Wall clock time and date at job start Tue Mar 31 2020 18:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36603 * 126.57819 * 2 1 4 4 C 1.47519 * 125.77116 * 0.02562 * 3 2 1 5 5 O 1.21588 * 120.00149 * 353.94493 * 4 3 2 6 6 N 1.34779 * 120.00040 * 173.94115 * 4 3 2 7 7 C 1.46921 * 120.63225 * 184.62495 * 6 4 3 8 8 C 1.53193 * 108.77612 * 126.37118 * 7 6 4 9 9 C 1.53041 * 109.31269 * 54.63662 * 8 7 6 10 10 H 1.09005 * 109.46150 * 178.62064 * 9 8 7 11 11 N 1.46499 * 109.46126 * 58.65527 * 9 8 7 12 12 C 1.36929 * 119.99776 * 85.00131 * 11 9 8 13 13 H 1.08001 * 120.00199 * 0.02562 * 12 11 9 14 14 C 1.38811 * 119.99994 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99785 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47117 * 90.00341 * 16 14 12 18 18 H 1.48500 * 109.47608 * 210.00771 * 16 14 12 19 19 H 1.48509 * 109.47182 * 330.00712 * 16 14 12 20 20 C 1.53040 * 109.53359 * 298.63539 * 9 8 7 21 21 H 1.09000 * 109.49905 * 301.41138 * 20 9 8 22 22 C 1.53004 * 109.49530 * 181.31971 * 20 9 8 23 23 C 1.46930 * 120.62946 * 4.34536 * 6 4 3 24 24 N 1.34398 * 108.45600 * 180.23139 * 3 2 1 25 25 N 1.28763 * 109.52575 * 359.77224 * 24 3 2 26 26 N 1.34814 * 126.58127 * 179.84042 * 2 1 3 27 27 C 1.46495 * 126.59632 * 0.04105 * 26 2 1 28 28 C 1.53004 * 109.47105 * 119.70904 * 27 26 2 29 29 C 1.52999 * 109.47255 * 239.71338 * 27 26 2 30 30 H 1.09002 * 109.47632 * 270.15605 * 1 2 3 31 31 H 1.09005 * 109.47120 * 30.15465 * 1 2 3 32 32 H 1.09000 * 109.47266 * 150.15547 * 1 2 3 33 33 H 1.08996 * 109.58960 * 246.15784 * 7 6 4 34 34 H 1.09001 * 109.58988 * 6.58628 * 7 6 4 35 35 H 1.08999 * 109.49992 * 174.58814 * 8 7 6 36 36 H 1.09000 * 109.49555 * 294.68397 * 8 7 6 37 37 H 0.97002 * 119.99525 * 264.99946 * 11 9 8 38 38 H 0.96999 * 119.99594 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47248 * 59.99697 * 22 20 9 40 40 H 1.09000 * 109.47236 * 179.97438 * 22 20 9 41 41 H 1.09005 * 109.47245 * 299.99768 * 22 20 9 42 42 H 1.09003 * 109.58453 * 353.42008 * 23 6 4 43 43 H 1.09001 * 109.58801 * 113.84080 * 23 6 4 44 44 H 1.09005 * 109.46919 * 359.71058 * 27 26 2 45 45 H 1.09004 * 109.46696 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.47211 * 60.00428 * 28 27 26 47 47 H 1.08999 * 109.46765 * 299.99979 * 28 27 26 48 48 H 1.08997 * 109.46821 * 180.02562 * 29 27 26 49 49 H 1.09005 * 109.46929 * 299.99714 * 29 27 26 50 50 H 1.08998 * 109.47542 * 59.99821 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6915 2.7646 -0.1100 6 7 2.7755 3.4968 0.1237 7 6 2.3382 4.8956 0.2275 8 6 2.9645 5.5163 1.4802 9 6 4.4832 5.3347 1.4298 10 1 4.9336 5.7971 2.3082 11 7 5.0108 5.9696 0.2196 12 6 5.3025 7.3075 0.2199 13 1 5.1440 7.8946 1.1124 14 6 5.8029 7.9090 -0.9267 15 7 5.9966 7.1935 -2.0143 16 14 6.2002 9.7343 -0.9266 17 1 7.6103 9.9339 -0.5061 18 1 6.0087 10.2827 -2.2933 19 1 5.2972 10.4374 0.0199 20 6 4.8197 3.8419 1.4105 21 1 4.4061 3.3642 2.2987 22 6 6.3389 3.6611 1.3934 23 6 4.2143 3.2017 0.1628 24 7 3.5983 0.6790 -0.0051 25 7 3.6298 -0.6083 -0.0035 26 7 2.3104 -1.0826 0.0030 27 6 1.8864 -2.4848 0.0061 28 6 2.4239 -3.1829 -1.2449 29 6 2.4344 -3.1806 1.2536 30 1 -0.3634 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3634 -0.8914 -0.5114 33 1 2.6634 5.4466 -0.6549 34 1 1.2516 4.9340 0.3049 35 1 2.7263 6.5793 1.5175 36 1 2.5683 5.0228 2.3677 37 1 5.1536 5.4422 -0.5819 38 1 6.3459 7.6139 -2.8156 39 1 6.7694 4.1189 2.2840 40 1 6.5782 2.5977 1.3801 41 1 6.7516 4.1378 0.5042 42 1 4.3651 2.1227 0.1974 43 1 4.6957 3.6117 -0.7251 44 1 0.7975 -2.5352 0.0108 45 1 2.1080 -4.2261 -1.2428 46 1 3.5126 -3.1326 -1.2496 47 1 2.0333 -2.6871 -2.1336 48 1 2.1193 -4.2241 1.2556 49 1 3.5233 -3.1303 1.2490 50 1 2.0516 -2.6834 2.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036240926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:55 Heat of formation + Delta-G solvation = 57.445714 kcal Electronic energy + Delta-G solvation = -30493.686148 eV Core-core repulsion = 26557.849292 eV Total energy + Delta-G solvation = -3935.836855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.42128 -41.06788 -39.08327 -37.41120 -35.85393 -34.29045 -33.93419 -33.35858 -31.94376 -30.92059 -28.85502 -28.25565 -27.54629 -26.56235 -25.45892 -25.00205 -23.85670 -22.59682 -21.36265 -20.87179 -19.72290 -19.24821 -18.32720 -17.36137 -17.22422 -17.18194 -16.59358 -16.05176 -15.89233 -15.61731 -15.42815 -15.34511 -14.92358 -14.69493 -14.43757 -14.36614 -14.10050 -14.00079 -13.96410 -13.53196 -13.38267 -13.23440 -13.17532 -12.97075 -12.84382 -12.74551 -12.64111 -12.52490 -12.47729 -12.17069 -12.08590 -11.98189 -11.86296 -11.69818 -11.52550 -11.21068 -11.15404 -10.86459 -10.58687 -10.22340 -9.54674 -8.91066 -7.87444 -5.13814 0.12291 0.57627 1.05330 1.48865 1.49686 1.57745 1.98776 2.19038 2.60298 3.08754 3.27933 3.45796 3.51980 3.67659 3.83050 3.85774 3.92288 3.99454 4.08252 4.14955 4.21481 4.27559 4.37854 4.48372 4.58575 4.61869 4.63753 4.65915 4.70149 4.72838 4.77476 4.81769 4.86691 4.97347 5.08775 5.10776 5.16076 5.18999 5.20622 5.22298 5.27485 5.32716 5.38625 5.54373 5.57671 5.63202 5.73528 6.34253 6.40705 6.85846 7.12074 7.41157 8.18101 8.42296 9.36093 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002868 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.031681 B = 9759.167353 C =10167.834153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.134 3.866 3 C -0.127 4.127 4 C 0.597 3.403 5 O -0.566 6.566 6 N -0.587 5.587 7 C 0.128 3.872 8 C -0.138 4.138 9 C 0.172 3.828 10 H 0.048 0.952 11 N -0.724 5.724 12 C -0.227 4.227 13 H 0.075 0.925 14 C -0.076 4.076 15 N -0.970 5.970 16 Si 0.966 3.034 17 H -0.290 1.290 18 H -0.301 1.301 19 H -0.271 1.271 20 C -0.096 4.096 21 H 0.082 0.918 22 C -0.128 4.128 23 C 0.083 3.917 24 N -0.224 5.224 25 N -0.082 5.082 26 N -0.341 5.341 27 C 0.131 3.869 28 C -0.161 4.161 29 C -0.159 4.159 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.150 0.850 43 H 0.040 0.960 44 H 0.144 0.856 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.113 0.887 49 H 0.056 0.944 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 -25.885 7.504 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.005 4.005 3 C -0.266 4.266 4 C 0.385 3.615 5 O -0.446 6.446 6 N -0.317 5.317 7 C 0.006 3.994 8 C -0.178 4.178 9 C 0.063 3.937 10 H 0.066 0.934 11 N -0.365 5.365 12 C -0.359 4.359 13 H 0.093 0.907 14 C -0.268 4.268 15 N -0.622 5.622 16 Si 0.797 3.203 17 H -0.218 1.218 18 H -0.228 1.228 19 H -0.196 1.196 20 C -0.116 4.116 21 H 0.100 0.900 22 C -0.186 4.186 23 C -0.040 4.040 24 N -0.096 5.096 25 N -0.060 5.060 26 N -0.129 5.129 27 C 0.032 3.968 28 C -0.219 4.219 29 C -0.217 4.217 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.207 0.793 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.166 0.834 43 H 0.058 0.942 44 H 0.162 0.838 45 H 0.132 0.868 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.132 0.868 49 H 0.075 0.925 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.502 -26.038 7.509 29.439 hybrid contribution -0.101 1.723 -0.803 1.904 sum -11.603 -24.315 6.706 27.764 Atomic orbital electron populations 1.20856 0.82285 1.06275 1.05830 1.22289 0.97440 0.85535 0.95233 1.21159 0.89657 0.95165 1.20630 1.17064 0.84957 0.83243 0.76242 1.90680 1.16702 1.83867 1.53360 1.47933 1.07432 1.06426 1.69909 1.21383 0.99420 0.79914 0.98727 1.22376 0.98459 1.00383 0.96624 1.20455 0.91618 0.91876 0.89737 0.93403 1.42593 1.76507 1.06502 1.10904 1.19589 1.32986 0.86688 0.96602 0.90721 1.25435 1.03698 1.01609 0.96098 1.69824 1.53641 1.36195 1.02491 0.85232 0.77818 0.81135 0.76140 1.21782 1.22820 1.19580 1.21509 0.96742 0.95381 0.97996 0.90015 1.21561 0.94035 1.01264 1.01698 1.22732 0.78170 1.05752 0.97365 1.74015 1.19189 1.04376 1.12004 1.81854 0.98336 1.03068 1.22791 1.50957 1.05019 1.08501 1.48402 1.22234 1.02523 0.72958 0.99050 1.22183 1.02086 1.02550 0.95054 1.22161 1.02025 1.02485 0.94979 0.87444 0.88810 0.86982 0.93431 0.89784 0.91732 0.91050 0.79343 0.94402 0.92289 0.91559 0.94318 0.83406 0.94199 0.83840 0.86771 0.92540 0.92437 0.86845 0.92508 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.47 71.23 0.67 -0.65 16 2 C 0.13 2.91 7.02 41.72 0.29 3.21 16 3 C -0.13 -3.82 6.77 40.82 0.28 -3.55 16 4 C 0.60 20.98 7.69 86.69 0.67 21.65 16 5 O -0.57 -20.79 14.13 -3.99 -0.06 -20.85 16 6 N -0.59 -21.80 2.98 -823.53 -2.45 -24.25 16 7 C 0.13 4.98 6.16 86.36 0.53 5.51 16 8 C -0.14 -5.09 5.78 30.67 0.18 -4.91 16 9 C 0.17 6.91 2.53 45.02 0.11 7.02 16 10 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 11 N -0.72 -36.20 3.64 -322.81 -1.18 -37.37 16 12 C -0.23 -12.50 9.93 84.03 0.83 -11.67 16 13 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 14 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 15 N -0.97 -60.37 13.06 21.65 0.28 -60.08 16 16 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 18 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 C -0.10 -3.38 2.66 -10.86 -0.03 -3.41 16 21 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 22 C -0.13 -4.37 9.05 71.98 0.65 -3.72 16 23 C 0.08 3.08 5.28 86.21 0.45 3.53 16 24 N -0.22 -6.99 8.64 -50.00 -0.43 -7.43 16 25 N -0.08 -2.19 13.67 37.02 0.51 -1.69 16 26 N -0.34 -6.46 3.28 -313.39 -1.03 -7.49 16 27 C 0.13 1.15 3.68 44.99 0.17 1.32 16 28 C -0.16 -1.29 9.47 71.98 0.68 -0.61 16 29 C -0.16 -1.16 9.47 71.98 0.68 -0.48 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.84 6.33 -2.38 -0.02 1.82 16 32 H 0.11 0.67 7.19 -2.39 -0.02 0.66 16 33 H 0.05 2.17 7.74 -2.39 -0.02 2.16 16 34 H 0.08 3.14 7.03 -2.39 -0.02 3.12 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.37 20.40 5.94 -92.71 -0.55 19.85 16 38 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.56 7.54 -2.38 -0.02 1.55 16 42 H 0.15 5.20 3.61 -104.61 -0.38 4.82 16 43 H 0.04 1.72 6.64 -2.39 -0.02 1.71 16 44 H 0.14 0.31 6.79 -2.38 -0.02 0.30 16 45 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -73.30 391.44 4.34 -68.96 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.03 Total: 31.76 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.64 Total: 9.30 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -4.30 Total: -138.31 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -73.30 4.34 -68.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036240926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.401 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds