Wall clock time and date at job start Tue Mar 31 2020 18:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36606 * 126.57736 * 2 1 4 4 C 1.47520 * 125.77039 * 359.97389 * 3 2 1 5 5 O 1.21591 * 120.00081 * 353.86379 * 4 3 2 6 6 N 1.34782 * 119.99645 * 173.86454 * 4 3 2 7 7 C 1.46920 * 120.63216 * 354.15181 * 6 4 3 8 8 C 1.53192 * 108.77580 * 126.41495 * 7 6 4 9 9 C 1.53041 * 109.31025 * 54.63634 * 8 7 6 10 10 H 1.08995 * 109.46346 * 58.64630 * 9 8 7 11 11 N 1.46498 * 109.45744 * 178.61524 * 9 8 7 12 12 C 1.36939 * 120.00214 * 275.02499 * 11 9 8 13 13 H 1.07999 * 119.99637 * 0.02562 * 12 11 9 14 14 C 1.38812 * 119.99969 * 180.02562 * 12 11 9 15 15 N 1.31623 * 119.99615 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00088 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47250 * 89.99994 * 16 14 12 18 18 H 1.48497 * 109.47467 * 329.99790 * 16 14 12 19 19 H 1.48507 * 109.47061 * 209.99821 * 16 14 12 20 20 C 1.53043 * 109.52564 * 298.62690 * 9 8 7 21 21 C 1.46927 * 120.62879 * 174.17688 * 6 4 3 22 22 H 1.08998 * 109.58353 * 353.51878 * 21 6 4 23 23 C 1.53004 * 109.58241 * 113.79569 * 21 6 4 24 24 N 1.34406 * 108.45497 * 180.24009 * 3 2 1 25 25 N 1.28759 * 109.52264 * 359.58179 * 24 3 2 26 26 N 1.34815 * 126.58480 * 179.97438 * 2 1 3 27 27 C 1.46499 * 126.58962 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47063 * 120.00196 * 27 26 2 29 29 C 1.52996 * 109.47223 * 240.00002 * 27 26 2 30 30 H 1.09008 * 109.46936 * 90.02583 * 1 2 3 31 31 H 1.08997 * 109.47208 * 210.02361 * 1 2 3 32 32 H 1.08999 * 109.47449 * 330.03046 * 1 2 3 33 33 H 1.09006 * 109.58646 * 6.63019 * 7 6 4 34 34 H 1.08991 * 109.70841 * 246.27649 * 7 6 4 35 35 H 1.08999 * 109.49892 * 294.68261 * 8 7 6 36 36 H 1.09005 * 109.49928 * 174.58806 * 8 7 6 37 37 H 0.97006 * 119.99964 * 95.03147 * 11 9 8 38 38 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.49321 * 181.32688 * 20 9 8 40 40 H 1.08998 * 109.50009 * 301.42260 * 20 9 8 41 41 H 1.08999 * 109.47200 * 60.00469 * 23 21 6 42 42 H 1.09005 * 109.46903 * 179.97438 * 23 21 6 43 43 H 1.08998 * 109.47367 * 299.99882 * 23 21 6 44 44 H 1.09004 * 109.47505 * 0.02562 * 27 26 2 45 45 H 1.08994 * 109.47243 * 59.99758 * 28 27 26 46 46 H 1.09001 * 109.47120 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46841 * 299.99698 * 28 27 26 48 48 H 1.09004 * 109.46896 * 300.00392 * 29 27 26 49 49 H 1.09003 * 109.47302 * 59.99873 * 29 27 26 50 50 H 1.09001 * 109.47291 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6917 2.7646 -0.1136 6 7 2.7753 3.4968 0.1243 7 6 4.1888 3.1965 0.3894 8 6 5.0482 3.8951 -0.6690 9 6 4.7154 5.3888 -0.6859 10 1 4.9002 5.8132 0.3009 11 7 5.5591 6.0655 -1.6740 12 6 6.8169 6.4830 -1.3292 13 1 7.1871 6.3130 -0.3290 14 6 7.6161 7.1248 -2.2654 15 7 8.8249 7.5265 -1.9338 16 14 6.9755 7.4195 -3.9952 17 1 6.2857 8.7334 -4.0504 18 1 6.0197 6.3429 -4.3593 19 1 8.1120 7.4166 -4.9511 20 6 3.2429 5.5806 -1.0559 21 6 2.3630 4.9015 -0.0017 22 1 1.3183 4.9495 -0.3087 23 6 2.5353 5.6091 1.3439 24 7 3.5984 0.6790 -0.0053 25 7 3.6299 -0.6082 0.0002 26 7 2.3105 -1.0825 0.0005 27 6 1.8865 -2.4848 0.0006 28 6 2.4297 -3.1820 -1.2483 29 6 2.4287 -3.1815 1.2501 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5133 33 1 4.3495 2.1196 0.3380 34 1 4.4622 3.5597 1.3800 35 1 4.8401 3.4648 -1.6486 36 1 6.1028 3.7600 -0.4284 37 1 5.2267 6.2180 -2.5724 38 1 9.3835 7.9746 -2.5881 39 1 3.0123 6.6454 -1.0908 40 1 3.0518 5.1343 -2.0318 41 1 3.5814 5.5644 1.6466 42 1 2.2294 6.6510 1.2482 43 1 1.9181 5.1164 2.0952 44 1 0.7976 -2.5352 -0.0003 45 1 3.5185 -3.1316 -1.2479 46 1 2.1138 -4.2252 -1.2485 47 1 2.0433 -2.6856 -2.1385 48 1 3.5176 -3.1311 1.2505 49 1 2.0418 -2.6849 2.1399 50 1 2.1136 -4.2250 1.2500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044807093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:35 Heat of formation + Delta-G solvation = 80.481531 kcal Electronic energy + Delta-G solvation = -30157.428390 eV Core-core repulsion = 26222.590443 eV Total energy + Delta-G solvation = -3934.837947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.53070 -39.94294 -37.58735 -36.80228 -34.63706 -33.27838 -32.63345 -31.75998 -30.86416 -29.72498 -28.04247 -27.90840 -27.31531 -24.54537 -24.19344 -23.30319 -22.67632 -21.20992 -20.59654 -20.25833 -18.57577 -17.68871 -17.16578 -16.55551 -16.35658 -15.98679 -15.01811 -14.94074 -14.84497 -14.51314 -14.01873 -13.92601 -13.80116 -13.66174 -13.54188 -13.35981 -13.25607 -12.91368 -12.82215 -12.73584 -12.65873 -12.42855 -12.21169 -12.09563 -12.01359 -11.79534 -11.58558 -11.39968 -10.99752 -10.93019 -10.80612 -10.61532 -10.45156 -10.26211 -10.10372 -9.70072 -9.60855 -9.51434 -9.29152 -8.81300 -8.38659 -7.19612 -5.71686 -3.06367 0.94891 1.61633 1.73639 3.07678 3.28642 3.42126 3.45767 3.49510 3.83644 3.95914 4.21737 4.31568 4.32214 4.50756 4.64440 4.77074 4.93171 4.94852 5.05299 5.10045 5.12705 5.16522 5.19655 5.32544 5.37252 5.38953 5.45839 5.55433 5.57397 5.63772 5.64516 5.68714 5.79495 5.82583 5.94710 6.03967 6.12425 6.21850 6.30264 6.40445 6.44670 6.53726 6.56838 6.78264 6.98881 7.11872 7.54964 7.85200 8.05318 8.24445 8.47797 9.26605 9.99584 10.19969 11.46851 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002922 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.937094 B = 9579.350152 C =10477.143860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.119 3.881 3 C -0.097 4.097 4 C 0.603 3.397 5 O -0.550 6.550 6 N -0.583 5.583 7 C 0.069 3.931 8 C -0.143 4.143 9 C 0.181 3.819 10 H 0.059 0.941 11 N -0.749 5.749 12 C -0.238 4.238 13 H 0.090 0.910 14 C 0.003 3.997 15 N -0.936 5.936 16 Si 0.884 3.116 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.292 1.292 20 C -0.137 4.137 21 C 0.143 3.857 22 H 0.096 0.904 23 C -0.161 4.161 24 N -0.197 5.197 25 N -0.065 5.065 26 N -0.356 5.356 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.360 0.640 38 H 0.258 0.742 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.232 -22.462 6.478 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.019 4.019 3 C -0.236 4.236 4 C 0.389 3.611 5 O -0.428 6.428 6 N -0.313 5.313 7 C -0.055 4.055 8 C -0.184 4.184 9 C 0.072 3.928 10 H 0.077 0.923 11 N -0.391 5.391 12 C -0.368 4.368 13 H 0.108 0.892 14 C -0.193 4.193 15 N -0.584 5.584 16 Si 0.714 3.286 17 H -0.212 1.212 18 H -0.204 1.204 19 H -0.219 1.219 20 C -0.176 4.176 21 C 0.040 3.960 22 H 0.114 0.886 23 C -0.219 4.219 24 N -0.069 5.069 25 N -0.043 5.043 26 N -0.144 5.144 27 C 0.042 3.958 28 C -0.221 4.221 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.192 0.808 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.128 -22.696 6.534 30.392 hybrid contribution -1.038 0.394 -1.382 1.773 sum -20.166 -22.302 5.152 30.506 Atomic orbital electron populations 1.20675 0.84855 1.05019 1.04603 1.21872 0.96153 0.86333 0.97493 1.21232 0.88897 0.95393 1.18114 1.16768 0.85179 0.82498 0.76608 1.90720 1.16099 1.83437 1.52570 1.48030 1.09259 1.05545 1.68500 1.22859 0.78514 1.05435 0.98650 1.22524 0.99894 0.97975 0.98038 1.20230 0.87895 0.90790 0.93887 0.92300 1.42813 1.15566 1.70260 1.10449 1.19078 0.89160 1.30015 0.98585 0.89183 1.24661 0.96082 1.00840 0.97676 1.69704 1.08862 1.45418 1.34380 0.86557 0.77843 0.78048 0.86136 1.21170 1.20373 1.21873 1.22248 0.96511 1.00672 0.98127 1.21203 0.99650 0.79287 0.95873 0.88626 1.22141 1.02877 1.00392 0.96455 1.74234 1.18493 1.03448 1.10746 1.81986 0.96351 1.03768 1.22202 1.50627 1.06315 1.07164 1.50254 1.21645 1.00398 0.75344 0.98367 1.22163 1.03378 1.00813 0.95762 1.22165 1.03386 1.00829 0.95727 0.89065 0.90923 0.87143 0.84833 0.92084 0.92583 0.90409 0.80774 0.93157 0.90496 0.92030 0.91465 0.91325 0.92793 0.87345 0.90556 0.89920 0.91691 0.90563 0.91719 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.35 36.01 0.34 -0.35 16 2 C 0.12 1.28 7.02 -81.87 -0.57 0.70 16 3 C -0.10 -1.36 6.75 -83.55 -0.56 -1.92 16 4 C 0.60 9.23 7.68 -12.47 -0.10 9.13 16 5 O -0.55 -8.85 14.24 5.29 0.08 -8.78 16 6 N -0.58 -8.92 2.68 -166.45 -0.45 -9.36 16 7 C 0.07 1.08 5.90 -3.71 -0.02 1.06 16 8 C -0.14 -2.64 5.66 -26.61 -0.15 -2.79 16 9 C 0.18 3.53 2.53 -67.89 -0.17 3.36 16 10 H 0.06 1.18 6.43 -51.93 -0.33 0.84 16 11 N -0.75 -17.97 4.92 -53.39 -0.26 -18.23 16 12 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 13 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 14 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 15 N -0.94 -29.71 13.97 55.49 0.78 -28.93 16 16 Si 0.88 22.59 27.74 -169.99 -4.71 17.88 16 17 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 19 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 20 C -0.14 -2.26 5.02 -26.61 -0.13 -2.39 16 21 C 0.14 2.11 3.19 -67.60 -0.22 1.89 16 22 H 0.10 1.41 7.04 -51.93 -0.37 1.04 16 23 C -0.16 -2.12 9.03 37.16 0.34 -1.78 16 24 N -0.20 -2.90 8.70 32.85 0.29 -2.62 16 25 N -0.06 -0.85 13.67 60.35 0.82 -0.02 16 26 N -0.36 -3.48 3.28 -50.41 -0.17 -3.65 16 27 C 0.14 0.80 3.68 -67.93 -0.25 0.55 16 28 C -0.16 -0.82 9.47 37.16 0.35 -0.47 16 29 C -0.16 -0.77 9.47 37.16 0.35 -0.42 16 30 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.31 7.18 -51.93 -0.37 -0.06 16 32 H 0.11 0.99 6.58 -51.93 -0.34 0.65 16 33 H 0.14 2.11 3.65 -123.15 -0.45 1.66 16 34 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.36 8.60 5.66 -40.82 -0.23 8.37 16 38 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.94 5.73 -51.93 -0.30 0.64 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.34 6.79 -51.93 -0.35 -0.02 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.49 389.35 -7.04 -41.53 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.22 Total: 6.67 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.05 Total: -0.35 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 1.01 Total: -62.82 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.49 -7.04 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.010 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds