Wall clock time and date at job start Tue Mar 31 2020 18:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36596 * 126.58219 * 2 1 4 4 C 1.47525 * 125.77048 * 359.97438 * 3 2 1 5 5 O 1.21596 * 119.99818 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99924 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99833 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.48479 * 325.04250 * 7 6 4 9 9 C 1.52568 * 109.48846 * 204.99898 * 7 6 4 10 10 C 1.47094 * 114.32358 * 155.02274 * 9 7 6 11 11 C 1.54860 * 110.32715 * 62.79800 * 10 9 7 12 12 N 1.44582 * 109.59729 * 288.73431 * 11 10 9 13 13 C 1.36940 * 118.64080 * 270.69699 * 12 11 10 14 14 H 1.07998 * 119.99593 * 26.63088 * 13 12 11 15 15 C 1.38813 * 120.00062 * 206.90086 * 13 12 11 16 16 N 1.31621 * 119.99745 * 15.42886 * 15 13 12 17 17 Si 1.86795 * 119.99960 * 195.42658 * 15 13 12 18 18 H 1.48501 * 109.46743 * 90.00305 * 17 15 13 19 19 H 1.48499 * 109.47295 * 209.99883 * 17 15 13 20 20 H 1.48495 * 109.47327 * 330.00316 * 17 15 13 21 21 C 1.47598 * 122.71199 * 90.98732 * 12 11 10 22 22 C 1.50877 * 109.49351 * 85.10877 * 7 6 4 23 23 N 1.34401 * 108.45710 * 180.24369 * 3 2 1 24 24 N 1.28754 * 109.52630 * 359.59096 * 23 3 2 25 25 N 1.34820 * 126.58144 * 180.02562 * 2 1 3 26 26 C 1.46503 * 126.59204 * 359.97438 * 25 2 1 27 27 C 1.53004 * 109.47039 * 119.99996 * 26 25 2 28 28 C 1.52996 * 109.47368 * 240.00004 * 26 25 2 29 29 H 1.08993 * 109.47421 * 90.01988 * 1 2 3 30 30 H 1.09001 * 109.47269 * 210.02019 * 1 2 3 31 31 H 1.09003 * 109.47003 * 330.01518 * 1 2 3 32 32 H 0.96995 * 120.00173 * 359.97438 * 6 4 3 33 33 H 1.09003 * 108.51336 * 33.76644 * 9 7 6 34 34 H 1.08997 * 108.38625 * 276.18004 * 9 7 6 35 35 H 1.09008 * 109.32791 * 302.53279 * 10 9 7 36 36 H 1.09004 * 109.18662 * 182.97598 * 10 9 7 37 37 H 1.09001 * 109.45055 * 168.69336 * 11 10 9 38 38 H 1.08996 * 109.44817 * 48.77023 * 11 10 9 39 39 H 0.96998 * 119.99811 * 180.02562 * 16 15 13 40 40 H 1.08999 * 108.94918 * 78.29351 * 21 12 11 41 41 H 1.09002 * 108.94658 * 196.92142 * 21 12 11 42 42 H 1.09004 * 109.36695 * 332.04491 * 22 7 6 43 43 H 1.08997 * 109.36292 * 91.66041 * 22 7 6 44 44 H 1.09004 * 109.47163 * 0.02562 * 26 25 2 45 45 H 1.09000 * 109.47104 * 59.99732 * 27 26 25 46 46 H 1.08999 * 109.47139 * 180.02562 * 27 26 25 47 47 H 1.09006 * 109.46811 * 299.99810 * 27 26 25 48 48 H 1.09000 * 109.46847 * 59.99797 * 28 26 25 49 49 H 1.08994 * 109.47541 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.46782 * 300.00272 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 0.0000 7 6 2.3376 4.8948 0.0001 8 1 1.4251 4.9860 -0.5891 9 6 3.4257 5.7751 -0.6071 10 6 2.9327 7.0324 -1.1901 11 6 2.2903 7.9180 -0.0942 12 7 1.0343 7.3368 0.3244 13 6 -0.1081 7.6929 -0.3415 14 1 -0.0545 8.0179 -1.3700 15 6 -1.3342 7.6416 0.3073 16 7 -1.3811 7.5508 1.6195 17 14 -2.9175 7.7015 -0.6821 18 1 -3.3296 6.3206 -1.0406 19 1 -3.9841 8.3415 0.1290 20 1 -2.6975 8.4898 -1.9211 21 6 0.9319 6.3804 1.4439 22 6 2.0687 5.3375 1.4171 23 7 3.5983 0.6788 -0.0054 24 7 3.6298 -0.6084 -0.0001 25 7 2.3104 -1.0826 -0.0005 26 6 1.8863 -2.4849 -0.0006 27 6 2.4286 -3.1816 -1.2502 28 6 2.4295 -3.1821 1.2483 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5136 32 1 3.7292 3.2912 0.0012 33 1 3.9347 5.2082 -1.3867 34 1 4.1485 6.0153 0.1726 35 1 2.1890 6.8082 -1.9549 36 1 3.7666 7.5680 -1.6440 37 1 2.1130 8.9170 -0.4926 38 1 2.9631 7.9827 0.7608 39 1 -2.2379 7.5146 2.0728 40 1 0.9733 6.9302 2.3841 41 1 -0.0252 5.8625 1.3805 42 1 1.7815 4.4741 2.0173 43 1 2.9725 5.7811 1.8348 44 1 0.7974 -2.5352 -0.0007 45 1 3.5175 -3.1313 -1.2506 46 1 2.1127 -4.2249 -1.2505 47 1 2.0416 -2.6849 -2.1399 48 1 2.0431 -2.6857 2.1385 49 1 2.1144 -4.2255 1.2480 50 1 3.5183 -3.1318 1.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052830321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:30 Heat of formation + Delta-G solvation = 49.454046 kcal Electronic energy + Delta-G solvation = -30061.303707 eV Core-core repulsion = 26125.120307 eV Total energy + Delta-G solvation = -3936.183400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.36336 -40.86061 -39.10715 -37.38112 -36.32624 -34.51575 -33.98575 -32.74948 -32.45983 -31.53116 -28.93680 -28.28603 -27.72337 -25.80065 -25.13351 -24.97847 -23.76881 -21.72037 -21.34390 -21.10863 -20.78030 -18.68003 -18.51824 -17.57220 -17.29811 -17.14095 -16.75396 -16.14533 -15.82968 -15.53153 -15.42934 -15.28531 -15.09387 -14.79152 -14.37785 -14.26059 -14.07133 -14.02133 -13.96808 -13.59737 -13.28325 -13.22672 -13.17675 -13.00840 -12.97289 -12.73499 -12.54547 -12.49836 -12.43357 -12.10474 -11.98575 -11.94753 -11.71842 -11.49541 -11.39091 -11.32064 -11.16611 -11.01759 -10.40794 -10.31001 -9.95998 -8.60914 -7.81399 -5.27114 0.08844 0.61002 1.01586 1.44675 1.49134 1.55155 2.15417 2.24520 2.54356 3.13190 3.29812 3.32753 3.52803 3.70101 3.73624 3.80041 3.83115 3.96564 4.09052 4.10178 4.40412 4.48968 4.50216 4.52060 4.55250 4.61758 4.62804 4.67048 4.71914 4.74351 4.83326 4.86498 4.95724 5.02881 5.09817 5.17151 5.19095 5.21460 5.24488 5.26733 5.37222 5.52624 5.54237 5.61502 5.65849 5.72565 5.81404 6.45639 6.49466 6.90675 7.22743 7.23057 8.00168 8.38911 9.23674 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002995 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.017761 B = 9345.440952 C =10440.866460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.129 3.871 3 C -0.128 4.128 4 C 0.596 3.404 5 O -0.563 6.563 6 N -0.702 5.702 7 C 0.166 3.834 8 H 0.059 0.941 9 C -0.105 4.105 10 C -0.131 4.131 11 C 0.148 3.852 12 N -0.604 5.604 13 C -0.259 4.259 14 H 0.065 0.935 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.958 3.042 18 H -0.292 1.292 19 H -0.293 1.293 20 H -0.266 1.266 21 C 0.198 3.802 22 C -0.132 4.132 23 N -0.220 5.220 24 N -0.080 5.080 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.158 4.158 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.246 0.754 40 H -0.003 1.003 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.059 0.941 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -23.656 -3.847 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.268 4.268 4 C 0.381 3.619 5 O -0.441 6.441 6 N -0.352 5.352 7 C 0.062 3.938 8 H 0.077 0.923 9 C -0.142 4.142 10 C -0.171 4.171 11 C 0.022 3.978 12 N -0.326 5.326 13 C -0.390 4.390 14 H 0.083 0.917 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.787 3.213 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.191 1.191 21 C 0.072 3.928 22 C -0.172 4.172 23 N -0.094 5.094 24 N -0.060 5.060 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.216 4.216 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.249 0.751 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.156 0.844 45 H 0.078 0.922 46 H 0.132 0.868 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.226 -23.890 -3.741 26.254 hybrid contribution -1.671 0.448 -0.073 1.731 sum 8.555 -23.441 -3.814 25.244 Atomic orbital electron populations 1.20794 0.83071 1.05939 1.05534 1.22241 0.97217 0.86102 0.95483 1.21182 0.89808 0.95094 1.20678 1.17063 0.85443 0.83425 0.76006 1.90827 1.17267 1.84075 1.51967 1.45919 1.10080 1.05569 1.73646 1.20233 0.98383 0.78859 0.96352 0.92310 1.20535 0.96680 0.95990 1.01031 1.21283 1.00216 0.96635 0.98973 1.20943 0.86721 0.94646 0.95538 1.43862 1.03373 1.48065 1.37344 1.19484 0.86266 1.39220 0.93996 0.91713 1.25734 1.01141 1.01663 0.96013 1.70215 1.24198 1.56074 1.07683 0.85390 0.80119 0.77308 0.78444 1.21984 1.22002 1.19056 1.20649 0.95163 0.88568 0.88426 1.22298 0.99820 0.98498 0.96535 1.74544 1.19244 1.04884 1.10696 1.81768 0.97983 1.02790 1.23423 1.50932 1.05084 1.08371 1.48720 1.22224 1.02382 0.73059 0.99275 1.22159 1.02144 1.02449 0.94821 1.22167 1.02172 1.02472 0.94870 0.87902 0.86996 0.89480 0.75147 0.90722 0.90427 0.94149 0.89279 0.94184 0.93501 0.94455 0.98462 0.94859 0.93364 0.91061 0.84378 0.92190 0.86824 0.92436 0.92491 0.86806 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.41 71.23 0.67 -1.13 16 2 C 0.13 3.09 7.02 41.71 0.29 3.38 16 3 C -0.13 -3.89 6.99 40.82 0.29 -3.60 16 4 C 0.60 21.42 7.64 86.69 0.66 22.08 16 5 O -0.56 -24.30 14.38 -4.02 -0.06 -24.36 16 6 N -0.70 -23.08 4.93 -449.69 -2.22 -25.30 16 7 C 0.17 6.20 2.06 44.16 0.09 6.29 16 8 H 0.06 2.79 6.92 -2.39 -0.02 2.77 16 9 C -0.10 -3.16 4.70 28.61 0.13 -3.03 16 10 C -0.13 -4.35 5.74 29.39 0.17 -4.18 16 11 C 0.15 6.05 5.65 87.37 0.49 6.54 16 12 N -0.60 -30.97 2.26 -697.70 -1.58 -32.55 16 13 C -0.26 -14.75 9.44 84.03 0.79 -13.95 16 14 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 15 C -0.05 -2.96 4.87 84.86 0.41 -2.55 16 16 N -0.94 -57.98 11.01 21.65 0.24 -57.74 16 17 Si 0.96 47.52 29.58 68.60 2.03 49.55 16 18 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.20 10.23 4.70 86.61 0.41 10.64 16 22 C -0.13 -5.35 5.39 30.34 0.16 -5.19 16 23 N -0.22 -6.50 12.04 -49.99 -0.60 -7.10 16 24 N -0.08 -2.08 13.67 37.02 0.51 -1.58 16 25 N -0.34 -6.86 3.28 -313.38 -1.03 -7.89 16 26 C 0.13 1.31 3.68 44.99 0.17 1.48 16 27 C -0.16 -1.29 9.47 71.98 0.68 -0.61 16 28 C -0.16 -1.33 9.47 71.98 0.68 -0.65 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.18 7.19 -2.39 -0.02 1.16 16 31 H 0.09 2.27 6.43 -2.39 -0.02 2.26 16 32 H 0.41 11.40 8.29 -92.71 -0.77 10.63 16 33 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 34 H 0.08 2.05 7.35 -2.39 -0.02 2.04 16 35 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.04 1.66 7.99 -2.39 -0.02 1.64 16 38 H 0.05 1.77 8.06 -2.39 -0.02 1.76 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.00 -0.15 8.03 -2.39 -0.02 -0.17 16 41 H 0.03 2.00 6.33 -2.39 -0.02 1.98 16 42 H 0.05 2.01 7.85 -2.38 -0.02 1.99 16 43 H 0.07 2.54 7.31 -2.39 -0.02 2.52 16 44 H 0.14 0.64 6.79 -2.38 -0.02 0.63 16 45 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 0.23 8.14 -2.39 -0.02 0.22 16 47 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -77.13 394.73 3.57 -73.56 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.17 Total: 17.89 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.10 Total: 15.52 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -4.68 Total: -132.16 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -77.13 3.57 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052830321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.014 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds