Wall clock time and date at job start Tue Mar 31 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36603 * 126.57819 * 2 1 4 4 C 1.47519 * 125.77116 * 0.02562 * 3 2 1 5 5 O 1.21588 * 120.00149 * 353.94493 * 4 3 2 6 6 N 1.34779 * 120.00040 * 173.94115 * 4 3 2 7 7 C 1.46921 * 120.63225 * 184.62495 * 6 4 3 8 8 C 1.53193 * 108.77612 * 126.37118 * 7 6 4 9 9 C 1.53041 * 109.31269 * 54.63662 * 8 7 6 10 10 H 1.09005 * 109.46150 * 178.62064 * 9 8 7 11 11 N 1.46499 * 109.46126 * 58.65527 * 9 8 7 12 12 C 1.36929 * 119.99776 * 85.00131 * 11 9 8 13 13 H 1.08001 * 120.00199 * 0.02562 * 12 11 9 14 14 C 1.38811 * 119.99994 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99785 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47117 * 90.00341 * 16 14 12 18 18 H 1.48500 * 109.47608 * 210.00771 * 16 14 12 19 19 H 1.48509 * 109.47182 * 330.00712 * 16 14 12 20 20 C 1.53040 * 109.53359 * 298.63539 * 9 8 7 21 21 H 1.09000 * 109.49905 * 301.41138 * 20 9 8 22 22 C 1.53004 * 109.49530 * 181.31971 * 20 9 8 23 23 C 1.46930 * 120.62946 * 4.34536 * 6 4 3 24 24 N 1.34398 * 108.45600 * 180.23139 * 3 2 1 25 25 N 1.28763 * 109.52575 * 359.77224 * 24 3 2 26 26 N 1.34814 * 126.58127 * 179.84042 * 2 1 3 27 27 C 1.46495 * 126.59632 * 0.04105 * 26 2 1 28 28 C 1.53004 * 109.47105 * 119.70904 * 27 26 2 29 29 C 1.52999 * 109.47255 * 239.71338 * 27 26 2 30 30 H 1.09002 * 109.47632 * 270.15605 * 1 2 3 31 31 H 1.09005 * 109.47120 * 30.15465 * 1 2 3 32 32 H 1.09000 * 109.47266 * 150.15547 * 1 2 3 33 33 H 1.08996 * 109.58960 * 246.15784 * 7 6 4 34 34 H 1.09001 * 109.58988 * 6.58628 * 7 6 4 35 35 H 1.08999 * 109.49992 * 174.58814 * 8 7 6 36 36 H 1.09000 * 109.49555 * 294.68397 * 8 7 6 37 37 H 0.97002 * 119.99525 * 264.99946 * 11 9 8 38 38 H 0.96999 * 119.99594 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47248 * 59.99697 * 22 20 9 40 40 H 1.09000 * 109.47236 * 179.97438 * 22 20 9 41 41 H 1.09005 * 109.47245 * 299.99768 * 22 20 9 42 42 H 1.09003 * 109.58453 * 353.42008 * 23 6 4 43 43 H 1.09001 * 109.58801 * 113.84080 * 23 6 4 44 44 H 1.09005 * 109.46919 * 359.71058 * 27 26 2 45 45 H 1.09004 * 109.46696 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.47211 * 60.00428 * 28 27 26 47 47 H 1.08999 * 109.46765 * 299.99979 * 28 27 26 48 48 H 1.08997 * 109.46821 * 180.02562 * 29 27 26 49 49 H 1.09005 * 109.46929 * 299.99714 * 29 27 26 50 50 H 1.08998 * 109.47542 * 59.99821 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6915 2.7646 -0.1100 6 7 2.7755 3.4968 0.1237 7 6 2.3382 4.8956 0.2275 8 6 2.9645 5.5163 1.4802 9 6 4.4832 5.3347 1.4298 10 1 4.9336 5.7971 2.3082 11 7 5.0108 5.9696 0.2196 12 6 5.3025 7.3075 0.2199 13 1 5.1440 7.8946 1.1124 14 6 5.8029 7.9090 -0.9267 15 7 5.9966 7.1935 -2.0143 16 14 6.2002 9.7343 -0.9266 17 1 7.6103 9.9339 -0.5061 18 1 6.0087 10.2827 -2.2933 19 1 5.2972 10.4374 0.0199 20 6 4.8197 3.8419 1.4105 21 1 4.4061 3.3642 2.2987 22 6 6.3389 3.6611 1.3934 23 6 4.2143 3.2017 0.1628 24 7 3.5983 0.6790 -0.0051 25 7 3.6298 -0.6083 -0.0035 26 7 2.3104 -1.0826 0.0030 27 6 1.8864 -2.4848 0.0061 28 6 2.4239 -3.1829 -1.2449 29 6 2.4344 -3.1806 1.2536 30 1 -0.3634 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3634 -0.8914 -0.5114 33 1 2.6634 5.4466 -0.6549 34 1 1.2516 4.9340 0.3049 35 1 2.7263 6.5793 1.5175 36 1 2.5683 5.0228 2.3677 37 1 5.1536 5.4422 -0.5819 38 1 6.3459 7.6139 -2.8156 39 1 6.7694 4.1189 2.2840 40 1 6.5782 2.5977 1.3801 41 1 6.7516 4.1378 0.5042 42 1 4.3651 2.1227 0.1974 43 1 4.6957 3.6117 -0.7251 44 1 0.7975 -2.5352 0.0108 45 1 2.1080 -4.2261 -1.2428 46 1 3.5126 -3.1326 -1.2496 47 1 2.0333 -2.6871 -2.1336 48 1 2.1193 -4.2241 1.2556 49 1 3.5233 -3.1303 1.2490 50 1 2.0516 -2.6834 2.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036240926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:57 Heat of formation + Delta-G solvation = 77.806331 kcal Electronic energy + Delta-G solvation = -30492.803245 eV Core-core repulsion = 26557.849292 eV Total energy + Delta-G solvation = -3934.953953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42088 -39.64398 -37.58595 -36.71693 -34.17752 -33.13627 -32.48629 -31.88290 -30.76859 -29.18628 -27.90060 -27.85464 -26.05651 -25.02677 -24.17093 -23.59009 -22.49743 -21.25072 -20.48657 -19.61441 -18.24683 -17.32234 -17.22680 -16.34634 -16.24982 -15.77346 -14.89999 -14.86299 -14.62875 -14.30560 -14.11530 -13.86683 -13.74984 -13.52122 -13.37448 -13.24979 -13.07338 -12.83817 -12.76064 -12.65527 -12.55159 -12.16653 -12.03280 -11.93016 -11.88102 -11.46048 -11.23380 -11.03798 -10.86223 -10.81287 -10.51263 -10.36385 -10.31732 -10.17983 -10.06559 -9.81899 -9.58206 -9.17638 -9.15852 -8.83130 -8.05653 -6.87155 -5.70322 -2.97924 1.05007 1.75517 1.82805 3.33173 3.47444 3.48415 3.52982 3.54269 3.91606 4.06602 4.27917 4.38717 4.44885 4.63481 4.65533 4.85771 4.99558 5.03323 5.17484 5.18266 5.24683 5.31664 5.43448 5.46950 5.55133 5.58223 5.60523 5.70880 5.75239 5.78697 5.81247 5.98996 6.02852 6.09064 6.27616 6.32057 6.37423 6.45430 6.61242 6.63053 6.71402 6.75999 6.85427 6.93288 7.11238 7.18552 7.76660 7.78429 7.98975 8.45574 8.48542 9.59876 10.18296 10.53639 11.52280 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002868 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.031681 B = 9759.167353 C =10167.834153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.118 3.882 3 C -0.093 4.093 4 C 0.598 3.402 5 O -0.553 6.553 6 N -0.580 5.580 7 C 0.120 3.880 8 C -0.148 4.148 9 C 0.177 3.823 10 H 0.048 0.952 11 N -0.718 5.718 12 C -0.234 4.234 13 H 0.069 0.931 14 C -0.014 4.014 15 N -0.933 5.933 16 Si 0.904 3.096 17 H -0.292 1.292 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.105 4.105 21 H 0.061 0.939 22 C -0.135 4.135 23 C 0.074 3.926 24 N -0.199 5.199 25 N -0.068 5.068 26 N -0.357 5.357 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.162 4.162 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -23.359 5.805 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.020 4.020 3 C -0.232 4.232 4 C 0.384 3.616 5 O -0.432 6.432 6 N -0.310 5.310 7 C -0.002 4.002 8 C -0.189 4.189 9 C 0.067 3.933 10 H 0.066 0.934 11 N -0.360 5.360 12 C -0.365 4.365 13 H 0.087 0.913 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.735 3.265 17 H -0.219 1.219 18 H -0.220 1.220 19 H -0.209 1.209 20 C -0.125 4.125 21 H 0.079 0.921 22 C -0.193 4.193 23 C -0.049 4.049 24 N -0.070 5.070 25 N -0.046 5.046 26 N -0.144 5.144 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.220 4.220 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.733 -23.472 5.759 26.055 hybrid contribution -0.550 1.140 -0.307 1.303 sum -10.283 -22.332 5.452 25.183 Atomic orbital electron populations 1.20721 0.84909 1.05375 1.04468 1.21861 0.96142 0.86286 0.97665 1.21301 0.88790 0.95556 1.17544 1.16770 0.85281 0.82430 0.77145 1.90699 1.16304 1.83332 1.52885 1.47929 1.07248 1.06635 1.69165 1.21617 0.99210 0.79323 1.00024 1.22515 0.99799 1.00671 0.95913 1.20242 0.90919 0.90522 0.91643 0.93377 1.42473 1.76378 1.07272 1.09913 1.19225 1.35044 0.85437 0.96800 0.91323 1.24697 1.02429 0.97708 0.96115 1.69657 1.51708 1.34740 1.02022 0.86240 0.78045 0.85603 0.76586 1.21916 1.21957 1.20903 1.21567 0.96347 0.97158 0.97421 0.92072 1.21642 0.94565 1.00123 1.02972 1.22807 0.78371 1.05094 0.98638 1.74202 1.18557 1.03347 1.10943 1.81956 0.96402 1.03880 1.22402 1.50597 1.06338 1.07091 1.50395 1.21627 1.00396 0.75441 0.98282 1.22167 1.03371 1.00773 0.95822 1.22152 1.03286 1.00770 0.95806 0.89286 0.86681 0.90942 0.89896 0.90390 0.90853 0.93516 0.78055 0.93624 0.93095 0.93681 0.91120 0.84735 0.90955 0.87381 0.89992 0.90595 0.91683 0.89991 0.90617 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.47 36.00 0.34 -0.49 16 2 C 0.12 1.40 7.02 -81.88 -0.57 0.83 16 3 C -0.09 -1.42 6.77 -83.55 -0.57 -1.99 16 4 C 0.60 10.48 7.69 -12.48 -0.10 10.38 16 5 O -0.55 -10.21 14.13 5.29 0.07 -10.14 16 6 N -0.58 -10.57 2.98 -174.27 -0.52 -11.09 16 7 C 0.12 2.28 6.16 -3.71 -0.02 2.26 16 8 C -0.15 -2.75 5.78 -26.61 -0.15 -2.90 16 9 C 0.18 3.55 2.53 -67.89 -0.17 3.38 16 10 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 11 N -0.72 -17.41 3.64 -53.39 -0.19 -17.60 16 12 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 15 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 16 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 C -0.10 -1.85 2.66 -90.72 -0.24 -2.09 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 22 C -0.14 -2.32 9.05 37.16 0.34 -1.98 16 23 C 0.07 1.34 5.28 -3.94 -0.02 1.32 16 24 N -0.20 -3.11 8.64 32.85 0.28 -2.83 16 25 N -0.07 -0.94 13.67 60.35 0.82 -0.11 16 26 N -0.36 -3.76 3.28 -50.41 -0.17 -3.93 16 27 C 0.14 0.89 3.68 -67.93 -0.25 0.64 16 28 C -0.16 -0.89 9.47 37.16 0.35 -0.54 16 29 C -0.16 -0.85 9.47 37.16 0.35 -0.50 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 1.23 6.33 -51.93 -0.33 0.91 16 32 H 0.07 0.39 7.19 -51.93 -0.37 0.02 16 33 H 0.08 1.80 7.74 -51.93 -0.40 1.39 16 34 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.38 9.98 5.94 -40.82 -0.24 9.74 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.39 7.54 -51.93 -0.39 1.00 16 42 H 0.14 2.32 3.61 -130.93 -0.47 1.85 16 43 H 0.07 1.46 6.64 -51.93 -0.34 1.12 16 44 H 0.11 0.41 6.79 -51.93 -0.35 0.06 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -32.37 391.44 -7.37 -39.74 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.31 Total: 8.53 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.96 Total: 1.33 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.95 Total: -62.81 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.37 -7.37 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036240926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.542 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds