Wall clock time and date at job start Tue Mar 31 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36592 * 126.58120 * 2 1 4 4 C 1.47524 * 125.77241 * 0.02562 * 3 2 1 5 5 O 1.21591 * 119.99844 * 353.94126 * 4 3 2 6 6 N 1.34771 * 120.00093 * 173.94125 * 4 3 2 7 7 C 1.46931 * 120.63126 * 4.34153 * 6 4 3 8 8 C 1.52757 * 109.00859 * 233.58590 * 7 6 4 9 9 C 1.53039 * 109.38410 * 305.58451 * 8 7 6 10 10 H 1.09005 * 109.46050 * 181.26188 * 9 8 7 11 11 N 1.46501 * 109.46330 * 301.22542 * 9 8 7 12 12 C 1.36938 * 119.99243 * 275.06436 * 11 9 8 13 13 H 1.07996 * 120.00863 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99382 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99965 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47094 * 59.99967 * 16 14 12 18 18 H 1.48499 * 109.46995 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47040 * 300.00268 * 16 14 12 20 20 C 1.53043 * 109.53425 * 61.24744 * 9 8 7 21 21 H 1.08994 * 109.50283 * 58.58312 * 20 9 8 22 22 C 1.53004 * 109.49665 * 178.68506 * 20 9 8 23 23 C 1.46927 * 120.63332 * 184.62773 * 6 4 3 24 24 N 1.34401 * 108.45612 * 180.22851 * 3 2 1 25 25 N 1.28763 * 109.52287 * 359.77991 * 24 3 2 26 26 N 1.34810 * 126.57650 * 179.84357 * 2 1 3 27 27 C 1.46507 * 126.59660 * 0.03814 * 26 2 1 28 28 C 1.52999 * 109.47103 * 239.70991 * 27 26 2 29 29 C 1.53006 * 109.46881 * 119.71332 * 27 26 2 30 30 H 1.08996 * 109.46904 * 270.15762 * 1 2 3 31 31 H 1.08999 * 109.46704 * 30.15685 * 1 2 3 32 32 H 1.09000 * 109.46696 * 150.15355 * 1 2 3 33 33 H 1.09001 * 109.58619 * 353.42108 * 7 6 4 34 34 H 1.09005 * 109.58198 * 113.84217 * 7 6 4 35 35 H 1.09003 * 109.55919 * 185.55384 * 8 7 6 36 36 H 1.09000 * 109.38567 * 65.51923 * 8 7 6 37 37 H 0.96990 * 120.00084 * 95.06427 * 11 9 8 38 38 H 0.96999 * 120.00267 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.46869 * 179.83482 * 22 20 9 40 40 H 1.09004 * 109.46607 * 299.83025 * 22 20 9 41 41 H 1.08994 * 109.47261 * 59.82897 * 22 20 9 42 42 H 1.09004 * 109.58331 * 246.15967 * 23 6 4 43 43 H 1.09002 * 109.58255 * 6.42998 * 23 6 4 44 44 H 1.08996 * 109.46690 * 359.71553 * 27 26 2 45 45 H 1.08996 * 109.47175 * 60.00481 * 28 27 26 46 46 H 1.08996 * 109.47349 * 300.00153 * 28 27 26 47 47 H 1.09006 * 109.46860 * 179.97438 * 28 27 26 48 48 H 1.09009 * 109.46774 * 299.99884 * 29 27 26 49 49 H 1.08996 * 109.47282 * 60.00023 * 29 27 26 50 50 H 1.08998 * 109.47053 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5027 0.0005 5 8 0.6917 2.7646 -0.1101 6 7 2.7757 3.4966 0.1237 7 6 4.2145 3.2015 0.1629 8 6 4.8199 3.8416 1.4107 9 6 4.4835 5.3344 1.4299 10 1 4.9339 5.7969 2.3083 11 7 5.0112 5.9693 0.2197 12 6 6.3120 6.3956 0.1818 13 1 6.9490 6.2634 1.0438 14 6 6.8122 6.9967 -0.9651 15 7 6.0360 7.1574 -2.0159 16 14 8.5868 7.5776 -1.0172 17 1 9.4926 6.4223 -0.7935 18 1 8.8715 8.1808 -2.3440 19 1 8.8070 8.5920 0.0447 20 6 2.9648 5.5161 1.4803 21 1 2.5685 5.0227 2.3677 22 6 2.6304 7.0083 1.5325 23 6 2.3385 4.8955 0.2276 24 7 3.5984 0.6787 -0.0051 25 7 3.6299 -0.6085 -0.0036 26 7 2.3104 -1.0826 0.0030 27 6 1.8863 -2.4849 0.0060 28 6 2.4344 -3.1808 1.2535 29 6 2.4238 -3.1830 -1.2450 30 1 -0.3633 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5115 33 1 4.3654 2.1225 0.1975 34 1 4.6959 3.6115 -0.7251 35 1 5.9023 3.7127 1.3985 36 1 4.4067 3.3640 2.2991 37 1 4.4392 6.0877 -0.5547 38 1 6.3856 7.5771 -2.8175 39 1 1.5486 7.1373 1.5654 40 1 3.0762 7.4494 2.4241 41 1 3.0283 7.5011 0.6455 42 1 2.6638 5.4464 -0.6550 43 1 1.2517 4.9340 0.3022 44 1 0.7975 -2.5351 0.0106 45 1 2.0516 -2.6836 2.1447 46 1 3.5232 -3.1305 1.2488 47 1 2.1185 -4.2241 1.2559 48 1 2.0333 -2.6871 -2.1338 49 1 3.5126 -3.1327 -1.2497 50 1 2.1079 -4.2262 -1.2430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036240924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:51 Heat of formation + Delta-G solvation = 57.620966 kcal Electronic energy + Delta-G solvation = -30422.308471 eV Core-core repulsion = 26486.479215 eV Total energy + Delta-G solvation = -3935.829256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.42377 -41.07952 -39.04906 -37.42675 -35.86525 -34.49148 -33.98664 -33.01227 -31.94203 -30.92518 -29.08299 -28.26872 -27.49545 -26.56820 -25.43965 -24.90796 -23.56887 -23.02059 -21.32945 -20.85985 -19.71893 -19.24894 -18.28088 -17.36293 -17.23403 -17.15950 -16.60341 -16.05664 -15.86618 -15.73039 -15.42602 -15.20474 -14.91879 -14.86129 -14.42543 -14.26577 -14.09159 -14.06609 -13.95882 -13.63600 -13.24434 -13.22727 -13.17570 -12.98910 -12.81984 -12.75291 -12.67387 -12.52442 -12.47645 -12.26060 -12.15631 -12.03422 -11.92551 -11.57428 -11.36471 -11.18286 -11.14410 -10.97875 -10.58939 -10.22744 -9.54370 -8.90406 -7.87440 -5.13565 0.12061 0.57317 1.05416 1.48519 1.50909 1.56451 1.98617 2.18966 2.60479 3.09861 3.27723 3.45780 3.51658 3.67103 3.81877 3.84565 3.90645 3.98347 4.09855 4.13532 4.15863 4.23386 4.45389 4.50525 4.61142 4.62749 4.63522 4.64928 4.68458 4.72435 4.76139 4.79483 4.85250 4.92172 5.06371 5.10569 5.14653 5.19291 5.20799 5.23754 5.27514 5.30848 5.49299 5.51380 5.57970 5.60869 5.74026 6.34301 6.39973 6.85713 7.12228 7.41287 8.18144 8.42271 9.35928 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.003103 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.325264 B = 9020.840817 C =10041.976417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.134 3.866 3 C -0.128 4.128 4 C 0.598 3.402 5 O -0.564 6.564 6 N -0.587 5.587 7 C 0.087 3.913 8 C -0.137 4.137 9 C 0.172 3.828 10 H 0.047 0.953 11 N -0.723 5.723 12 C -0.228 4.228 13 H 0.074 0.926 14 C -0.075 4.075 15 N -0.970 5.970 16 Si 0.966 3.034 17 H -0.282 1.282 18 H -0.300 1.300 19 H -0.279 1.279 20 C -0.097 4.097 21 H 0.087 0.913 22 C -0.129 4.129 23 C 0.124 3.876 24 N -0.227 5.227 25 N -0.086 5.086 26 N -0.342 5.342 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.161 4.161 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.145 0.855 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 -23.505 7.543 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.005 4.005 3 C -0.267 4.267 4 C 0.386 3.614 5 O -0.444 6.444 6 N -0.317 5.317 7 C -0.037 4.037 8 C -0.177 4.177 9 C 0.064 3.936 10 H 0.065 0.935 11 N -0.364 5.364 12 C -0.360 4.360 13 H 0.091 0.909 14 C -0.267 4.267 15 N -0.621 5.621 16 Si 0.796 3.204 17 H -0.208 1.208 18 H -0.227 1.227 19 H -0.206 1.206 20 C -0.117 4.117 21 H 0.105 0.895 22 C -0.187 4.187 23 C 0.002 3.998 24 N -0.098 5.098 25 N -0.064 5.064 26 N -0.129 5.129 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.219 4.219 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.207 0.793 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.163 0.837 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.132 0.868 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.999 -23.798 7.535 28.619 hybrid contribution 0.569 1.141 -0.807 1.509 sum -13.430 -22.656 6.728 27.184 Atomic orbital electron populations 1.20866 0.82095 1.06335 1.05874 1.22321 0.97493 0.85464 0.95204 1.21215 0.89554 0.95384 1.20564 1.17020 0.84955 0.83179 0.76244 1.90677 1.16493 1.83828 1.53362 1.47933 1.07437 1.06430 1.69883 1.22518 0.78076 1.05068 0.97995 1.22264 1.00228 0.98139 0.97102 1.20454 0.92258 0.91249 0.89688 0.93468 1.42560 1.10162 1.70418 1.13306 1.19544 0.89177 1.29304 0.97980 0.90857 1.25421 1.01512 1.03419 0.96373 1.69806 1.36686 1.51280 1.04364 0.85316 0.80966 0.78056 0.76058 1.20803 1.22671 1.20568 1.21620 0.95356 0.97130 0.97582 0.89493 1.21591 1.01244 0.94052 1.01849 1.21589 1.00209 0.80004 0.98013 1.74085 1.19395 1.04351 1.11965 1.81862 0.98447 1.03151 1.22982 1.50976 1.05010 1.08554 1.48366 1.22239 1.02559 0.72953 0.99010 1.22161 1.01950 1.02528 0.95018 1.22184 1.02015 1.02586 0.95092 0.87382 0.88663 0.86996 0.84180 0.94387 0.92306 0.91561 0.79344 0.94378 0.91187 0.92157 0.94222 0.93301 0.88763 0.83703 0.92138 0.92647 0.86779 0.92411 0.92681 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.47 71.24 0.67 -0.63 16 2 C 0.13 2.98 7.02 41.72 0.29 3.28 16 3 C -0.13 -3.95 6.77 40.82 0.28 -3.67 16 4 C 0.60 20.95 7.69 86.69 0.67 21.62 16 5 O -0.56 -20.15 14.13 -4.00 -0.06 -20.21 16 6 N -0.59 -21.75 2.98 -823.49 -2.45 -24.20 16 7 C 0.09 3.41 6.03 86.22 0.52 3.93 16 8 C -0.14 -5.18 5.76 30.53 0.18 -5.00 16 9 C 0.17 6.94 2.53 45.02 0.11 7.05 16 10 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 11 N -0.72 -36.22 3.64 -322.80 -1.18 -37.39 16 12 C -0.23 -12.66 9.93 84.03 0.83 -11.82 16 13 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 14 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 15 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 16 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C -0.10 -3.32 2.67 -10.71 -0.03 -3.35 16 21 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 22 C -0.13 -4.25 9.06 71.98 0.65 -3.59 16 23 C 0.12 4.54 5.41 86.36 0.47 5.00 16 24 N -0.23 -7.47 8.64 -50.00 -0.43 -7.90 16 25 N -0.09 -2.44 13.67 37.02 0.51 -1.93 16 26 N -0.34 -6.77 3.28 -313.37 -1.03 -7.80 16 27 C 0.13 1.24 3.68 44.99 0.17 1.41 16 28 C -0.16 -1.28 9.47 71.98 0.68 -0.59 16 29 C -0.16 -1.41 9.47 71.98 0.68 -0.72 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.83 6.33 -2.39 -0.02 1.81 16 32 H 0.11 0.67 7.19 -2.39 -0.02 0.65 16 33 H 0.14 5.33 3.61 -104.58 -0.38 4.95 16 34 H 0.04 1.78 7.74 -2.38 -0.02 1.76 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.37 20.30 5.92 -92.72 -0.55 19.75 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.55 7.53 -2.39 -0.02 1.53 16 42 H 0.05 2.05 6.64 -2.38 -0.02 2.03 16 43 H 0.09 3.23 7.03 -2.39 -0.02 3.21 16 44 H 0.15 0.37 6.79 -2.39 -0.02 0.35 16 45 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -73.73 391.42 4.34 -69.39 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.03 Total: 31.84 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.64 Total: 8.99 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -4.30 Total: -139.32 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -73.73 4.34 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036240924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.013 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds