Wall clock time and date at job start Tue Mar 31 2020 20:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47568 * 2 1 4 4 C 1.36593 * 126.58503 * 270.03496 * 3 2 1 5 5 C 1.47521 * 125.77002 * 359.94553 * 4 3 2 6 6 O 1.21591 * 120.00057 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00230 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00360 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.20094 * 35.64102 * 8 7 5 10 10 C 1.50129 * 109.21080 * 154.99860 * 8 7 5 11 11 C 1.52521 * 105.41551 * 218.03357 * 10 8 7 12 12 C 1.46240 * 114.27680 * 270.59232 * 11 10 8 13 13 N 1.50170 * 107.58691 * 58.37370 * 12 11 10 14 14 C 1.36936 * 120.53513 * 109.60798 * 13 12 11 15 15 H 1.08007 * 119.99894 * 320.24180 * 14 13 12 16 16 C 1.38808 * 120.00119 * 140.24463 * 14 13 12 17 17 N 1.31621 * 120.00243 * 156.34542 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 336.34765 * 16 14 13 19 19 H 1.48500 * 109.47193 * 95.56814 * 18 16 14 20 20 H 1.48506 * 109.47159 * 215.57025 * 18 16 14 21 21 H 1.48499 * 109.47202 * 335.56425 * 18 16 14 22 22 C 1.43406 * 118.94951 * 289.71346 * 13 12 11 23 23 C 1.54840 * 109.21154 * 276.32792 * 8 7 5 24 24 N 1.34403 * 108.46015 * 180.22086 * 4 3 2 25 25 N 1.28766 * 109.52174 * 359.57850 * 24 4 3 26 26 N 1.34822 * 126.57698 * 90.00287 * 3 2 1 27 27 C 1.46502 * 126.59361 * 0.05788 * 26 3 2 28 28 C 1.52992 * 109.47246 * 90.00026 * 27 26 3 29 29 H 1.08993 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46665 * 299.99717 * 1 2 3 31 31 H 1.09002 * 109.47147 * 59.99021 * 1 2 3 32 32 H 1.09003 * 109.46665 * 240.00283 * 2 1 3 33 33 H 1.09002 * 109.47147 * 120.00979 * 2 1 3 34 34 H 0.97006 * 119.99624 * 0.02562 * 7 5 4 35 35 H 1.08994 * 110.24939 * 99.05937 * 10 8 7 36 36 H 1.09002 * 110.24910 * 337.00617 * 10 8 7 37 37 H 1.08997 * 108.52586 * 149.35103 * 11 10 8 38 38 H 1.09007 * 108.40543 * 31.74588 * 11 10 8 39 39 H 1.09002 * 109.84894 * 177.91592 * 12 11 10 40 40 H 1.08994 * 109.84646 * 298.83700 * 12 11 10 41 41 H 0.97003 * 120.00492 * 179.97438 * 17 16 14 42 42 H 1.09003 * 108.11554 * 329.72393 * 22 13 12 43 43 H 1.08994 * 107.96903 * 213.07465 * 22 13 12 44 44 H 1.09001 * 109.35460 * 320.99439 * 23 8 7 45 45 H 1.09002 * 109.35766 * 80.71448 * 23 8 7 46 46 H 1.08996 * 109.46868 * 210.00164 * 27 26 3 47 47 H 1.09003 * 109.47079 * 329.99578 * 27 26 3 48 48 H 1.09003 * 109.47556 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.47192 * 300.00388 * 28 27 26 50 50 H 1.09003 * 109.46950 * 59.99959 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3032 2.1885 -1.0968 5 6 2.1544 1.7668 -2.5026 6 8 1.7588 0.6469 -2.7628 7 7 2.4569 2.6229 -3.4986 8 6 2.3086 2.2044 -4.8947 9 1 1.4411 1.5503 -4.9826 10 6 2.1019 3.4174 -5.7547 11 6 1.0818 2.9983 -6.8083 12 6 1.6685 2.4222 -8.0177 13 7 2.4771 1.2262 -7.6043 14 6 2.0568 -0.0392 -7.9159 15 1 1.0088 -0.2918 -7.8497 16 6 2.9776 -0.9974 -8.3168 17 7 2.7023 -2.2763 -8.1715 18 14 4.6077 -0.4720 -9.0625 19 1 5.6494 -0.4425 -8.0046 20 1 5.0027 -1.4376 -10.1194 21 1 4.4669 0.8817 -9.6565 22 6 3.6955 1.4301 -6.8760 23 6 3.5760 1.4295 -5.3317 24 7 2.7340 3.3910 -0.6787 25 7 2.7397 3.4223 0.6086 26 7 2.3003 2.1781 1.0827 27 6 2.1601 1.7778 2.4850 28 6 3.4716 1.1587 2.9722 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 2.7729 3.5162 -3.2910 35 1 3.0388 3.7065 -6.2308 36 1 1.7107 4.2411 -5.1575 37 1 0.4960 3.8731 -7.0906 38 1 0.4111 2.2624 -6.3645 39 1 0.8780 2.1156 -8.7027 40 1 2.3135 3.1556 -8.5016 41 1 3.3456 -2.9459 -8.4520 42 1 4.1182 2.3867 -7.1836 43 1 4.3944 0.6445 -7.1631 44 1 4.4569 1.9053 -4.9008 45 1 3.5109 0.4009 -4.9768 46 1 1.9243 2.6528 3.0907 47 1 1.3572 1.0462 2.5754 48 1 3.3674 0.8612 4.0157 49 1 3.7075 0.2838 2.3664 50 1 4.2745 1.8904 2.8817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052702733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:33 Heat of formation + Delta-G solvation = 53.771143 kcal Electronic energy + Delta-G solvation = -30182.356700 eV Core-core repulsion = 26246.360503 eV Total energy + Delta-G solvation = -3935.996197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.39338 -40.89990 -39.33944 -36.86432 -36.29232 -34.82337 -34.53761 -33.09630 -32.48526 -31.40753 -30.72332 -28.07299 -26.23281 -25.65014 -25.22537 -24.67596 -23.93303 -21.97232 -21.60186 -21.17266 -21.02567 -18.94512 -18.47237 -17.70229 -17.30243 -17.08353 -16.87337 -16.24550 -15.99375 -15.77909 -15.65811 -15.35674 -15.12853 -14.87036 -14.83991 -14.68265 -14.18836 -13.99902 -13.81289 -13.74226 -13.56294 -13.40812 -13.30323 -13.16832 -12.74782 -12.67106 -12.41098 -12.36198 -12.27212 -12.20776 -12.03209 -11.87703 -11.77170 -11.59618 -11.46385 -11.25806 -11.21999 -11.01436 -10.55459 -10.33147 -9.94390 -8.64233 -8.17849 -5.56994 0.05951 0.58271 1.03515 1.32958 1.40922 1.53803 2.15303 2.23211 2.45218 3.04139 3.09471 3.36115 3.38185 3.49017 3.67516 3.87011 3.93321 3.99563 4.11662 4.20207 4.22987 4.25999 4.35739 4.37854 4.43396 4.49183 4.57299 4.61395 4.71184 4.72443 4.83550 4.89054 4.90443 4.91049 4.99996 5.09343 5.12593 5.15947 5.19598 5.24982 5.27981 5.39028 5.40055 5.47910 5.60030 5.63205 5.99037 6.21001 6.47822 6.87867 7.05574 7.21405 7.67811 8.12866 9.02149 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.002976 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.452334 B = 9407.151152 C = 9952.533401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C 0.134 3.866 4 C -0.126 4.126 5 C 0.594 3.406 6 O -0.563 6.563 7 N -0.703 5.703 8 C 0.168 3.832 9 H 0.054 0.946 10 C -0.110 4.110 11 C -0.126 4.126 12 C 0.134 3.866 13 N -0.613 5.613 14 C -0.254 4.254 15 H 0.031 0.969 16 C -0.020 4.020 17 N -0.949 5.949 18 Si 0.946 3.054 19 H -0.281 1.281 20 H -0.308 1.308 21 H -0.251 1.251 22 C 0.147 3.853 23 C -0.141 4.141 24 N -0.219 5.219 25 N -0.085 5.085 26 N -0.345 5.345 27 C 0.102 3.898 28 C -0.168 4.168 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.020 0.980 46 H 0.123 0.877 47 H 0.131 0.869 48 H 0.114 0.886 49 H 0.059 0.941 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 12.543 23.707 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.005 4.005 4 C -0.266 4.266 5 C 0.379 3.621 6 O -0.441 6.441 7 N -0.354 5.354 8 C 0.064 3.936 9 H 0.072 0.928 10 C -0.148 4.148 11 C -0.165 4.165 12 C 0.011 3.989 13 N -0.336 5.336 14 C -0.384 4.384 15 H 0.049 0.951 16 C -0.216 4.216 17 N -0.593 5.593 18 Si 0.774 3.226 19 H -0.209 1.209 20 H -0.237 1.237 21 H -0.175 1.175 22 C 0.020 3.980 23 C -0.183 4.183 24 N -0.092 5.092 25 N -0.064 5.064 26 N -0.132 5.132 27 C -0.016 4.016 28 C -0.226 4.226 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.141 0.859 47 H 0.149 0.851 48 H 0.133 0.867 49 H 0.078 0.922 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.701 13.040 23.902 27.237 hybrid contribution 0.573 -1.239 -0.619 1.498 sum -0.128 11.802 23.283 26.104 Atomic orbital electron populations 1.21639 0.92277 1.03752 1.01821 1.20552 0.97900 0.86060 1.05882 1.22204 0.95418 0.96735 0.86162 1.21208 1.16853 0.93266 0.95226 1.17104 0.77082 0.84446 0.83494 1.90817 1.48244 1.20970 1.84051 1.46089 1.66579 1.17055 1.05682 1.20936 0.97442 0.96482 0.78704 0.92780 1.21300 1.01022 0.95699 0.96760 1.20748 0.98394 1.00471 0.96897 1.20656 0.94935 0.87751 0.95509 1.44345 1.26236 1.02152 1.60910 1.18549 0.93216 0.87055 1.39548 0.95128 1.26167 1.02087 0.94744 0.98648 1.70050 1.38435 1.01242 1.49526 0.85786 0.80438 0.78428 0.77939 1.20877 1.23653 1.17477 1.20718 0.88388 0.98865 0.90063 1.23104 0.97850 0.98664 0.98661 1.74533 1.11514 1.18327 1.04842 1.81824 1.20809 1.00772 1.02995 1.50775 1.43838 1.09804 1.08737 1.22564 1.01656 1.03731 0.73680 1.22201 0.95383 1.00959 1.04066 0.89710 0.90769 0.94617 0.89286 0.86611 0.74949 0.89381 0.88699 0.89505 0.94594 0.92353 0.92044 0.92979 0.91497 0.96578 0.90504 0.96131 0.85855 0.85118 0.86731 0.92237 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.90 71.98 0.71 -1.70 16 2 C -0.06 -1.25 5.43 29.85 0.16 -1.09 16 3 C 0.13 3.12 6.27 41.71 0.26 3.38 16 4 C -0.13 -3.70 6.99 40.81 0.29 -3.42 16 5 C 0.59 20.64 7.77 86.69 0.67 21.31 16 6 O -0.56 -23.58 14.38 -4.00 -0.06 -23.64 16 7 N -0.70 -21.95 4.97 -447.13 -2.22 -24.17 16 8 C 0.17 5.96 2.22 44.70 0.10 6.06 16 9 H 0.05 2.41 6.26 -2.39 -0.01 2.40 16 10 C -0.11 -3.04 5.34 29.51 0.16 -2.88 16 11 C -0.13 -3.91 5.20 28.35 0.15 -3.76 16 12 C 0.13 4.92 6.11 83.58 0.51 5.43 16 13 N -0.61 -28.94 2.14 -707.91 -1.51 -30.46 16 14 C -0.25 -14.89 9.92 84.03 0.83 -14.05 16 15 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 16 C -0.02 -1.21 5.28 84.86 0.45 -0.77 16 17 N -0.95 -61.84 13.97 21.65 0.30 -61.54 16 18 Si 0.95 47.74 25.27 68.60 1.73 49.47 16 19 H -0.28 -13.82 6.74 99.48 0.67 -13.15 16 20 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 21 H -0.25 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.15 6.34 4.22 87.60 0.37 6.71 16 23 C -0.14 -5.68 5.98 31.87 0.19 -5.49 16 24 N -0.22 -6.24 12.04 -50.00 -0.60 -6.84 16 25 N -0.08 -2.13 13.78 37.02 0.51 -1.62 16 26 N -0.35 -6.50 3.63 -333.79 -1.21 -7.71 16 27 C 0.10 0.80 6.87 86.38 0.59 1.40 16 28 C -0.17 -1.12 10.24 71.98 0.74 -0.38 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 2.37 6.43 -2.39 -0.02 2.36 16 33 H 0.12 1.31 7.82 -2.39 -0.02 1.29 16 34 H 0.41 10.68 8.16 -92.70 -0.76 9.92 16 35 H 0.09 2.24 6.29 -2.39 -0.02 2.22 16 36 H 0.09 2.08 7.85 -2.39 -0.02 2.06 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.33 6.92 -2.38 -0.02 1.31 16 39 H 0.06 2.23 7.99 -2.39 -0.02 2.21 16 40 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 41 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 42 H 0.07 2.40 6.89 -2.39 -0.02 2.38 16 43 H 0.02 0.79 3.39 -2.39 -0.01 0.78 16 44 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.13 0.33 7.76 -2.39 -0.02 0.32 16 48 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -81.36 390.52 3.28 -78.09 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.16 Total: 17.65 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.18 Total: 10.76 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -4.74 Total: -132.34 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.06 Total: -23.64 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.73 Total: 49.47 kcal Total: -81.36 3.28 -78.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052702733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.859 kcal (2) G-P(sol) polarization free energy of solvation -81.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds