Wall clock time and date at job start Tue Mar 31 2020 20:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47105 * 2 1 4 4 C 1.36604 * 126.58100 * 270.00076 * 3 2 1 5 5 C 1.47518 * 125.76628 * 359.97438 * 4 3 2 6 6 O 1.21597 * 120.00400 * 353.97760 * 5 4 3 7 7 N 1.34779 * 119.99728 * 173.97339 * 5 4 3 8 8 C 1.46926 * 120.63093 * 184.71298 * 7 5 4 9 9 C 1.53193 * 108.77880 * 126.36904 * 8 7 5 10 10 C 1.53048 * 109.31219 * 54.63368 * 9 8 7 11 11 H 1.08997 * 109.45677 * 58.64030 * 10 9 8 12 12 N 1.46491 * 109.45888 * 178.61773 * 10 9 8 13 13 C 1.36942 * 120.00142 * 274.99558 * 12 10 9 14 14 H 1.08009 * 119.99471 * 0.02562 * 13 12 10 15 15 C 1.38808 * 120.00438 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47041 * 89.99499 * 17 15 13 19 19 H 1.48497 * 109.47078 * 209.99799 * 17 15 13 20 20 H 1.48499 * 109.46826 * 330.00112 * 17 15 13 21 21 C 1.53042 * 109.53531 * 298.63652 * 10 9 8 22 22 H 1.08997 * 109.50079 * 301.41579 * 21 10 9 23 23 C 1.53005 * 109.49530 * 181.31484 * 21 10 9 24 24 C 1.46930 * 120.62914 * 4.43060 * 7 5 4 25 25 N 1.34405 * 108.45785 * 180.02562 * 4 3 2 26 26 N 1.28761 * 109.52480 * 359.97438 * 25 4 3 27 27 N 1.34816 * 126.58232 * 89.99885 * 3 2 1 28 28 C 1.46501 * 126.59440 * 0.02562 * 27 3 2 29 29 C 1.52994 * 109.47164 * 270.00157 * 28 27 3 30 30 H 1.08997 * 109.47237 * 59.99760 * 1 2 3 31 31 H 1.09001 * 109.46650 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46569 * 299.99957 * 1 2 3 33 33 H 1.08994 * 109.47405 * 240.00107 * 2 1 3 34 34 H 1.09005 * 109.47095 * 119.99935 * 2 1 3 35 35 H 1.09008 * 109.58653 * 246.15842 * 8 7 5 36 36 H 1.09000 * 109.58957 * 6.43556 * 8 7 5 37 37 H 1.08996 * 109.50066 * 174.58585 * 9 8 7 38 38 H 1.09003 * 109.49477 * 294.65319 * 9 8 7 39 39 H 0.97003 * 120.00478 * 95.00405 * 12 10 9 40 40 H 0.96993 * 120.00527 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46861 * 60.00102 * 23 21 10 42 42 H 1.09003 * 109.46679 * 179.97438 * 23 21 10 43 43 H 1.09002 * 109.47028 * 300.00045 * 23 21 10 44 44 H 1.08992 * 109.58481 * 353.41962 * 24 7 5 45 45 H 1.08998 * 109.58433 * 113.84573 * 24 7 5 46 46 H 1.09003 * 109.47070 * 29.99754 * 28 27 3 47 47 H 1.08998 * 109.47242 * 149.99635 * 28 27 3 48 48 H 1.09000 * 109.46997 * 179.97438 * 29 28 27 49 49 H 1.09003 * 109.46798 * 299.99763 * 29 28 27 50 50 H 1.08998 * 109.47468 * 59.99616 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3037 2.1883 -1.0969 5 6 2.1551 1.7664 -2.5027 6 8 1.8656 0.6148 -2.7645 7 7 2.3401 2.6575 -3.4968 8 6 2.0955 2.2800 -4.8955 9 6 1.1239 3.2889 -5.5160 10 6 1.6790 4.7036 -5.3346 11 1 2.6588 4.7725 -5.8071 12 7 0.7685 5.6684 -5.9558 13 6 0.8695 5.9418 -7.2938 14 1 1.6203 5.4457 -7.8912 15 6 0.0071 6.8565 -7.8824 16 7 -0.9074 7.4615 -7.1544 17 14 0.1445 7.2289 -9.7078 18 1 -0.7234 6.2956 -10.4701 19 1 -0.2883 8.6265 -9.9618 20 1 1.5544 7.0604 -10.1426 21 6 1.8102 5.0143 -3.8418 22 1 0.8350 4.9212 -3.3637 23 6 2.3342 6.4404 -3.6612 24 6 2.7842 4.0266 -3.2019 25 7 2.7300 3.3925 -0.6789 26 7 2.7404 3.4222 0.6084 27 7 2.3002 2.1783 1.0826 28 6 2.1593 1.7784 2.4849 29 6 0.7501 2.1195 2.9734 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0358 2.2915 -5.4469 36 1 1.6618 1.2807 -4.9339 37 1 1.0088 3.0768 -6.5789 38 1 0.1551 3.2117 -5.0225 39 1 0.0941 6.1138 -5.4194 40 1 -1.5103 8.1003 -7.5657 41 1 1.6385 7.1438 -4.1188 42 1 2.4270 6.6614 -2.5978 43 1 3.3099 6.5321 -4.1383 44 1 2.8023 4.1804 -2.1230 45 1 3.7817 4.1836 -3.6123 46 1 2.3251 0.7048 2.5749 47 1 2.8926 2.3113 3.0901 48 1 0.6452 1.8215 4.0166 49 1 0.5843 3.1930 2.8833 50 1 0.0168 1.5866 2.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036197231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:35 Heat of formation + Delta-G solvation = 52.716454 kcal Electronic energy + Delta-G solvation = -30297.354560 eV Core-core repulsion = 26361.312629 eV Total energy + Delta-G solvation = -3936.041931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.45211 -41.01124 -39.01390 -36.93882 -36.08370 -34.78879 -34.19502 -33.29866 -31.71530 -31.37450 -30.44077 -27.58419 -26.81036 -25.77220 -25.24387 -24.63465 -23.54310 -22.93948 -21.46448 -21.18893 -20.45165 -19.13033 -18.50798 -17.53060 -17.22244 -16.87890 -16.67001 -16.06924 -15.90756 -15.77825 -15.58423 -15.46782 -15.02143 -14.84242 -14.70940 -14.38732 -14.10106 -14.01194 -13.80418 -13.58153 -13.40839 -13.30464 -13.08212 -13.05761 -12.84221 -12.75492 -12.60864 -12.40448 -12.23561 -12.14759 -12.01628 -11.89612 -11.84084 -11.78681 -11.59322 -11.24899 -11.19144 -10.89223 -10.61913 -10.26869 -9.62630 -8.95998 -7.90574 -5.18276 0.09493 0.55066 1.06972 1.47903 1.49217 1.57459 1.93234 2.18954 2.58176 3.05243 3.28962 3.42276 3.51447 3.64928 3.81590 3.83499 3.96510 4.04215 4.11652 4.18361 4.20367 4.25125 4.32131 4.38758 4.42549 4.47020 4.52335 4.59737 4.71251 4.74147 4.80666 4.86005 4.87079 4.96184 4.97927 5.06966 5.08464 5.16325 5.18721 5.31046 5.31565 5.39377 5.45155 5.50934 5.53528 5.59393 5.70791 6.30631 6.34003 6.82864 7.09500 7.37059 8.12878 8.37262 9.33093 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002750 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.634226 B =10180.405627 C =10665.169888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.137 3.863 4 C -0.125 4.125 5 C 0.599 3.401 6 O -0.560 6.560 7 N -0.593 5.593 8 C 0.122 3.878 9 C -0.138 4.138 10 C 0.180 3.820 11 H 0.047 0.953 12 N -0.731 5.731 13 C -0.231 4.231 14 H 0.076 0.924 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.969 3.031 18 H -0.290 1.290 19 H -0.298 1.298 20 H -0.269 1.269 21 C -0.096 4.096 22 H 0.048 0.952 23 C -0.126 4.126 24 C 0.084 3.916 25 N -0.221 5.221 26 N -0.087 5.087 27 N -0.343 5.343 28 C 0.103 3.897 29 C -0.171 4.171 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.148 0.852 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.121 0.879 48 H 0.114 0.886 49 H 0.048 0.952 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -17.472 24.458 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.002 4.002 4 C -0.265 4.265 5 C 0.387 3.613 6 O -0.439 6.439 7 N -0.324 5.324 8 C -0.001 4.001 9 C -0.179 4.179 10 C 0.071 3.929 11 H 0.065 0.935 12 N -0.369 5.369 13 C -0.363 4.363 14 H 0.094 0.906 15 C -0.269 4.269 16 N -0.622 5.622 17 Si 0.799 3.201 18 H -0.217 1.217 19 H -0.225 1.225 20 H -0.194 1.194 21 C -0.116 4.116 22 H 0.066 0.934 23 C -0.184 4.184 24 C -0.040 4.040 25 N -0.093 5.093 26 N -0.066 5.066 27 N -0.129 5.129 28 C -0.016 4.016 29 C -0.229 4.229 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.164 0.836 45 H 0.092 0.908 46 H 0.154 0.846 47 H 0.139 0.861 48 H 0.132 0.868 49 H 0.068 0.932 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.200 -16.652 24.613 30.828 hybrid contribution -0.980 0.193 -1.506 1.807 sum 7.220 -16.459 23.107 29.274 Atomic orbital electron populations 1.21731 0.92718 1.03885 1.01600 1.20616 0.97408 0.85569 1.06592 1.22271 0.95229 0.96983 0.85694 1.21210 1.16994 0.92885 0.95392 1.17015 0.76532 0.84623 0.83145 1.90698 1.51118 1.18378 1.83740 1.47992 1.65165 1.12634 1.06562 1.21629 0.99659 0.98776 0.79995 1.22455 0.98214 0.96911 1.00334 1.20434 0.92753 0.87952 0.91763 0.93509 1.42584 1.39162 1.48584 1.06610 1.19603 1.12480 1.17697 0.86484 0.90626 1.25501 0.98960 1.00546 1.01931 1.69822 1.23457 1.32722 1.36237 0.85194 0.77838 0.76411 0.80675 1.21723 1.22476 1.19386 1.21478 0.98679 0.96063 0.95365 0.93388 1.21538 1.00833 0.94824 1.01213 1.22837 0.96587 0.78414 1.06176 1.73989 1.12985 1.18004 1.04308 1.81910 1.20374 1.00927 1.03343 1.50802 1.43438 1.09814 1.08887 1.22570 1.01050 1.04324 0.73637 1.22268 0.94182 1.02298 1.04142 0.94830 0.89120 0.91414 0.88032 0.86236 0.90008 0.89348 0.91676 0.94150 0.79781 0.94247 0.94171 0.91583 0.92396 0.83621 0.90785 0.84584 0.86134 0.86775 0.93235 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.90 71.98 0.71 -1.20 16 2 C -0.06 -0.87 5.69 29.85 0.17 -0.70 16 3 C 0.14 2.77 6.27 41.72 0.26 3.03 16 4 C -0.13 -3.46 6.77 40.82 0.28 -3.18 16 5 C 0.60 18.79 7.69 86.69 0.67 19.46 16 6 O -0.56 -18.50 14.13 -4.02 -0.06 -18.55 16 7 N -0.59 -18.81 2.98 -823.49 -2.45 -21.26 16 8 C 0.12 3.85 6.42 86.36 0.55 4.41 16 9 C -0.14 -5.23 5.66 30.67 0.17 -5.06 16 10 C 0.18 7.35 2.20 45.02 0.10 7.45 16 11 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 12 N -0.73 -37.52 4.41 -322.81 -1.42 -38.94 16 13 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 14 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 15 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 16 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 17 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C -0.10 -3.44 2.44 -10.86 -0.03 -3.46 16 22 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 23 C -0.13 -4.41 9.03 71.98 0.65 -3.76 16 24 C 0.08 2.58 5.57 86.22 0.48 3.06 16 25 N -0.22 -6.31 8.63 -49.99 -0.43 -6.75 16 26 N -0.09 -2.18 13.78 37.02 0.51 -1.67 16 27 N -0.34 -5.91 3.63 -333.78 -1.21 -7.12 16 28 C 0.10 0.65 7.02 86.38 0.61 1.25 16 29 C -0.17 -0.98 10.24 71.98 0.74 -0.24 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.70 6.13 -2.39 -0.01 0.69 16 33 H 0.10 1.86 6.32 -2.39 -0.02 1.85 16 34 H 0.12 0.65 7.18 -2.38 -0.02 0.63 16 35 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.09 2.77 7.03 -2.39 -0.02 2.75 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.37 20.77 7.51 -92.71 -0.70 20.07 16 40 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.04 1.65 7.36 -2.39 -0.02 1.63 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.15 4.48 3.60 -105.07 -0.38 4.11 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.14 -0.03 7.16 -2.39 -0.02 -0.05 16 47 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 49 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.06 0.44 6.13 -2.39 -0.01 0.42 16 Total: -1.00 -73.88 392.16 3.79 -70.09 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.11 Total: 30.52 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.66 Total: 4.94 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -4.73 Total: -136.04 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.88 3.79 -70.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036197231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.807 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds