Wall clock time and date at job start Tue Mar 31 2020 18:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36593 * 126.57405 * 2 1 4 4 C 1.47530 * 125.77551 * 359.94711 * 3 2 1 5 5 O 1.21600 * 119.99473 * 0.02562 * 4 3 2 6 6 N 1.34765 * 120.00200 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00168 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.20597 * 35.64082 * 7 6 4 9 9 C 1.50126 * 109.21343 * 154.99991 * 7 6 4 10 10 C 1.52525 * 105.41806 * 218.03147 * 9 7 6 11 11 C 1.46234 * 114.27645 * 270.59077 * 10 9 7 12 12 N 1.50174 * 107.58984 * 58.37170 * 11 10 9 13 13 C 1.36937 * 120.53457 * 109.60537 * 12 11 10 14 14 H 1.08005 * 119.99622 * 156.71314 * 13 12 11 15 15 C 1.38811 * 120.00177 * 336.70635 * 13 12 11 16 16 N 1.31620 * 120.00265 * 340.43834 * 15 13 12 17 17 Si 1.86800 * 119.99849 * 160.43045 * 15 13 12 18 18 H 1.48504 * 109.46961 * 60.00542 * 17 15 13 19 19 H 1.48504 * 109.47010 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47438 * 300.00250 * 17 15 13 21 21 C 1.43403 * 118.94403 * 289.71293 * 12 11 10 22 22 C 1.54840 * 109.21059 * 276.32556 * 7 6 4 23 23 N 1.34401 * 108.45817 * 180.22075 * 3 2 1 24 24 N 1.28768 * 109.52059 * 359.58325 * 23 3 2 25 25 N 1.34808 * 126.58400 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.59169 * 359.97438 * 25 2 1 27 27 C 1.53003 * 109.46806 * 120.00417 * 26 25 2 28 28 C 1.53005 * 109.46681 * 239.99868 * 26 25 2 29 29 H 1.09003 * 109.47134 * 90.03455 * 1 2 3 30 30 H 1.09005 * 109.46721 * 210.02599 * 1 2 3 31 31 H 1.08990 * 109.47755 * 330.02755 * 1 2 3 32 32 H 0.97002 * 120.00073 * 0.02562 * 6 4 3 33 33 H 1.09000 * 110.25305 * 99.05521 * 9 7 6 34 34 H 1.09005 * 110.24792 * 337.00279 * 9 7 6 35 35 H 1.08997 * 108.52436 * 149.34424 * 10 9 7 36 36 H 1.09001 * 108.39917 * 31.73912 * 10 9 7 37 37 H 1.09002 * 109.84926 * 177.91462 * 11 10 9 38 38 H 1.08997 * 109.84681 * 298.83332 * 11 10 9 39 39 H 0.96994 * 119.99906 * 179.97438 * 16 15 13 40 40 H 1.09004 * 108.12414 * 329.72363 * 21 12 11 41 41 H 1.09005 * 107.97151 * 213.06829 * 21 12 11 42 42 H 1.08997 * 109.36001 * 320.99467 * 22 7 6 43 43 H 1.09003 * 109.35812 * 80.71503 * 22 7 6 44 44 H 1.08990 * 109.47510 * 0.02562 * 26 25 2 45 45 H 1.09002 * 109.47132 * 59.99810 * 27 26 25 46 46 H 1.08998 * 109.46892 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47019 * 299.99459 * 27 26 25 48 48 H 1.08997 * 109.46968 * 60.00990 * 28 26 25 49 49 H 1.09005 * 109.46638 * 180.02562 * 28 26 25 50 50 H 1.08995 * 109.47715 * 299.99738 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3209 1.0970 0.0000 4 6 1.8736 2.5028 -0.0011 5 8 0.6857 2.7628 -0.0017 6 7 2.7814 3.4988 -0.0015 7 6 2.3372 4.8948 -0.0020 8 1 1.4313 4.9831 0.5978 9 6 3.4118 5.7554 0.5967 10 6 2.6764 6.8094 1.4181 11 6 2.3288 8.0182 0.6721 12 7 1.4709 7.6041 -0.4888 13 6 0.1377 7.9155 -0.5146 14 1 -0.3868 7.9665 -1.4574 15 6 -0.5398 8.1655 0.6709 16 7 -0.0432 7.7432 1.8144 17 14 -2.1561 9.1015 0.6435 18 1 -3.1425 8.3617 -0.1842 19 1 -2.6737 9.2362 2.0289 20 1 -1.9369 10.4511 0.0641 21 6 2.0696 6.8752 -1.5689 22 6 2.0292 5.3309 -1.4555 23 7 3.5983 0.6791 -0.0049 24 7 3.6299 -0.6082 0.0009 25 7 2.3105 -1.0825 0.0005 26 6 1.8864 -2.4848 0.0016 27 6 2.4289 -3.1826 -1.2473 28 6 2.4298 -3.1808 1.2512 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5133 32 1 3.7290 3.2914 -0.0014 33 1 3.9967 6.2310 -0.1905 34 1 4.0580 5.1586 1.2406 35 1 3.3059 7.0922 2.2618 36 1 1.7592 6.3657 1.8052 37 1 1.7762 8.7036 1.3148 38 1 3.2352 8.5020 0.3083 39 1 -0.5164 7.9182 2.6428 40 1 3.1123 7.1828 -1.6487 41 1 1.5619 7.1616 -2.4901 42 1 2.7715 4.8997 -2.1271 43 1 1.0379 4.9757 -1.7369 44 1 0.7977 -2.5352 0.0016 45 1 3.5178 -3.1322 -1.2477 46 1 2.1138 -4.2261 -1.2462 47 1 2.0419 -2.6868 -2.1375 48 1 2.0433 -2.6837 2.1409 49 1 2.1146 -4.2243 1.2519 50 1 3.5185 -3.1305 1.2508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052830324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:36 Heat of formation + Delta-G solvation = 79.021778 kcal Electronic energy + Delta-G solvation = -30059.836266 eV Core-core repulsion = 26124.935019 eV Total energy + Delta-G solvation = -3934.901247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.32624 -39.30515 -37.53347 -36.65165 -34.58581 -33.10819 -32.22327 -31.49787 -31.07688 -29.74034 -27.85794 -27.84043 -26.04969 -24.15733 -24.07645 -23.47629 -22.14608 -20.53601 -20.19622 -19.59080 -18.99014 -17.63421 -16.65262 -16.42026 -16.25293 -15.42932 -14.99884 -14.90502 -14.45048 -14.34193 -14.05495 -13.85615 -13.64932 -13.45352 -13.31294 -13.18449 -13.09710 -12.77593 -12.67188 -12.35336 -12.14240 -12.03816 -12.02889 -11.76383 -11.66116 -11.37619 -11.18225 -11.14008 -10.71485 -10.53261 -10.34188 -10.28193 -10.14626 -9.97567 -9.70250 -9.47445 -9.40687 -9.26987 -9.13002 -8.46416 -8.26086 -6.62385 -5.69854 -3.08441 1.08460 1.82522 1.85548 3.46486 3.51553 3.53359 3.55999 3.60652 3.95168 4.12480 4.28699 4.40682 4.53597 4.59856 4.79459 4.88410 4.99340 5.08601 5.17222 5.23973 5.34479 5.42833 5.47817 5.49657 5.59759 5.62918 5.67071 5.77309 5.83823 5.96359 6.02669 6.12598 6.35888 6.36801 6.40711 6.52187 6.57985 6.80147 6.96536 6.98394 7.03307 7.11707 7.23564 7.31536 7.67175 7.82454 7.84474 8.05233 8.09192 8.52204 8.63727 9.28469 9.96010 10.48694 11.37810 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002746 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.852029 B =10194.521198 C =10887.464506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 C -0.100 4.100 4 C 0.596 3.404 5 O -0.530 6.530 6 N -0.711 5.711 7 C 0.156 3.844 8 H 0.104 0.896 9 C -0.122 4.122 10 C -0.129 4.129 11 C 0.165 3.835 12 N -0.588 5.588 13 C -0.247 4.247 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.162 3.838 22 C -0.151 4.151 23 N -0.206 5.206 24 N -0.071 5.071 25 N -0.360 5.360 26 C 0.144 3.856 27 C -0.162 4.162 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.006 0.994 39 H 0.252 0.748 40 H 0.028 0.972 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -21.313 -2.519 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.239 4.239 4 C 0.379 3.621 5 O -0.406 6.406 6 N -0.361 5.361 7 C 0.054 3.946 8 H 0.122 0.878 9 C -0.160 4.160 10 C -0.168 4.168 11 C 0.042 3.958 12 N -0.309 5.309 13 C -0.377 4.377 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.730 3.270 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.213 1.213 21 C 0.032 3.968 22 C -0.193 4.193 23 N -0.079 5.079 24 N -0.050 5.050 25 N -0.147 5.147 26 C 0.042 3.958 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.024 0.976 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.147 -21.473 -2.345 22.458 hybrid contribution -1.364 0.155 0.058 1.374 sum 4.783 -21.318 -2.286 21.967 Atomic orbital electron populations 1.20735 0.84788 1.05377 1.04630 1.21944 0.96256 0.86356 0.97191 1.21465 0.88829 0.95889 1.17739 1.16763 0.86002 0.82314 0.76993 1.90811 1.15783 1.83319 1.50645 1.46320 1.09326 1.06932 1.73490 1.21318 0.98898 0.76469 0.97918 0.87826 1.21371 0.97022 0.98053 0.99549 1.20928 1.00896 0.97742 0.97244 1.20161 0.91215 0.95308 0.89151 1.44272 1.06223 1.59938 1.20496 1.19156 0.85434 1.40865 0.92243 0.91581 1.24876 0.97642 1.01018 0.95963 1.69951 1.39957 1.47037 0.97545 0.86403 0.83852 0.80311 0.76418 1.21083 1.21819 1.21305 1.20359 0.95692 0.88702 0.92050 1.23306 1.00491 1.00646 0.94861 1.74593 1.19258 1.04103 1.09979 1.81867 0.96375 1.03378 1.23411 1.50583 1.06341 1.07102 1.50679 1.21617 1.00489 0.75444 0.98205 1.22151 1.03175 1.00783 0.95874 1.22159 1.03197 1.00810 0.95895 0.89101 0.91004 0.86618 0.76759 0.91834 0.92704 0.95174 0.87913 0.89173 0.97598 0.93773 0.95320 0.94856 0.93645 0.92462 0.87322 0.90730 0.89987 0.91707 0.91685 0.89989 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.41 36.01 0.34 -0.65 16 2 C 0.12 1.53 7.02 -81.88 -0.57 0.95 16 3 C -0.10 -1.56 6.99 -83.55 -0.58 -2.14 16 4 C 0.60 10.85 7.77 -12.48 -0.10 10.75 16 5 O -0.53 -11.13 14.38 5.28 0.08 -11.06 16 6 N -0.71 -12.41 4.97 -55.30 -0.27 -12.68 16 7 C 0.16 3.11 2.22 -68.39 -0.15 2.96 16 8 H 0.10 2.58 6.26 -51.93 -0.33 2.25 16 9 C -0.12 -2.25 5.34 -28.40 -0.15 -2.40 16 10 C -0.13 -2.78 5.03 -30.19 -0.15 -2.93 16 11 C 0.17 3.85 5.24 -5.20 -0.03 3.82 16 12 N -0.59 -14.53 2.61 -175.10 -0.46 -14.98 16 13 C -0.25 -6.77 9.62 -15.06 -0.14 -6.92 16 14 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 15 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 16 N -0.90 -25.20 9.43 55.49 0.52 -24.68 16 17 Si 0.90 21.93 29.60 -169.99 -5.03 16.90 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.16 3.46 5.17 -4.68 -0.02 3.43 16 22 C -0.15 -3.03 5.98 -24.76 -0.15 -3.18 16 23 N -0.21 -3.18 12.04 32.85 0.40 -2.79 16 24 N -0.07 -0.98 13.67 60.35 0.82 -0.16 16 25 N -0.36 -3.98 3.28 -50.40 -0.17 -4.14 16 26 C 0.14 0.96 3.68 -67.92 -0.25 0.71 16 27 C -0.16 -0.91 9.47 37.16 0.35 -0.56 16 28 C -0.16 -0.93 9.47 37.16 0.35 -0.57 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.12 1.48 6.43 -51.93 -0.33 1.15 16 32 H 0.40 6.13 8.16 -40.82 -0.33 5.80 16 33 H 0.06 1.12 6.29 -51.93 -0.33 0.79 16 34 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 2.60 5.29 -51.93 -0.27 2.32 16 37 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 38 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 41 H 0.03 0.71 7.98 -51.93 -0.41 0.30 16 42 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.11 0.50 6.79 -51.93 -0.35 0.14 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -31.71 389.50 -7.60 -39.31 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.01 Total: 5.13 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.35 Total: 3.28 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.85 Total: -59.43 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.71 -7.60 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052830324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.331 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds