Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36606 * 126.57736 * 2 1 4 4 C 1.47520 * 125.77039 * 359.97389 * 3 2 1 5 5 O 1.21591 * 120.00081 * 353.86379 * 4 3 2 6 6 N 1.34782 * 119.99645 * 173.86454 * 4 3 2 7 7 C 1.46920 * 120.63216 * 354.15181 * 6 4 3 8 8 C 1.53192 * 108.77580 * 126.41495 * 7 6 4 9 9 C 1.53041 * 109.31025 * 54.63634 * 8 7 6 10 10 H 1.08995 * 109.46346 * 58.64630 * 9 8 7 11 11 N 1.46498 * 109.45744 * 178.61524 * 9 8 7 12 12 C 1.36939 * 120.00214 * 275.02499 * 11 9 8 13 13 H 1.07999 * 119.99637 * 0.02562 * 12 11 9 14 14 C 1.38812 * 119.99969 * 180.02562 * 12 11 9 15 15 N 1.31623 * 119.99615 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00088 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47250 * 89.99994 * 16 14 12 18 18 H 1.48497 * 109.47467 * 329.99790 * 16 14 12 19 19 H 1.48507 * 109.47061 * 209.99821 * 16 14 12 20 20 C 1.53043 * 109.52564 * 298.62690 * 9 8 7 21 21 C 1.46927 * 120.62879 * 174.17688 * 6 4 3 22 22 H 1.08998 * 109.58353 * 353.51878 * 21 6 4 23 23 C 1.53004 * 109.58241 * 113.79569 * 21 6 4 24 24 N 1.34406 * 108.45497 * 180.24009 * 3 2 1 25 25 N 1.28759 * 109.52264 * 359.58179 * 24 3 2 26 26 N 1.34815 * 126.58480 * 179.97438 * 2 1 3 27 27 C 1.46499 * 126.58962 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47063 * 120.00196 * 27 26 2 29 29 C 1.52996 * 109.47223 * 240.00002 * 27 26 2 30 30 H 1.09008 * 109.46936 * 90.02583 * 1 2 3 31 31 H 1.08997 * 109.47208 * 210.02361 * 1 2 3 32 32 H 1.08999 * 109.47449 * 330.03046 * 1 2 3 33 33 H 1.09006 * 109.58646 * 6.63019 * 7 6 4 34 34 H 1.08991 * 109.70841 * 246.27649 * 7 6 4 35 35 H 1.08999 * 109.49892 * 294.68261 * 8 7 6 36 36 H 1.09005 * 109.49928 * 174.58806 * 8 7 6 37 37 H 0.97006 * 119.99964 * 95.03147 * 11 9 8 38 38 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.49321 * 181.32688 * 20 9 8 40 40 H 1.08998 * 109.50009 * 301.42260 * 20 9 8 41 41 H 1.08999 * 109.47200 * 60.00469 * 23 21 6 42 42 H 1.09005 * 109.46903 * 179.97438 * 23 21 6 43 43 H 1.08998 * 109.47367 * 299.99882 * 23 21 6 44 44 H 1.09004 * 109.47505 * 0.02562 * 27 26 2 45 45 H 1.08994 * 109.47243 * 59.99758 * 28 27 26 46 46 H 1.09001 * 109.47120 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46841 * 299.99698 * 28 27 26 48 48 H 1.09004 * 109.46896 * 300.00392 * 29 27 26 49 49 H 1.09003 * 109.47302 * 59.99873 * 29 27 26 50 50 H 1.09001 * 109.47291 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6917 2.7646 -0.1136 6 7 2.7753 3.4968 0.1243 7 6 4.1888 3.1965 0.3894 8 6 5.0482 3.8951 -0.6690 9 6 4.7154 5.3888 -0.6859 10 1 4.9002 5.8132 0.3009 11 7 5.5591 6.0655 -1.6740 12 6 6.8169 6.4830 -1.3292 13 1 7.1871 6.3130 -0.3290 14 6 7.6161 7.1248 -2.2654 15 7 8.8249 7.5265 -1.9338 16 14 6.9755 7.4195 -3.9952 17 1 6.2857 8.7334 -4.0504 18 1 6.0197 6.3429 -4.3593 19 1 8.1120 7.4166 -4.9511 20 6 3.2429 5.5806 -1.0559 21 6 2.3630 4.9015 -0.0017 22 1 1.3183 4.9495 -0.3087 23 6 2.5353 5.6091 1.3439 24 7 3.5984 0.6790 -0.0053 25 7 3.6299 -0.6082 0.0002 26 7 2.3105 -1.0825 0.0005 27 6 1.8865 -2.4848 0.0006 28 6 2.4297 -3.1820 -1.2483 29 6 2.4287 -3.1815 1.2501 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5133 33 1 4.3495 2.1196 0.3380 34 1 4.4622 3.5597 1.3800 35 1 4.8401 3.4648 -1.6486 36 1 6.1028 3.7600 -0.4284 37 1 5.2267 6.2180 -2.5724 38 1 9.3835 7.9746 -2.5881 39 1 3.0123 6.6454 -1.0908 40 1 3.0518 5.1343 -2.0318 41 1 3.5814 5.5644 1.6466 42 1 2.2294 6.6510 1.2482 43 1 1.9181 5.1164 2.0952 44 1 0.7976 -2.5352 -0.0003 45 1 3.5185 -3.1316 -1.2479 46 1 2.1138 -4.2252 -1.2485 47 1 2.0433 -2.6856 -2.1385 48 1 3.5176 -3.1311 1.2505 49 1 2.0418 -2.6849 2.1399 50 1 2.1136 -4.2250 1.2500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044807093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = 57.451792 kcal Electronic energy + Delta-G solvation = -30158.427035 eV Core-core repulsion = 26222.590443 eV Total energy + Delta-G solvation = -3935.836592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.42913 -41.17018 -38.93634 -37.43100 -36.36122 -34.13926 -33.92529 -33.54113 -31.78505 -31.43812 -28.95578 -28.53194 -28.27968 -25.97213 -25.17397 -24.52632 -24.17381 -22.68051 -21.47070 -21.31360 -20.16472 -19.15794 -18.37294 -17.49238 -17.24251 -17.14450 -16.75210 -16.00565 -15.84658 -15.54391 -15.49857 -15.15285 -15.04503 -14.79945 -14.59611 -14.39135 -14.11204 -14.01941 -13.99980 -13.84833 -13.48790 -13.25698 -13.19929 -13.17780 -12.96903 -12.89135 -12.72480 -12.53404 -12.42693 -12.29738 -12.14118 -12.04475 -12.01046 -11.80520 -11.45348 -11.15712 -11.15158 -11.01676 -10.70745 -10.24315 -9.61866 -9.28340 -8.00661 -5.33342 0.11842 0.56188 1.04668 1.37591 1.40243 1.47372 1.93384 2.17658 2.49165 3.08704 3.26096 3.30825 3.49133 3.53442 3.66284 3.80617 3.81388 3.97376 4.08125 4.11302 4.12476 4.25690 4.27095 4.40564 4.52812 4.56448 4.61282 4.62068 4.63346 4.70854 4.72149 4.75280 4.81948 4.82991 5.01136 5.02157 5.06073 5.09295 5.18122 5.20342 5.25034 5.30496 5.38754 5.51266 5.56393 5.72526 5.80076 6.23628 6.34987 6.84606 7.09211 7.11203 7.85728 8.05065 9.21034 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002922 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.937094 B = 9579.350152 C =10477.143860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.130 4.130 4 C 0.603 3.397 5 O -0.559 6.559 6 N -0.587 5.587 7 C 0.081 3.919 8 C -0.133 4.133 9 C 0.177 3.823 10 H 0.053 0.947 11 N -0.752 5.752 12 C -0.222 4.222 13 H 0.059 0.941 14 C -0.065 4.065 15 N -0.985 5.985 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.258 1.258 19 H -0.298 1.298 20 C -0.127 4.127 21 C 0.146 3.854 22 H 0.103 0.897 23 C -0.155 4.155 24 N -0.225 5.225 25 N -0.087 5.087 26 N -0.343 5.343 27 C 0.132 3.868 28 C -0.161 4.161 29 C -0.160 4.160 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.363 0.637 38 H 0.257 0.743 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.145 0.855 45 H 0.054 0.946 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.781 -24.516 6.102 34.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 C -0.269 4.269 4 C 0.390 3.610 5 O -0.438 6.438 6 N -0.318 5.318 7 C -0.043 4.043 8 C -0.174 4.174 9 C 0.069 3.931 10 H 0.071 0.929 11 N -0.394 5.394 12 C -0.354 4.354 13 H 0.077 0.923 14 C -0.256 4.256 15 N -0.636 5.636 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.183 1.183 19 H -0.225 1.225 20 C -0.165 4.165 21 C 0.043 3.957 22 H 0.121 0.879 23 C -0.213 4.213 24 N -0.097 5.097 25 N -0.066 5.066 26 N -0.130 5.130 27 C 0.033 3.967 28 C -0.218 4.218 29 C -0.218 4.218 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.163 0.837 45 H 0.073 0.927 46 H 0.132 0.868 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.725 -24.805 6.176 34.203 hybrid contribution 0.005 0.869 -1.171 1.458 sum -22.720 -23.936 5.005 33.380 Atomic orbital electron populations 1.20820 0.82141 1.06237 1.05689 1.22354 0.97500 0.85570 0.95205 1.21284 0.89473 0.95573 1.20583 1.16951 0.84983 0.83029 0.76007 1.90703 1.16292 1.83802 1.53052 1.48042 1.08900 1.05954 1.68887 1.22693 0.78512 1.05437 0.97680 1.22329 0.99115 0.97457 0.98476 1.20428 0.89299 0.90709 0.92626 0.92855 1.42839 1.14559 1.70557 1.11455 1.19023 0.90626 1.28550 0.97152 0.92346 1.25455 0.96396 1.01557 1.02229 1.69882 1.10558 1.47245 1.35876 0.85429 0.77319 0.78656 0.80466 1.20246 1.18292 1.22469 1.22139 0.94239 1.01589 0.98583 1.21206 0.99335 0.79052 0.96066 0.87935 1.22098 1.02305 1.01205 0.95701 1.74109 1.19404 1.04340 1.11804 1.81889 0.98410 1.03218 1.23047 1.50973 1.05062 1.08573 1.48393 1.22215 1.02520 0.73040 0.98926 1.22171 1.01949 1.02566 0.95149 1.22171 1.02001 1.02529 0.95056 0.87798 0.87033 0.88571 0.84413 0.91499 0.93639 0.92768 0.80438 0.93458 0.89529 0.92366 0.92669 0.89887 0.91872 0.83712 0.92720 0.86816 0.92405 0.92671 0.92060 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.35 71.24 0.67 -0.37 16 2 C 0.13 2.59 7.02 41.72 0.29 2.89 16 3 C -0.13 -3.52 6.75 40.82 0.28 -3.25 16 4 C 0.60 17.94 7.68 86.69 0.67 18.60 16 5 O -0.56 -17.21 14.24 -4.00 -0.06 -17.26 16 6 N -0.59 -17.63 2.68 -798.79 -2.14 -19.77 16 7 C 0.08 2.56 5.90 86.36 0.51 3.07 16 8 C -0.13 -5.02 5.66 30.67 0.17 -4.85 16 9 C 0.18 6.94 2.53 45.02 0.11 7.05 16 10 H 0.05 2.17 6.43 -2.39 -0.02 2.15 16 11 N -0.75 -36.14 4.92 -322.82 -1.59 -37.73 16 12 C -0.22 -12.91 10.41 84.03 0.87 -12.04 16 13 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 14 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 15 N -0.98 -64.38 13.97 21.65 0.30 -64.08 16 16 Si 0.95 47.02 27.74 68.60 1.90 48.92 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 18 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 19 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 20 C -0.13 -4.05 5.02 30.67 0.15 -3.89 16 21 C 0.15 4.12 3.19 44.97 0.14 4.27 16 22 H 0.10 2.82 7.04 -2.39 -0.02 2.80 16 23 C -0.16 -3.87 9.03 71.98 0.65 -3.22 16 24 N -0.23 -6.67 8.70 -49.99 -0.43 -7.11 16 25 N -0.09 -2.28 13.67 37.02 0.51 -1.77 16 26 N -0.34 -6.10 3.28 -313.39 -1.03 -7.13 16 27 C 0.13 1.06 3.68 44.99 0.17 1.23 16 28 C -0.16 -1.24 9.47 71.98 0.68 -0.56 16 29 C -0.16 -1.09 9.47 71.98 0.68 -0.41 16 30 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.11 0.40 7.18 -2.39 -0.02 0.38 16 32 H 0.10 1.49 6.58 -2.39 -0.02 1.47 16 33 H 0.14 4.45 3.65 -94.55 -0.34 4.11 16 34 H 0.07 2.03 7.51 -2.39 -0.02 2.01 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.36 16.95 5.66 -92.70 -0.52 16.43 16 38 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.51 5.73 -2.39 -0.01 1.49 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.15 0.17 6.79 -2.39 -0.02 0.15 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -77.50 389.35 4.01 -73.49 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.03 Total: 27.39 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.51 Total: 5.05 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -4.39 Total: -137.59 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.26 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.90 Total: 48.92 kcal Total: -77.50 4.01 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.940 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds