Wall clock time and date at job start Tue Mar 31 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36592 * 126.58120 * 2 1 4 4 C 1.47524 * 125.77241 * 0.02562 * 3 2 1 5 5 O 1.21591 * 119.99844 * 353.94126 * 4 3 2 6 6 N 1.34771 * 120.00093 * 173.94125 * 4 3 2 7 7 C 1.46931 * 120.63126 * 4.34153 * 6 4 3 8 8 C 1.52757 * 109.00859 * 233.58590 * 7 6 4 9 9 C 1.53039 * 109.38410 * 305.58451 * 8 7 6 10 10 H 1.09005 * 109.46050 * 181.26188 * 9 8 7 11 11 N 1.46501 * 109.46330 * 301.22542 * 9 8 7 12 12 C 1.36938 * 119.99243 * 275.06436 * 11 9 8 13 13 H 1.07996 * 120.00863 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99382 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99965 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47094 * 59.99967 * 16 14 12 18 18 H 1.48499 * 109.46995 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47040 * 300.00268 * 16 14 12 20 20 C 1.53043 * 109.53425 * 61.24744 * 9 8 7 21 21 H 1.08994 * 109.50283 * 58.58312 * 20 9 8 22 22 C 1.53004 * 109.49665 * 178.68506 * 20 9 8 23 23 C 1.46927 * 120.63332 * 184.62773 * 6 4 3 24 24 N 1.34401 * 108.45612 * 180.22851 * 3 2 1 25 25 N 1.28763 * 109.52287 * 359.77991 * 24 3 2 26 26 N 1.34810 * 126.57650 * 179.84357 * 2 1 3 27 27 C 1.46507 * 126.59660 * 0.03814 * 26 2 1 28 28 C 1.52999 * 109.47103 * 239.70991 * 27 26 2 29 29 C 1.53006 * 109.46881 * 119.71332 * 27 26 2 30 30 H 1.08996 * 109.46904 * 270.15762 * 1 2 3 31 31 H 1.08999 * 109.46704 * 30.15685 * 1 2 3 32 32 H 1.09000 * 109.46696 * 150.15355 * 1 2 3 33 33 H 1.09001 * 109.58619 * 353.42108 * 7 6 4 34 34 H 1.09005 * 109.58198 * 113.84217 * 7 6 4 35 35 H 1.09003 * 109.55919 * 185.55384 * 8 7 6 36 36 H 1.09000 * 109.38567 * 65.51923 * 8 7 6 37 37 H 0.96990 * 120.00084 * 95.06427 * 11 9 8 38 38 H 0.96999 * 120.00267 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.46869 * 179.83482 * 22 20 9 40 40 H 1.09004 * 109.46607 * 299.83025 * 22 20 9 41 41 H 1.08994 * 109.47261 * 59.82897 * 22 20 9 42 42 H 1.09004 * 109.58331 * 246.15967 * 23 6 4 43 43 H 1.09002 * 109.58255 * 6.42998 * 23 6 4 44 44 H 1.08996 * 109.46690 * 359.71553 * 27 26 2 45 45 H 1.08996 * 109.47175 * 60.00481 * 28 27 26 46 46 H 1.08996 * 109.47349 * 300.00153 * 28 27 26 47 47 H 1.09006 * 109.46860 * 179.97438 * 28 27 26 48 48 H 1.09009 * 109.46774 * 299.99884 * 29 27 26 49 49 H 1.08996 * 109.47282 * 60.00023 * 29 27 26 50 50 H 1.08998 * 109.47053 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5027 0.0005 5 8 0.6917 2.7646 -0.1101 6 7 2.7757 3.4966 0.1237 7 6 4.2145 3.2015 0.1629 8 6 4.8199 3.8416 1.4107 9 6 4.4835 5.3344 1.4299 10 1 4.9339 5.7969 2.3083 11 7 5.0112 5.9693 0.2197 12 6 6.3120 6.3956 0.1818 13 1 6.9490 6.2634 1.0438 14 6 6.8122 6.9967 -0.9651 15 7 6.0360 7.1574 -2.0159 16 14 8.5868 7.5776 -1.0172 17 1 9.4926 6.4223 -0.7935 18 1 8.8715 8.1808 -2.3440 19 1 8.8070 8.5920 0.0447 20 6 2.9648 5.5161 1.4803 21 1 2.5685 5.0227 2.3677 22 6 2.6304 7.0083 1.5325 23 6 2.3385 4.8955 0.2276 24 7 3.5984 0.6787 -0.0051 25 7 3.6299 -0.6085 -0.0036 26 7 2.3104 -1.0826 0.0030 27 6 1.8863 -2.4849 0.0060 28 6 2.4344 -3.1808 1.2535 29 6 2.4238 -3.1830 -1.2450 30 1 -0.3633 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5115 33 1 4.3654 2.1225 0.1975 34 1 4.6959 3.6115 -0.7251 35 1 5.9023 3.7127 1.3985 36 1 4.4067 3.3640 2.2991 37 1 4.4392 6.0877 -0.5547 38 1 6.3856 7.5771 -2.8175 39 1 1.5486 7.1373 1.5654 40 1 3.0762 7.4494 2.4241 41 1 3.0283 7.5011 0.6455 42 1 2.6638 5.4464 -0.6550 43 1 1.2517 4.9340 0.3022 44 1 0.7975 -2.5351 0.0106 45 1 2.0516 -2.6836 2.1447 46 1 3.5232 -3.1305 1.2488 47 1 2.1185 -4.2241 1.2559 48 1 2.0333 -2.6871 -2.1338 49 1 3.5126 -3.1327 -1.2497 50 1 2.1079 -4.2262 -1.2430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036240924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:52 Heat of formation + Delta-G solvation = 78.083811 kcal Electronic energy + Delta-G solvation = -30421.421135 eV Core-core repulsion = 26486.479215 eV Total energy + Delta-G solvation = -3934.941920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39794 -39.65700 -37.55771 -36.70090 -34.22524 -33.11916 -32.76222 -31.33477 -30.95736 -29.05758 -28.13777 -27.84093 -26.12539 -24.99597 -24.15690 -23.36697 -22.40465 -21.51084 -20.47254 -19.61583 -18.22761 -17.28326 -17.22273 -16.31939 -16.20571 -15.78503 -14.87448 -14.86545 -14.63270 -14.24978 -14.22250 -13.86515 -13.69018 -13.48539 -13.41434 -13.25306 -13.10218 -12.82213 -12.74036 -12.68134 -12.42533 -12.31326 -12.02096 -11.94786 -11.71284 -11.40993 -11.33466 -11.12645 -10.89182 -10.77151 -10.63948 -10.37979 -10.31773 -10.14346 -9.96617 -9.72366 -9.48259 -9.37083 -9.14980 -8.77611 -8.05632 -6.86507 -5.69703 -2.97233 1.06951 1.77729 1.84934 3.32419 3.48678 3.48889 3.53488 3.53946 3.93184 4.08590 4.29381 4.40110 4.47121 4.65675 4.66256 4.87541 5.00938 5.04965 5.18872 5.19296 5.24659 5.31844 5.44035 5.46213 5.51550 5.53122 5.61947 5.71713 5.75200 5.79428 5.79893 5.97986 6.06762 6.14190 6.21061 6.28896 6.33925 6.38351 6.55266 6.62220 6.70671 6.82319 6.91033 6.95127 7.09299 7.19627 7.77020 7.78999 8.01871 8.45421 8.49146 9.60418 10.18469 10.53713 11.52930 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.003103 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.325264 B = 9020.840817 C =10041.976417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.117 3.883 3 C -0.093 4.093 4 C 0.598 3.402 5 O -0.555 6.555 6 N -0.580 5.580 7 C 0.075 3.925 8 C -0.145 4.145 9 C 0.177 3.823 10 H 0.048 0.952 11 N -0.718 5.718 12 C -0.234 4.234 13 H 0.068 0.932 14 C -0.013 4.013 15 N -0.934 5.934 16 Si 0.904 3.096 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.288 1.288 20 C -0.107 4.107 21 H 0.064 0.936 22 C -0.137 4.137 23 C 0.119 3.881 24 N -0.196 5.196 25 N -0.069 5.069 26 N -0.357 5.357 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.164 4.164 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -20.909 5.898 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.020 4.020 3 C -0.232 4.232 4 C 0.385 3.615 5 O -0.434 6.434 6 N -0.310 5.310 7 C -0.048 4.048 8 C -0.186 4.186 9 C 0.067 3.933 10 H 0.066 0.934 11 N -0.360 5.360 12 C -0.365 4.365 13 H 0.086 0.914 14 C -0.209 4.209 15 N -0.582 5.582 16 Si 0.735 3.265 17 H -0.214 1.214 18 H -0.219 1.219 19 H -0.215 1.215 20 C -0.127 4.127 21 H 0.083 0.917 22 C -0.194 4.194 23 C -0.003 4.003 24 N -0.068 5.068 25 N -0.047 5.047 26 N -0.145 5.145 27 C 0.043 3.957 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.188 -21.151 5.841 25.101 hybrid contribution 0.123 0.524 -0.330 0.631 sum -12.066 -20.627 5.512 24.524 Atomic orbital electron populations 1.20718 0.84916 1.05350 1.04439 1.21853 0.96122 0.86301 0.97742 1.21266 0.88805 0.95501 1.17593 1.16766 0.85218 0.82495 0.77068 1.90695 1.16330 1.83374 1.53036 1.47937 1.07754 1.06158 1.69119 1.22714 0.77640 1.04578 0.99833 1.22389 1.00989 0.99001 0.96240 1.20244 0.90404 0.91024 0.91620 0.93386 1.42450 1.11078 1.70232 1.12261 1.19179 0.88022 1.31066 0.98234 0.91362 1.24689 0.97813 1.02033 0.96355 1.69639 1.35108 1.49556 1.03926 0.86316 0.85197 0.78460 0.76494 1.21378 1.21880 1.21463 1.21694 0.97548 0.96398 0.97103 0.91738 1.21665 0.99596 0.95021 1.03162 1.21693 0.99757 0.80013 0.98839 1.74271 1.18512 1.03265 1.10765 1.81969 0.96375 1.03956 1.22395 1.50609 1.06363 1.07081 1.50406 1.21623 1.00368 0.75467 0.98276 1.22152 1.03299 1.00758 0.95808 1.22168 1.03388 1.00757 0.95825 0.89310 0.86699 0.90960 0.85282 0.90319 0.90937 0.93831 0.78126 0.93579 0.93821 0.92866 0.91017 0.90531 0.89808 0.87395 0.91735 0.90608 0.90001 0.91690 0.90592 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.47 36.01 0.34 -0.49 16 2 C 0.12 1.42 7.02 -81.87 -0.57 0.84 16 3 C -0.09 -1.45 6.77 -83.55 -0.57 -2.01 16 4 C 0.60 10.49 7.69 -12.48 -0.10 10.39 16 5 O -0.56 -10.09 14.13 5.29 0.07 -10.02 16 6 N -0.58 -10.56 2.98 -174.26 -0.52 -11.07 16 7 C 0.08 1.42 6.03 -3.93 -0.02 1.40 16 8 C -0.15 -2.73 5.76 -26.84 -0.15 -2.88 16 9 C 0.18 3.55 2.53 -67.89 -0.17 3.38 16 10 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 11 N -0.72 -17.39 3.64 -53.38 -0.19 -17.59 16 12 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 13 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 14 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 16 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 C -0.11 -1.87 2.67 -90.50 -0.24 -2.11 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 C -0.14 -2.28 9.06 37.16 0.34 -1.95 16 23 C 0.12 2.14 5.41 -3.71 -0.02 2.12 16 24 N -0.20 -3.20 8.64 32.85 0.28 -2.92 16 25 N -0.07 -0.98 13.67 60.35 0.82 -0.16 16 26 N -0.36 -3.89 3.28 -50.40 -0.17 -4.05 16 27 C 0.14 0.93 3.68 -67.92 -0.25 0.68 16 28 C -0.16 -0.90 9.47 37.16 0.35 -0.54 16 29 C -0.16 -0.94 9.47 37.16 0.35 -0.58 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.23 6.33 -51.93 -0.33 0.90 16 32 H 0.07 0.40 7.19 -51.93 -0.37 0.03 16 33 H 0.13 2.37 3.61 -130.91 -0.47 1.90 16 34 H 0.08 1.73 7.74 -51.93 -0.40 1.33 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.38 9.92 5.92 -40.82 -0.24 9.68 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 42 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 43 H 0.08 1.45 7.03 -51.93 -0.37 1.08 16 44 H 0.11 0.43 6.79 -51.93 -0.35 0.08 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -32.41 391.42 -7.37 -39.77 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.31 Total: 8.65 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.96 Total: 1.27 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.95 Total: -63.07 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.41 -7.37 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036240924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.858 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds