Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36595 * 126.58213 * 2 1 4 4 C 1.47529 * 125.76927 * 359.94266 * 3 2 1 5 5 O 1.21592 * 120.00028 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00168 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00279 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.46174 * 60.02081 * 7 6 4 9 9 C 1.53046 * 109.45554 * 300.06376 * 7 6 4 10 10 C 1.53194 * 109.31157 * 301.34450 * 9 7 6 11 11 N 1.46928 * 108.77371 * 305.36167 * 10 9 7 12 12 C 1.36932 * 120.63166 * 233.62649 * 11 10 9 13 13 H 1.08005 * 120.00129 * 27.67732 * 12 11 10 14 14 C 1.38814 * 120.00257 * 207.66762 * 12 11 10 15 15 N 1.31623 * 119.99921 * 17.36944 * 14 12 11 16 16 Si 1.86797 * 120.00240 * 197.36523 * 14 12 11 17 17 H 1.48505 * 109.47043 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.47506 * 210.00444 * 16 14 12 19 19 H 1.48499 * 109.47212 * 330.00470 * 16 14 12 20 20 C 1.46923 * 118.73723 * 53.61756 * 11 10 9 21 21 C 1.53042 * 109.46189 * 179.97438 * 7 6 4 22 22 N 1.34403 * 108.46395 * 179.97438 * 3 2 1 23 23 N 1.28760 * 109.52051 * 359.97438 * 22 3 2 24 24 N 1.34815 * 126.58350 * 179.97438 * 2 1 3 25 25 C 1.46507 * 126.59058 * 0.02562 * 24 2 1 26 26 C 1.53005 * 109.46837 * 119.99728 * 25 24 2 27 27 C 1.52994 * 109.47112 * 239.99854 * 25 24 2 28 28 H 1.09001 * 109.46893 * 90.02586 * 1 2 3 29 29 H 1.08999 * 109.47144 * 210.02821 * 1 2 3 30 30 H 1.09000 * 109.46979 * 330.02622 * 1 2 3 31 31 H 0.97004 * 120.00088 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.46929 * 60.00611 * 8 7 6 33 33 H 1.09000 * 109.47331 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47218 * 300.00792 * 8 7 6 35 35 H 1.08996 * 109.49625 * 61.29602 * 9 7 6 36 36 H 1.09000 * 109.49574 * 181.39483 * 9 7 6 37 37 H 1.09007 * 109.58303 * 185.58152 * 10 9 7 38 38 H 1.08994 * 109.58790 * 65.15347 * 10 9 7 39 39 H 0.96992 * 119.99914 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.58640 * 186.60030 * 20 11 10 41 41 H 1.09003 * 109.71177 * 66.24112 * 20 11 10 42 42 H 1.09000 * 109.49481 * 178.60069 * 21 7 6 43 43 H 1.08998 * 109.49618 * 298.66669 * 21 7 6 44 44 H 1.09001 * 109.46922 * 0.02562 * 25 24 2 45 45 H 1.09005 * 109.46428 * 60.00275 * 26 25 24 46 46 H 1.08994 * 109.46967 * 179.97438 * 26 25 24 47 47 H 1.08992 * 109.47328 * 300.00500 * 26 25 24 48 48 H 1.09001 * 109.46867 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47250 * 299.99967 * 27 25 24 50 50 H 1.08995 * 109.47092 * 60.00158 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0012 5 8 0.6860 2.7628 -0.0018 6 7 2.7816 3.4987 -0.0016 7 6 2.3375 4.8948 -0.0022 8 6 1.4960 5.1626 1.2472 9 6 1.4941 5.1609 -1.2513 10 6 2.3287 4.8588 -2.4999 11 7 3.5739 5.6360 -2.4358 12 6 3.9426 6.4498 -3.4735 13 1 3.1887 6.8833 -4.1140 14 6 5.2853 6.7180 -3.7021 15 7 6.2102 5.9492 -3.1674 16 14 5.7794 8.1697 -4.7686 17 1 5.9391 9.3769 -3.9185 18 1 7.0650 7.8696 -5.4486 19 1 4.7270 8.4170 -5.7867 20 6 4.4159 5.5235 -1.2370 21 6 3.5580 5.8181 -0.0019 22 7 3.5984 0.6789 0.0006 23 7 3.6299 -0.6083 0.0015 24 7 2.3104 -1.0826 0.0005 25 6 1.8864 -2.4849 0.0006 26 6 2.4295 -3.1820 -1.2484 27 6 2.4287 -3.1816 1.2501 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 3.7292 3.2913 -0.0007 32 1 2.0962 4.9726 2.1370 33 1 1.1651 6.2011 1.2467 34 1 0.6270 4.5046 1.2478 35 1 0.6130 4.5194 -1.2387 36 1 1.1840 6.2057 -1.2650 37 1 1.7678 5.1402 -3.3912 38 1 2.5633 3.7949 -2.5340 39 1 7.1484 6.1363 -3.3275 40 1 5.2322 6.2435 -1.2950 41 1 4.8228 4.5147 -1.1669 42 1 3.2283 6.8568 -0.0275 43 1 4.1451 5.6448 0.9000 44 1 0.7975 -2.5352 -0.0003 45 1 3.5184 -3.1317 -1.2479 46 1 2.1144 -4.2254 -1.2481 47 1 2.0433 -2.6856 -2.1386 48 1 2.1135 -4.2251 1.2499 49 1 3.5175 -3.1313 1.2505 50 1 2.0417 -2.6850 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045601476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = 72.783479 kcal Electronic energy + Delta-G solvation = -30573.947157 eV Core-core repulsion = 26638.775397 eV Total energy + Delta-G solvation = -3935.171760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.26868 -39.82340 -37.26444 -36.58830 -34.36844 -33.07494 -32.08279 -31.12876 -30.37962 -29.79738 -27.80083 -27.77522 -27.34014 -24.09146 -24.05467 -23.28714 -22.19337 -20.94120 -20.46457 -19.96624 -18.48697 -17.72616 -16.85833 -16.33252 -16.21079 -15.01294 -14.85458 -14.75357 -14.54392 -14.22489 -13.95386 -13.77062 -13.58862 -13.37026 -13.28759 -13.19139 -13.04697 -12.97639 -12.71690 -12.59998 -12.31524 -12.02089 -11.97495 -11.71743 -11.60634 -11.53558 -11.24122 -11.13837 -11.04140 -10.85940 -10.67723 -10.27894 -10.23591 -10.20519 -9.80087 -9.77199 -9.54793 -9.12224 -9.07886 -8.50834 -8.37601 -6.58223 -5.71609 -3.13008 1.13935 1.88447 1.92096 3.42282 3.49134 3.50419 3.50873 3.60669 3.99317 4.15870 4.33963 4.44795 4.54298 4.56446 4.78523 4.93499 5.04613 5.13127 5.22602 5.25796 5.33193 5.37697 5.43787 5.50104 5.53702 5.60955 5.66295 5.68995 5.70366 5.78631 5.97041 6.10246 6.13541 6.27629 6.38671 6.41235 6.42867 6.48428 6.63199 6.75150 6.79787 6.90655 7.05803 7.16687 7.39522 7.69761 7.85284 7.89741 8.13765 8.52250 8.58926 9.28766 9.92658 10.50115 11.36695 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003131 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.270093 B = 8941.298248 C = 9848.315334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.117 3.883 3 C -0.101 4.101 4 C 0.606 3.394 5 O -0.544 6.544 6 N -0.692 5.692 7 C 0.184 3.816 8 C -0.160 4.160 9 C -0.142 4.142 10 C 0.150 3.850 11 N -0.591 5.591 12 C -0.249 4.249 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.902 5.902 16 Si 0.901 3.099 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.280 1.280 20 C 0.171 3.829 21 C -0.146 4.146 22 N -0.199 5.199 23 N -0.067 5.067 24 N -0.361 5.361 25 C 0.145 3.855 26 C -0.163 4.163 27 C -0.162 4.162 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.408 0.592 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.015 0.985 39 H 0.253 0.747 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 -17.346 10.465 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.020 4.020 3 C -0.240 4.240 4 C 0.391 3.609 5 O -0.422 6.422 6 N -0.341 5.341 7 C 0.099 3.901 8 C -0.218 4.218 9 C -0.182 4.182 10 C 0.024 3.976 11 N -0.313 5.313 12 C -0.379 4.379 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.215 1.215 18 H -0.219 1.219 19 H -0.205 1.205 20 C 0.045 3.955 21 C -0.186 4.186 22 N -0.072 5.072 23 N -0.047 5.047 24 N -0.148 5.148 25 C 0.043 3.957 26 C -0.221 4.221 27 C -0.220 4.220 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.244 0.756 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.833 -17.548 10.416 23.104 hybrid contribution -0.039 0.668 -0.606 0.903 sum -10.872 -16.880 9.810 22.347 Atomic orbital electron populations 1.20691 0.84950 1.05032 1.04551 1.21885 0.96118 0.86431 0.97616 1.21390 0.88930 0.95748 1.17935 1.16655 0.85689 0.82271 0.76322 1.90656 1.16022 1.83387 1.52127 1.45967 1.10111 1.05642 1.72429 1.20318 0.95189 0.79476 0.95130 1.22228 1.00908 1.01955 0.96724 1.22394 0.98832 1.01445 0.95486 1.20831 0.88191 0.93974 0.94629 1.44036 1.21596 1.49907 1.15799 1.19202 0.90712 1.20381 1.07609 0.91752 1.25024 0.96359 0.99022 0.99355 1.70035 0.99732 1.36866 1.48037 0.86303 0.77672 0.82829 0.80052 1.21520 1.21874 1.20541 1.20756 0.92576 0.99669 0.82501 1.22531 0.96336 0.98898 1.00785 1.74674 1.19108 1.03999 1.09427 1.81930 0.96153 1.03425 1.23148 1.50623 1.06441 1.07062 1.50646 1.21598 1.00326 0.75534 0.98220 1.22158 1.03343 1.00708 0.95891 1.22155 1.03315 1.00736 0.95822 0.89173 0.91157 0.86873 0.75571 0.93349 0.92198 0.90850 0.90806 0.91806 0.93210 0.96757 0.93715 0.89287 0.96377 0.90981 0.92690 0.87446 0.90625 0.90038 0.91634 0.90039 0.90651 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.41 36.00 0.34 -0.51 16 2 C 0.12 1.47 7.02 -81.88 -0.57 0.90 16 3 C -0.10 -1.60 6.99 -83.55 -0.58 -2.18 16 4 C 0.61 10.32 7.24 -12.48 -0.09 10.23 16 5 O -0.54 -9.41 10.93 5.29 0.06 -9.36 16 6 N -0.69 -12.18 4.09 -48.60 -0.20 -12.38 16 7 C 0.18 3.25 0.66 -131.78 -0.09 3.17 16 8 C -0.16 -2.47 8.40 37.15 0.31 -2.15 16 9 C -0.14 -2.71 4.67 -26.61 -0.12 -2.83 16 10 C 0.15 3.37 6.26 -3.71 -0.02 3.35 16 11 N -0.59 -15.07 2.99 -172.28 -0.52 -15.59 16 12 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 13 H 0.06 1.78 7.89 -52.48 -0.41 1.37 16 14 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 15 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 16 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.17 4.06 5.04 -3.69 -0.02 4.05 16 21 C -0.15 -2.77 4.96 -26.58 -0.13 -2.90 16 22 N -0.20 -3.38 12.04 32.85 0.40 -2.99 16 23 N -0.07 -1.01 13.67 60.35 0.82 -0.19 16 24 N -0.36 -4.16 3.28 -50.40 -0.17 -4.32 16 25 C 0.14 1.02 3.68 -67.93 -0.25 0.77 16 26 C -0.16 -1.06 9.47 37.16 0.35 -0.71 16 27 C -0.16 -0.96 9.47 37.15 0.35 -0.61 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.41 7.18 -51.93 -0.37 0.04 16 30 H 0.11 1.19 6.43 -51.93 -0.33 0.86 16 31 H 0.41 7.45 6.96 -40.82 -0.28 7.16 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 35 H 0.07 1.39 6.20 -51.93 -0.32 1.07 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.11 7.93 -51.92 -0.41 0.70 16 38 H 0.01 0.34 7.74 -51.93 -0.40 -0.06 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 41 H 0.02 0.45 6.94 -51.93 -0.36 0.09 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.11 0.49 6.79 -51.93 -0.35 0.14 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -32.63 389.11 -7.00 -39.63 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.09 Total: 4.78 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.76 Total: 3.38 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.96 Total: -61.33 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.36 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.63 -7.00 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045601476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.411 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds