Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36595 * 126.58213 * 2 1 4 4 C 1.47529 * 125.76927 * 359.94266 * 3 2 1 5 5 O 1.21592 * 120.00028 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00168 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00279 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.46174 * 60.02081 * 7 6 4 9 9 C 1.53046 * 109.45554 * 300.06376 * 7 6 4 10 10 C 1.53194 * 109.31157 * 301.34450 * 9 7 6 11 11 N 1.46928 * 108.77371 * 305.36167 * 10 9 7 12 12 C 1.36932 * 120.63166 * 233.62649 * 11 10 9 13 13 H 1.08005 * 120.00129 * 27.67732 * 12 11 10 14 14 C 1.38814 * 120.00257 * 207.66762 * 12 11 10 15 15 N 1.31623 * 119.99921 * 17.36944 * 14 12 11 16 16 Si 1.86797 * 120.00240 * 197.36523 * 14 12 11 17 17 H 1.48505 * 109.47043 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.47506 * 210.00444 * 16 14 12 19 19 H 1.48499 * 109.47212 * 330.00470 * 16 14 12 20 20 C 1.46923 * 118.73723 * 53.61756 * 11 10 9 21 21 C 1.53042 * 109.46189 * 179.97438 * 7 6 4 22 22 N 1.34403 * 108.46395 * 179.97438 * 3 2 1 23 23 N 1.28760 * 109.52051 * 359.97438 * 22 3 2 24 24 N 1.34815 * 126.58350 * 179.97438 * 2 1 3 25 25 C 1.46507 * 126.59058 * 0.02562 * 24 2 1 26 26 C 1.53005 * 109.46837 * 119.99728 * 25 24 2 27 27 C 1.52994 * 109.47112 * 239.99854 * 25 24 2 28 28 H 1.09001 * 109.46893 * 90.02586 * 1 2 3 29 29 H 1.08999 * 109.47144 * 210.02821 * 1 2 3 30 30 H 1.09000 * 109.46979 * 330.02622 * 1 2 3 31 31 H 0.97004 * 120.00088 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.46929 * 60.00611 * 8 7 6 33 33 H 1.09000 * 109.47331 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47218 * 300.00792 * 8 7 6 35 35 H 1.08996 * 109.49625 * 61.29602 * 9 7 6 36 36 H 1.09000 * 109.49574 * 181.39483 * 9 7 6 37 37 H 1.09007 * 109.58303 * 185.58152 * 10 9 7 38 38 H 1.08994 * 109.58790 * 65.15347 * 10 9 7 39 39 H 0.96992 * 119.99914 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.58640 * 186.60030 * 20 11 10 41 41 H 1.09003 * 109.71177 * 66.24112 * 20 11 10 42 42 H 1.09000 * 109.49481 * 178.60069 * 21 7 6 43 43 H 1.08998 * 109.49618 * 298.66669 * 21 7 6 44 44 H 1.09001 * 109.46922 * 0.02562 * 25 24 2 45 45 H 1.09005 * 109.46428 * 60.00275 * 26 25 24 46 46 H 1.08994 * 109.46967 * 179.97438 * 26 25 24 47 47 H 1.08992 * 109.47328 * 300.00500 * 26 25 24 48 48 H 1.09001 * 109.46867 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47250 * 299.99967 * 27 25 24 50 50 H 1.08995 * 109.47092 * 60.00158 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0012 5 8 0.6860 2.7628 -0.0018 6 7 2.7816 3.4987 -0.0016 7 6 2.3375 4.8948 -0.0022 8 6 1.4960 5.1626 1.2472 9 6 1.4941 5.1609 -1.2513 10 6 2.3287 4.8588 -2.4999 11 7 3.5739 5.6360 -2.4358 12 6 3.9426 6.4498 -3.4735 13 1 3.1887 6.8833 -4.1140 14 6 5.2853 6.7180 -3.7021 15 7 6.2102 5.9492 -3.1674 16 14 5.7794 8.1697 -4.7686 17 1 5.9391 9.3769 -3.9185 18 1 7.0650 7.8696 -5.4486 19 1 4.7270 8.4170 -5.7867 20 6 4.4159 5.5235 -1.2370 21 6 3.5580 5.8181 -0.0019 22 7 3.5984 0.6789 0.0006 23 7 3.6299 -0.6083 0.0015 24 7 2.3104 -1.0826 0.0005 25 6 1.8864 -2.4849 0.0006 26 6 2.4295 -3.1820 -1.2484 27 6 2.4287 -3.1816 1.2501 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 3.7292 3.2913 -0.0007 32 1 2.0962 4.9726 2.1370 33 1 1.1651 6.2011 1.2467 34 1 0.6270 4.5046 1.2478 35 1 0.6130 4.5194 -1.2387 36 1 1.1840 6.2057 -1.2650 37 1 1.7678 5.1402 -3.3912 38 1 2.5633 3.7949 -2.5340 39 1 7.1484 6.1363 -3.3275 40 1 5.2322 6.2435 -1.2950 41 1 4.8228 4.5147 -1.1669 42 1 3.2283 6.8568 -0.0275 43 1 4.1451 5.6448 0.9000 44 1 0.7975 -2.5352 -0.0003 45 1 3.5184 -3.1317 -1.2479 46 1 2.1144 -4.2254 -1.2481 47 1 2.0433 -2.6856 -2.1386 48 1 2.1135 -4.2251 1.2499 49 1 3.5175 -3.1313 1.2505 50 1 2.0417 -2.6850 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045601476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = 51.508059 kcal Electronic energy + Delta-G solvation = -30574.869728 eV Core-core repulsion = 26638.775397 eV Total energy + Delta-G solvation = -3936.094331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.31161 -41.23651 -38.79560 -37.35455 -36.11476 -34.00744 -33.68785 -32.68179 -31.68866 -31.39214 -29.06938 -28.69422 -28.28455 -25.92954 -25.02992 -24.43841 -23.92226 -22.58029 -21.50422 -21.14664 -19.99712 -18.92157 -18.54998 -17.38735 -17.22327 -16.83970 -16.36966 -15.89758 -15.68259 -15.49823 -15.25549 -15.23038 -14.98859 -14.81635 -14.56405 -14.23505 -14.02858 -13.96098 -13.94212 -13.29772 -13.22865 -13.20607 -13.06685 -13.01642 -12.90751 -12.84199 -12.59658 -12.53945 -12.50976 -12.36846 -12.15442 -11.98386 -11.91269 -11.74981 -11.37524 -11.29281 -11.12563 -10.60601 -10.52117 -10.20288 -9.84614 -8.65943 -7.85738 -5.30933 0.15776 0.67516 1.09420 1.47056 1.48167 1.57202 2.22485 2.34801 2.52093 3.20853 3.28018 3.33066 3.57667 3.70643 3.74229 3.80986 3.91787 3.98311 4.06259 4.14076 4.16949 4.49716 4.54985 4.61917 4.63968 4.66487 4.67643 4.73830 4.75238 4.76157 4.81028 4.87398 4.92943 4.93636 5.00218 5.14347 5.17387 5.20115 5.22786 5.23957 5.32537 5.40014 5.49035 5.60686 5.64577 5.70469 5.78431 6.39818 6.57365 6.95760 7.16129 7.25695 7.86974 8.39822 9.20117 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003131 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.270093 B = 8941.298248 C = 9848.315334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.130 3.870 3 C -0.134 4.134 4 C 0.607 3.393 5 O -0.549 6.549 6 N -0.698 5.698 7 C 0.185 3.815 8 C -0.149 4.149 9 C -0.128 4.128 10 C 0.152 3.848 11 N -0.606 5.606 12 C -0.263 4.263 13 H 0.064 0.936 14 C -0.050 4.050 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.283 1.283 18 H -0.296 1.296 19 H -0.271 1.271 20 C 0.180 3.820 21 C -0.132 4.132 22 N -0.234 5.234 23 N -0.091 5.091 24 N -0.346 5.346 25 C 0.131 3.869 26 C -0.161 4.161 27 C -0.158 4.158 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.402 0.598 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.045 0.955 38 H -0.003 1.003 39 H 0.249 0.751 40 H 0.056 0.944 41 H -0.003 1.003 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.055 0.945 48 H 0.114 0.886 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.132 -18.426 11.358 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.274 4.274 4 C 0.392 3.608 5 O -0.428 6.428 6 N -0.348 5.348 7 C 0.100 3.900 8 C -0.207 4.207 9 C -0.168 4.168 10 C 0.027 3.973 11 N -0.329 5.329 12 C -0.393 4.393 13 H 0.082 0.918 14 C -0.245 4.245 15 N -0.579 5.579 16 Si 0.796 3.204 17 H -0.209 1.209 18 H -0.223 1.223 19 H -0.196 1.196 20 C 0.054 3.946 21 C -0.171 4.171 22 N -0.106 5.106 23 N -0.070 5.070 24 N -0.133 5.133 25 C 0.032 3.968 26 C -0.218 4.218 27 C -0.216 4.216 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.237 0.763 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.015 0.985 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.162 0.838 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.074 0.926 48 H 0.133 0.867 49 H 0.072 0.928 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.309 -18.659 11.323 25.563 hybrid contribution 0.678 0.835 -0.925 1.419 sum -12.632 -17.824 10.398 24.194 Atomic orbital electron populations 1.20834 0.82067 1.06424 1.05565 1.22391 0.97544 0.85637 0.95362 1.21468 0.89460 0.96065 1.20379 1.16800 0.85514 0.82702 0.75797 1.90634 1.15949 1.83694 1.52481 1.46001 1.09947 1.05828 1.72990 1.20299 0.94531 0.79399 0.95746 1.22113 1.00272 1.02767 0.95513 1.22235 0.98422 1.01752 0.94347 1.20859 0.87552 0.92538 0.96397 1.44283 1.22503 1.50147 1.15993 1.19507 0.90976 1.20660 1.08189 0.91837 1.25784 0.96292 1.01419 1.01026 1.70198 0.99688 1.38405 1.49573 0.85260 0.77018 0.79588 0.78523 1.20931 1.22307 1.19552 1.20550 0.92454 0.97435 0.84152 1.22337 0.96375 0.99420 0.99004 1.74639 1.20276 1.05004 1.10714 1.81818 0.98343 1.02858 1.23985 1.50997 1.05130 1.08574 1.48635 1.22208 1.02497 0.73102 0.98958 1.22171 1.01886 1.02609 0.95160 1.22159 1.01925 1.02534 0.94976 0.88083 0.87072 0.88151 0.76261 0.92221 0.90716 0.91187 0.90212 0.91312 0.93689 0.98492 0.94155 0.92525 0.98503 0.90645 0.90550 0.83775 0.92826 0.86617 0.92635 0.86731 0.92757 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.41 71.23 0.67 -0.70 16 2 C 0.13 3.10 7.02 41.71 0.29 3.39 16 3 C -0.13 -4.28 6.99 40.82 0.29 -4.00 16 4 C 0.61 20.68 7.24 86.69 0.63 21.31 16 5 O -0.55 -18.53 10.93 -4.00 -0.04 -18.57 16 6 N -0.70 -24.88 4.09 -425.94 -1.74 -26.62 16 7 C 0.19 6.42 0.66 3.63 0.00 6.42 16 8 C -0.15 -4.26 8.40 71.98 0.60 -3.65 16 9 C -0.13 -4.80 4.67 30.67 0.14 -4.66 16 10 C 0.15 6.97 6.26 86.36 0.54 7.51 16 11 N -0.61 -31.69 2.99 -698.99 -2.09 -33.78 16 12 C -0.26 -14.99 9.58 84.03 0.81 -14.18 16 13 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 14 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 15 N -0.93 -56.51 11.19 21.65 0.24 -56.27 16 16 Si 0.97 46.03 29.59 68.60 2.03 48.06 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.18 8.82 5.04 86.38 0.43 9.26 16 21 C -0.13 -4.97 4.96 30.69 0.15 -4.82 16 22 N -0.23 -8.26 12.04 -49.99 -0.60 -8.86 16 23 N -0.09 -2.80 13.67 37.02 0.51 -2.30 16 24 N -0.35 -7.60 3.28 -313.38 -1.03 -8.63 16 25 C 0.13 1.49 3.68 44.99 0.17 1.66 16 26 C -0.16 -1.77 9.47 71.98 0.68 -1.09 16 27 C -0.16 -1.49 9.47 71.98 0.68 -0.80 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 0.77 7.18 -2.39 -0.02 0.75 16 30 H 0.10 1.89 6.43 -2.39 -0.02 1.87 16 31 H 0.40 15.30 6.96 -92.71 -0.64 14.65 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.09 6.17 -2.39 -0.01 2.07 16 35 H 0.08 2.92 6.20 -2.39 -0.01 2.91 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 2.05 7.93 -2.38 -0.02 2.03 16 38 H 0.00 -0.14 7.74 -2.39 -0.02 -0.16 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.06 3.14 6.03 -2.39 -0.01 3.12 16 41 H 0.00 -0.16 6.94 -2.39 -0.02 -0.18 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.14 0.63 6.79 -2.39 -0.02 0.62 16 45 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -73.99 389.11 4.07 -69.91 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.30 Total: 23.86 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.50 Total: 13.20 kcal Atomic # 7 Polarization: -131.75 SS G_CDS: -4.72 Total: -136.47 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.04 Total: -18.57 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.99 4.07 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045601476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.423 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds