Wall clock time and date at job start Tue Mar 31 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36593 * 126.57405 * 2 1 4 4 C 1.47530 * 125.77551 * 359.94711 * 3 2 1 5 5 O 1.21600 * 119.99473 * 0.02562 * 4 3 2 6 6 N 1.34765 * 120.00200 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00168 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.20597 * 35.64082 * 7 6 4 9 9 C 1.50126 * 109.21343 * 154.99991 * 7 6 4 10 10 C 1.52525 * 105.41806 * 218.03147 * 9 7 6 11 11 C 1.46234 * 114.27645 * 270.59077 * 10 9 7 12 12 N 1.50174 * 107.58984 * 58.37170 * 11 10 9 13 13 C 1.36937 * 120.53457 * 109.60537 * 12 11 10 14 14 H 1.08005 * 119.99622 * 156.71314 * 13 12 11 15 15 C 1.38811 * 120.00177 * 336.70635 * 13 12 11 16 16 N 1.31620 * 120.00265 * 340.43834 * 15 13 12 17 17 Si 1.86800 * 119.99849 * 160.43045 * 15 13 12 18 18 H 1.48504 * 109.46961 * 60.00542 * 17 15 13 19 19 H 1.48504 * 109.47010 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47438 * 300.00250 * 17 15 13 21 21 C 1.43403 * 118.94403 * 289.71293 * 12 11 10 22 22 C 1.54840 * 109.21059 * 276.32556 * 7 6 4 23 23 N 1.34401 * 108.45817 * 180.22075 * 3 2 1 24 24 N 1.28768 * 109.52059 * 359.58325 * 23 3 2 25 25 N 1.34808 * 126.58400 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.59169 * 359.97438 * 25 2 1 27 27 C 1.53003 * 109.46806 * 120.00417 * 26 25 2 28 28 C 1.53005 * 109.46681 * 239.99868 * 26 25 2 29 29 H 1.09003 * 109.47134 * 90.03455 * 1 2 3 30 30 H 1.09005 * 109.46721 * 210.02599 * 1 2 3 31 31 H 1.08990 * 109.47755 * 330.02755 * 1 2 3 32 32 H 0.97002 * 120.00073 * 0.02562 * 6 4 3 33 33 H 1.09000 * 110.25305 * 99.05521 * 9 7 6 34 34 H 1.09005 * 110.24792 * 337.00279 * 9 7 6 35 35 H 1.08997 * 108.52436 * 149.34424 * 10 9 7 36 36 H 1.09001 * 108.39917 * 31.73912 * 10 9 7 37 37 H 1.09002 * 109.84926 * 177.91462 * 11 10 9 38 38 H 1.08997 * 109.84681 * 298.83332 * 11 10 9 39 39 H 0.96994 * 119.99906 * 179.97438 * 16 15 13 40 40 H 1.09004 * 108.12414 * 329.72363 * 21 12 11 41 41 H 1.09005 * 107.97151 * 213.06829 * 21 12 11 42 42 H 1.08997 * 109.36001 * 320.99467 * 22 7 6 43 43 H 1.09003 * 109.35812 * 80.71503 * 22 7 6 44 44 H 1.08990 * 109.47510 * 0.02562 * 26 25 2 45 45 H 1.09002 * 109.47132 * 59.99810 * 27 26 25 46 46 H 1.08998 * 109.46892 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47019 * 299.99459 * 27 26 25 48 48 H 1.08997 * 109.46968 * 60.00990 * 28 26 25 49 49 H 1.09005 * 109.46638 * 180.02562 * 28 26 25 50 50 H 1.08995 * 109.47715 * 299.99738 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3209 1.0970 0.0000 4 6 1.8736 2.5028 -0.0011 5 8 0.6857 2.7628 -0.0017 6 7 2.7814 3.4988 -0.0015 7 6 2.3372 4.8948 -0.0020 8 1 1.4313 4.9831 0.5978 9 6 3.4118 5.7554 0.5967 10 6 2.6764 6.8094 1.4181 11 6 2.3288 8.0182 0.6721 12 7 1.4709 7.6041 -0.4888 13 6 0.1377 7.9155 -0.5146 14 1 -0.3868 7.9665 -1.4574 15 6 -0.5398 8.1655 0.6709 16 7 -0.0432 7.7432 1.8144 17 14 -2.1561 9.1015 0.6435 18 1 -3.1425 8.3617 -0.1842 19 1 -2.6737 9.2362 2.0289 20 1 -1.9369 10.4511 0.0641 21 6 2.0696 6.8752 -1.5689 22 6 2.0292 5.3309 -1.4555 23 7 3.5983 0.6791 -0.0049 24 7 3.6299 -0.6082 0.0009 25 7 2.3105 -1.0825 0.0005 26 6 1.8864 -2.4848 0.0016 27 6 2.4289 -3.1826 -1.2473 28 6 2.4298 -3.1808 1.2512 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5133 32 1 3.7290 3.2914 -0.0014 33 1 3.9967 6.2310 -0.1905 34 1 4.0580 5.1586 1.2406 35 1 3.3059 7.0922 2.2618 36 1 1.7592 6.3657 1.8052 37 1 1.7762 8.7036 1.3148 38 1 3.2352 8.5020 0.3083 39 1 -0.5164 7.9182 2.6428 40 1 3.1123 7.1828 -1.6487 41 1 1.5619 7.1616 -2.4901 42 1 2.7715 4.8997 -2.1271 43 1 1.0379 4.9757 -1.7369 44 1 0.7977 -2.5352 0.0016 45 1 3.5178 -3.1322 -1.2477 46 1 2.1138 -4.2261 -1.2462 47 1 2.0419 -2.6868 -2.1375 48 1 2.0433 -2.6837 2.1409 49 1 2.1146 -4.2243 1.2519 50 1 3.5185 -3.1305 1.2508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052830324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:34 Heat of formation + Delta-G solvation = 58.216466 kcal Electronic energy + Delta-G solvation = -30060.738452 eV Core-core repulsion = 26124.935019 eV Total energy + Delta-G solvation = -3935.803433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.35703 -40.81392 -39.19223 -37.37771 -36.26588 -34.13095 -33.89572 -33.29360 -32.27700 -31.27755 -28.90105 -28.28335 -27.85570 -25.75995 -25.21148 -24.92481 -23.54622 -21.94594 -21.40989 -20.85794 -20.70327 -18.67819 -18.55136 -17.46697 -17.26718 -16.96388 -16.86753 -16.11040 -15.80970 -15.51543 -15.42034 -15.23288 -15.07523 -14.95399 -14.24718 -14.10600 -14.03227 -14.01315 -13.88319 -13.47863 -13.24866 -13.20184 -13.18538 -13.10133 -13.00414 -12.63663 -12.54497 -12.44786 -12.35384 -12.11348 -11.97248 -11.89884 -11.73949 -11.54507 -11.17688 -11.16206 -11.09887 -10.97376 -10.40680 -10.27870 -9.86044 -8.60523 -7.78333 -5.18641 0.09333 0.61623 1.02371 1.49551 1.50404 1.57040 2.21303 2.25468 2.57784 3.14063 3.30519 3.34551 3.53653 3.65615 3.72348 3.80292 3.96705 4.05317 4.08168 4.15498 4.36481 4.50988 4.53451 4.55761 4.62244 4.63007 4.66521 4.67520 4.74652 4.76646 4.84526 4.90238 4.92044 5.06694 5.11462 5.17420 5.21201 5.21692 5.31721 5.33360 5.44123 5.52920 5.54939 5.69034 5.71013 5.80831 6.21629 6.46694 6.52377 6.91487 7.23211 7.24693 7.96603 8.45293 9.25768 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.002746 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.852029 B =10194.521198 C =10887.464506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.128 3.872 3 C -0.128 4.128 4 C 0.594 3.406 5 O -0.567 6.567 6 N -0.704 5.704 7 C 0.170 3.830 8 H 0.049 0.951 9 C -0.108 4.108 10 C -0.122 4.122 11 C 0.167 3.833 12 N -0.602 5.602 13 C -0.261 4.261 14 H 0.059 0.941 15 C -0.043 4.043 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.280 1.280 21 C 0.157 3.843 22 C -0.140 4.140 23 N -0.222 5.222 24 N -0.081 5.081 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.158 4.158 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.246 0.754 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.139 0.861 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.114 0.886 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -23.573 -3.204 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.011 4.011 3 C -0.268 4.268 4 C 0.379 3.621 5 O -0.445 6.445 6 N -0.354 5.354 7 C 0.067 3.933 8 H 0.067 0.933 9 C -0.146 4.146 10 C -0.161 4.161 11 C 0.044 3.956 12 N -0.323 5.323 13 C -0.391 4.391 14 H 0.076 0.924 15 C -0.239 4.239 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.206 1.206 21 C 0.028 3.972 22 C -0.182 4.182 23 N -0.095 5.095 24 N -0.060 5.060 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.216 4.216 28 C -0.217 4.217 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.248 0.752 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.043 0.957 44 H 0.157 0.843 45 H 0.078 0.922 46 H 0.132 0.868 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.022 -23.769 -3.046 24.971 hybrid contribution -1.628 0.719 0.253 1.798 sum 5.394 -23.050 -2.793 23.837 Atomic orbital electron populations 1.20794 0.82971 1.05914 1.05561 1.22252 0.97268 0.86050 0.95510 1.21205 0.89820 0.95131 1.20617 1.17110 0.85504 0.83482 0.75990 1.90793 1.17302 1.84146 1.52277 1.46138 1.09961 1.05931 1.73351 1.20888 0.97428 0.78188 0.96841 0.93273 1.21278 0.96453 0.97001 0.99894 1.20736 0.99739 0.97613 0.97995 1.20115 0.91299 0.95571 0.88604 1.44435 1.05617 1.60780 1.21508 1.19344 0.86924 1.40870 0.91978 0.92356 1.25522 1.00505 1.02031 0.95884 1.70133 1.40788 1.47646 0.97547 0.85513 0.80658 0.79265 0.75974 1.21134 1.22108 1.20634 1.20484 0.96893 0.89052 0.90741 1.23168 0.99554 0.99828 0.95612 1.74553 1.19307 1.04905 1.10729 1.81769 0.98012 1.02763 1.23450 1.50934 1.05076 1.08381 1.48711 1.22228 1.02401 0.73030 0.99269 1.22160 1.02129 1.02453 0.94834 1.22171 1.02155 1.02499 0.94868 0.87839 0.86959 0.89508 0.75249 0.89859 0.90259 0.93650 0.92042 0.92411 0.95025 0.94502 0.92501 0.95249 0.90716 0.95705 0.84318 0.92242 0.86782 0.92413 0.92505 0.86761 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.41 71.24 0.67 -1.11 16 2 C 0.13 3.14 7.02 41.72 0.29 3.43 16 3 C -0.13 -4.01 6.99 40.82 0.29 -3.72 16 4 C 0.59 22.19 7.77 86.70 0.67 22.86 16 5 O -0.57 -25.02 14.38 -4.03 -0.06 -25.07 16 6 N -0.70 -24.63 4.97 -447.14 -2.22 -26.85 16 7 C 0.17 6.85 2.22 44.69 0.10 6.95 16 8 H 0.05 2.57 6.26 -2.38 -0.01 2.56 16 9 C -0.11 -3.84 5.34 29.51 0.16 -3.69 16 10 C -0.12 -5.25 5.03 28.35 0.14 -5.10 16 11 C 0.17 7.81 5.24 83.58 0.44 8.25 16 12 N -0.60 -30.04 2.61 -707.88 -1.85 -31.89 16 13 C -0.26 -14.64 9.62 84.03 0.81 -13.84 16 14 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 15 C -0.04 -2.45 4.91 84.86 0.42 -2.04 16 16 N -0.92 -53.22 9.43 21.65 0.20 -53.01 16 17 Si 0.96 46.24 29.60 68.60 2.03 48.27 16 18 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 19 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 C 0.16 6.61 5.17 87.60 0.45 7.07 16 22 C -0.14 -5.61 5.98 31.87 0.19 -5.42 16 23 N -0.22 -6.76 12.04 -49.99 -0.60 -7.36 16 24 N -0.08 -2.14 13.67 37.02 0.51 -1.64 16 25 N -0.34 -7.00 3.28 -313.38 -1.03 -8.03 16 26 C 0.13 1.33 3.68 44.99 0.17 1.50 16 27 C -0.16 -1.31 9.47 71.98 0.68 -0.63 16 28 C -0.16 -1.36 9.47 71.98 0.68 -0.68 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.16 7.18 -2.38 -0.02 1.15 16 31 H 0.09 2.26 6.43 -2.39 -0.02 2.24 16 32 H 0.41 12.27 8.16 -92.71 -0.76 11.52 16 33 H 0.08 2.67 6.29 -2.39 -0.02 2.65 16 34 H 0.08 2.44 7.85 -2.38 -0.02 2.42 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 3.23 5.29 -2.39 -0.01 3.21 16 37 H 0.06 3.07 6.05 -2.39 -0.01 3.06 16 38 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 39 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.06 2.08 6.89 -2.39 -0.02 2.06 16 41 H 0.03 1.25 7.98 -2.38 -0.02 1.23 16 42 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 43 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.14 0.65 6.79 -2.39 -0.02 0.63 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.41 389.50 3.34 -70.07 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.20 Total: 21.70 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 6.16 Total: 13.82 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.99 Total: -128.79 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.07 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.41 3.34 -70.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052830324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.286 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds