 0.6148 -2.7645 7 7 2.3401 2.6575 -3.4968 8 6 2.0955 2.2800 -4.8955 9 6 1.1239 3.2889 -5.5160 10 6 1.6790 4.7036 -5.3346 11 1 2.6588 4.7725 -5.8071 12 7 0.7685 5.6684 -5.9558 13 6 0.8695 5.9418 -7.2938 14 1 1.6203 5.4457 -7.8912 15 6 0.0071 6.8565 -7.8824 16 7 -0.9074 7.4615 -7.1544 17 14 0.1445 7.2289 -9.7078 18 1 -0.7234 6.2956 -10.4701 19 1 -0.2883 8.6265 -9.9618 20 1 1.5544 7.0604 -10.1426 21 6 1.8102 5.0143 -3.8418 22 1 0.8350 4.9212 -3.3637 23 6 2.3342 6.4404 -3.6612 24 6 2.7842 4.0266 -3.2019 25 7 2.7300 3.3925 -0.6789 26 7 2.7404 3.4222 0.6084 27 7 2.3002 2.1783 1.0826 28 6 2.1593 1.7784 2.4849 29 6 0.7501 2.1195 2.9734 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0358 2.2915 -5.4469 36 1 1.6618 1.2807 -4.9339 37 1 1.0088 3.0768 -6.5789 38 1 0.1551 3.2117 -5.0225 39 1 0.0941 6.1138 -5.4194 40 1 -1.5103 8.1003 -7.5657 41 1 1.6385 7.1438 -4.1188 42 1 2.4270 6.6614 -2.5978 43 1 3.3099 6.5321 -4.1383 44 1 2.8023 4.1804 -2.1230 45 1 3.7817 4.1836 -3.6123 46 1 2.3251 0.7048 2.5749 47 1 2.8926 2.3113 3.0901 48 1 0.6452 1.8215 4.0166 49 1 0.5843 3.1930 2.8833 50 1 0.0168 1.5866 2.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036197231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:36 Heat of formation + Delta-G solvation = 73.960378 kcal Electronic energy + Delta-G solvation = -30296.433354 eV Core-core repulsion = 26361.312629 eV Total energy + Delta-G solvation = -3935.120726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54134 -39.72364 -37.58825 -36.17420 -34.48831 -34.04422 -32.50058 -31.83869 -30.84870 -30.12022 -29.05648 -26.19184 -25.32763 -24.91747 -24.25699 -23.47522 -22.13638 -21.62274 -20.49684 -19.97235 -19.10745 -17.66183 -16.98659 -16.55983 -16.00369 -15.97312 -15.14077 -15.04971 -14.82922 -14.80150 -14.24946 -13.97485 -13.85034 -13.62966 -13.47833 -13.26482 -12.97793 -12.82885 -12.70973 -12.63065 -12.55628 -12.29259 -11.99091 -11.75915 -11.63731 -11.42102 -11.27449 -11.14144 -10.87582 -10.83378 -10.53775 -10.45764 -10.42843 -10.25801 -10.13381 -9.88813 -9.64224 -9.30370 -9.25836 -8.82188 -8.32338 -6.88326 -5.71243 -2.99103 0.94366 1.61873 1.76669 3.12736 3.34098 3.46749 3.52105 3.53479 3.91186 3.97514 4.28151 4.32979 4.44478 4.57810 4.63888 4.73628 4.90408 4.96186 5.03870 5.10984 5.22272 5.36093 5.40159 5.44843 5.49331 5.52383 5.54575 5.60469 5.68925 5.79828 5.84762 5.92730 5.93750 5.96476 6.18924 6.21347 6.28326 6.43337 6.45344 6.58874 6.60485 6.66027 6.81051 6.96986 7.06214 7.18226 7.57628 7.75112 7.84434 8.27878 8.47437 9.58581 10.17432 10.52482 11.51487 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002750 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.634226 B =10180.405627 C =10665.169888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C 0.125 3.875 4 C -0.094 4.094 5 C 0.601 3.399 6 O -0.547 6.547 7 N -0.586 5.586 8 C 0.113 3.887 9 C -0.150 4.150 10 C 0.182 3.818 11 H 0.047 0.953 12 N -0.721 5.721 13 C -0.234 4.234 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.106 4.106 22 H 0.065 0.935 23 C -0.134 4.134 24 C 0.075 3.925 25 N -0.200 5.200 26 N -0.069 5.069 27 N -0.358 5.358 28 C 0.116 3.884 29 C -0.175 4.175 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.140 0.860 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -15.435 22.460 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.013 4.013 4 C -0.233 4.233 5 C 0.387 3.613 6 O -0.426 6.426 7 N -0.317 5.317 8 C -0.010 4.010 9 C -0.191 4.191 10 C 0.072 3.928 11 H 0.065 0.935 12 N -0.361 5.361 13 C -0.365 4.365 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.126 4.126 22 H 0.083 0.917 23 C -0.192 4.192 24 C -0.049 4.049 25 N -0.071 5.071 26 N -0.047 5.047 27 N -0.145 5.145 28 C -0.005 4.005 29 C -0.232 4.232 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.156 0.844 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.852 -14.582 22.577 27.736 hybrid contribution -0.572 -0.340 -1.060 1.252 sum 6.280 -14.923 21.517 26.927 Atomic orbital electron populations 1.21743 0.93077 1.02884 1.02528 1.20501 0.97310 0.87286 1.05381 1.21905 0.96903 0.96217 0.86257 1.21250 1.14600 0.91918 0.95514 1.16763 0.77208 0.84868 0.82438 1.90716 1.50627 1.17938 1.83292 1.47956 1.64720 1.12433 1.06544 1.21762 0.99746 0.99798 0.79656 1.22666 0.98372 0.97123 1.00906 1.20240 0.93880 0.88234 0.90450 0.93495 1.42415 1.38730 1.47682 1.07266 1.19234 1.13221 1.18726 0.85337 0.91271 1.24715 0.98649 0.99888 0.97784 1.69658 1.22269 1.31665 1.34622 0.86228 0.77396 0.77243 0.85566 1.21859 1.21892 1.20826 1.21600 0.98743 0.95002 0.97244 0.91667 1.21634 1.01541 0.95990 1.00022 1.22889 0.97063 0.79177 1.05796 1.74143 1.12082 1.17458 1.03449 1.82020 1.19602 0.99177 1.03921 1.50468 1.45341 1.11198 1.07445 1.21989 1.00260 1.01981 0.76242 1.22267 0.94823 1.03744 1.02415 0.91452 0.91066 0.92935 0.86291 0.90457 0.91689 0.89643 0.90661 0.92360 0.78279 0.93619 0.90983 0.93728 0.93153 0.84381 0.91891 0.88092 0.87523 0.89722 0.91079 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.90 37.16 0.37 -0.76 16 2 C -0.07 -0.54 5.69 -27.88 -0.16 -0.70 16 3 C 0.12 1.37 6.27 -81.87 -0.51 0.86 16 4 C -0.09 -1.32 6.77 -83.55 -0.57 -1.89 16 5 C 0.60 9.49 7.69 -12.48 -0.10 9.40 16 6 O -0.55 -9.11 14.13 5.28 0.07 -9.04 16 7 N -0.59 -9.37 2.98 -174.26 -0.52 -9.89 16 8 C 0.11 1.80 6.42 -3.71 -0.02 1.78 16 9 C -0.15 -2.78 5.66 -26.61 -0.15 -2.93 16 10 C 0.18 3.67 2.20 -67.89 -0.15 3.53 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 N -0.72 -17.99 4.41 -53.38 -0.24 -18.23 16 13 C -0.23 -6.46 9.93 -15.06 -0.15 -6.61 16 14 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 17 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.11 -1.87 2.44 -90.72 -0.22 -2.09 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.13 -2.32 9.03 37.16 0.34 -1.99 16 24 C 0.07 1.17 5.57 -3.93 -0.02 1.15 16 25 N -0.20 -2.90 8.63 32.85 0.28 -2.61 16 26 N -0.07 -0.90 13.78 60.35 0.83 -0.07 16 27 N -0.36 -3.49 3.63 -56.85 -0.21 -3.69 16 28 C 0.12 0.58 7.02 -4.04 -0.03 0.55 16 29 C -0.17 -0.76 10.24 37.15 0.38 -0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.34 6.13 -51.93 -0.32 0.02 16 33 H 0.12 1.19 6.32 -51.93 -0.33 0.87 16 34 H 0.08 0.40 7.18 -51.93 -0.37 0.02 16 35 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.09 1.35 7.03 -51.93 -0.37 0.99 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.38 10.29 7.51 -40.82 -0.31 9.98 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.44 7.36 -51.93 -0.38 1.06 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.14 2.15 3.60 -131.28 -0.47 1.68 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.10 0.26 7.16 -51.93 -0.37 -0.12 16 47 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.34 6.13 -51.93 -0.32 0.02 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -33.01 392.16 -7.53 -40.54 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.27 Total: 7.73 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.09 Total: -0.61 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.88 Total: -62.08 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.01 -7.53 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036197231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.496 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds