Wall clock time and date at job start Tue Mar 31 2020 20:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46751 * 2 1 4 4 C 1.36589 * 126.58184 * 269.97523 * 3 2 1 5 5 C 1.47535 * 125.76940 * 359.97438 * 4 3 2 6 6 O 1.21588 * 119.99657 * 0.02562 * 5 4 3 7 7 N 1.34770 * 119.99798 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99764 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.52390 * 324.91203 * 8 7 5 10 10 C 1.53039 * 109.49460 * 204.83739 * 8 7 5 11 11 C 1.53049 * 109.53873 * 301.41000 * 10 8 7 12 12 C 1.53188 * 109.31275 * 298.63840 * 11 10 8 13 13 H 1.09008 * 109.70680 * 294.77820 * 12 11 10 14 14 C 1.53001 * 109.58817 * 174.42187 * 12 11 10 15 15 N 1.46928 * 108.77902 * 54.63317 * 12 11 10 16 16 C 1.36929 * 120.63393 * 126.40935 * 15 12 11 17 17 H 1.08004 * 120.00200 * 330.84899 * 16 15 12 18 18 C 1.38809 * 120.00367 * 150.84411 * 16 15 12 19 19 N 1.31626 * 119.99785 * 343.82800 * 18 16 15 20 20 Si 1.86793 * 120.00361 * 163.82161 * 18 16 15 21 21 H 1.48504 * 109.47031 * 94.31122 * 20 18 16 22 22 H 1.48496 * 109.47382 * 214.30849 * 20 18 16 23 23 H 1.48497 * 109.47172 * 334.31467 * 20 18 16 24 24 C 1.46930 * 118.73561 * 306.39597 * 15 12 11 25 25 N 1.34397 * 108.46159 * 180.26907 * 4 3 2 26 26 N 1.28758 * 109.52394 * 359.57938 * 25 4 3 27 27 N 1.34813 * 126.58031 * 89.99989 * 3 2 1 28 28 C 1.46505 * 126.59391 * 359.94449 * 27 3 2 29 29 C 1.52995 * 109.47124 * 89.99542 * 28 27 3 30 30 H 1.09006 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47259 * 299.99741 * 1 2 3 32 32 H 1.08997 * 109.47147 * 60.00409 * 1 2 3 33 33 H 1.08995 * 109.47259 * 240.00259 * 2 1 3 34 34 H 1.08999 * 109.47186 * 120.00136 * 2 1 3 35 35 H 0.97003 * 120.00476 * 0.02562 * 7 5 4 36 36 H 1.08994 * 109.46435 * 61.43390 * 10 8 7 37 37 H 1.09001 * 109.46294 * 181.39356 * 10 8 7 38 38 H 1.09003 * 109.49429 * 178.68736 * 11 10 8 39 39 H 1.08997 * 109.49575 * 58.59175 * 11 10 8 40 40 H 1.08997 * 109.47094 * 300.71322 * 14 12 11 41 41 H 1.08999 * 109.47198 * 60.71055 * 14 12 11 42 42 H 1.08996 * 109.47412 * 180.70823 * 14 12 11 43 43 H 0.96994 * 119.99866 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58630 * 173.39479 * 24 15 12 45 45 H 1.08999 * 109.58266 * 293.81350 * 24 15 12 46 46 H 1.08996 * 109.47181 * 209.99742 * 28 27 3 47 47 H 1.09001 * 109.46890 * 329.99937 * 28 27 3 48 48 H 1.09010 * 109.47064 * 60.00184 * 29 28 27 49 49 H 1.09006 * 109.47264 * 179.97438 * 29 28 27 50 50 H 1.08995 * 109.47978 * 300.00338 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3040 2.1882 -1.0968 5 6 2.1560 1.7661 -2.5027 6 8 1.7603 0.6462 -2.7627 7 7 2.4594 2.6218 -3.4987 8 6 2.3119 2.2028 -4.8948 9 1 2.5646 1.1465 -4.9867 10 6 3.2482 3.0306 -5.7781 11 6 2.9158 4.5167 -5.6246 12 6 1.4751 4.7635 -6.0827 13 1 1.3892 4.5618 -7.1505 14 6 1.0898 6.2176 -5.8029 15 7 0.5816 3.8653 -5.3385 16 6 -0.4941 4.3625 -4.6524 17 1 -0.4616 5.3639 -4.2492 18 6 -1.6265 3.5794 -4.4753 19 7 -1.8065 2.5057 -5.2150 20 14 -2.8948 4.0493 -3.1870 21 1 -3.9678 4.8574 -3.8203 22 1 -3.4832 2.8189 -2.5996 23 1 -2.2419 4.8454 -2.1169 24 6 0.8643 2.4235 -5.3446 25 7 2.7352 3.3905 -0.6788 26 7 2.7403 3.4222 0.6083 27 7 2.3000 2.1783 1.0826 28 6 2.1576 1.7789 2.4849 29 6 3.4676 1.1579 2.9739 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.7755 3.5151 -3.2912 36 1 4.2809 2.8564 -5.4760 37 1 3.1201 2.7357 -6.8196 38 1 3.5983 5.1071 -6.2360 39 1 3.0199 4.8066 -4.5790 40 1 1.1811 6.4187 -4.7355 41 1 1.7536 6.8822 -6.3559 42 1 0.0604 6.3878 -6.1180 43 1 -2.5975 1.9584 -5.0910 44 1 0.1869 1.9154 -4.6583 45 1 0.7306 2.0293 -6.3520 46 1 1.9224 2.6544 3.0900 47 1 1.3535 1.0484 2.5747 48 1 4.2717 1.8884 2.8840 49 1 3.3618 0.8611 4.0174 50 1 3.7029 0.2824 2.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071825396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:16 Heat of formation + Delta-G solvation = 68.609893 kcal Electronic energy + Delta-G solvation = -31222.356981 eV Core-core repulsion = 27287.004241 eV Total energy + Delta-G solvation = -3935.352740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.12717 -39.19612 -37.40745 -35.80757 -34.16696 -33.65676 -32.63549 -31.02024 -30.38954 -29.84342 -29.33560 -26.18401 -25.07716 -24.72519 -23.84927 -23.00638 -22.08593 -20.85856 -20.25365 -20.08148 -18.59788 -17.79033 -16.23191 -16.22421 -15.98268 -15.27031 -15.01611 -14.75733 -14.56826 -14.14020 -13.94605 -13.89153 -13.81106 -13.44707 -13.25679 -12.98900 -12.70764 -12.65253 -12.56562 -12.39630 -12.26240 -11.90961 -11.81473 -11.40216 -11.24247 -11.15287 -11.07270 -10.90619 -10.78686 -10.76221 -10.63902 -10.30499 -10.25004 -10.13409 -9.88194 -9.52760 -9.38614 -9.32295 -8.94464 -8.37136 -8.23073 -6.51113 -5.67508 -3.09512 1.27102 2.04547 2.08191 3.41172 3.48551 3.51719 3.70633 3.90441 4.24386 4.26220 4.51641 4.57269 4.67403 4.77782 4.91585 5.05499 5.14658 5.23879 5.39007 5.40111 5.44508 5.47275 5.54159 5.58884 5.60872 5.66932 5.69524 5.83559 5.98801 6.10562 6.14461 6.21494 6.25289 6.33830 6.42589 6.44560 6.50988 6.54081 6.61681 6.71659 6.78569 6.99534 7.14040 7.23162 7.46869 7.76219 7.92623 8.04561 8.31026 8.57283 8.85045 9.32034 9.96727 10.52833 11.40707 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.004628 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.700919 B = 6048.897663 C = 6969.439429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C 0.121 3.879 4 C -0.090 4.090 5 C 0.602 3.398 6 O -0.544 6.544 7 N -0.683 5.683 8 C 0.118 3.882 9 H 0.077 0.923 10 C -0.118 4.118 11 C -0.132 4.132 12 C 0.166 3.834 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.582 5.582 16 C -0.243 4.243 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.890 3.110 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.163 3.837 25 N -0.201 5.201 26 N -0.076 5.076 27 N -0.364 5.364 28 C 0.117 3.883 29 C -0.170 4.170 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.403 0.597 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.251 0.749 44 H 0.096 0.904 45 H 0.026 0.974 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.727 -4.341 12.326 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.016 4.016 4 C -0.230 4.230 5 C 0.386 3.614 6 O -0.422 6.422 7 N -0.332 5.332 8 C 0.013 3.987 9 H 0.095 0.905 10 C -0.156 4.156 11 C -0.171 4.171 12 C 0.060 3.940 13 H 0.042 0.958 14 C -0.194 4.194 15 N -0.305 5.305 16 C -0.373 4.373 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.721 3.279 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.036 3.964 25 N -0.074 5.074 26 N -0.055 5.055 27 N -0.151 5.151 28 C -0.005 4.005 29 C -0.228 4.228 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.239 0.761 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.044 0.956 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.795 -3.814 12.541 16.981 hybrid contribution -1.006 -0.191 0.774 1.284 sum 9.789 -4.005 13.315 17.005 Atomic orbital electron populations 1.21686 0.93060 1.02740 1.02731 1.20452 0.97365 0.87319 1.04950 1.21917 0.97023 0.96310 0.86383 1.21405 1.13816 0.91859 0.95914 1.16608 0.77686 0.84841 0.82294 1.90723 1.47640 1.20358 1.83448 1.45645 1.65379 1.16504 1.05682 1.21828 0.99857 0.97696 0.79357 0.90498 1.21686 0.97824 0.96240 0.99875 1.22078 0.98914 0.95196 1.00955 1.20453 0.88817 0.90717 0.94047 0.95789 1.21801 1.01076 0.95555 1.00944 1.44034 1.28359 1.01481 1.56667 1.19075 0.91475 1.00306 1.26455 0.91574 1.24979 0.96720 0.98633 0.98887 1.70000 1.27911 1.17638 1.38844 0.86461 0.81919 0.77368 0.82189 1.21557 1.21696 1.20672 1.21173 0.90410 0.85507 0.99292 1.74589 1.10921 1.17947 1.03905 1.81918 1.20729 0.99165 1.03665 1.50407 1.46172 1.11240 1.07236 1.21927 0.99939 1.01987 0.76600 1.22185 0.96681 1.01754 1.02186 0.91221 0.93432 0.90885 0.86443 0.90827 0.76141 0.93005 0.91087 0.92874 0.92419 0.92883 0.94456 0.92105 0.93842 0.88576 0.95648 0.87712 0.88199 0.91278 0.89916 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 37.16 0.37 -1.47 16 2 C -0.06 -0.75 5.43 -27.88 -0.15 -0.91 16 3 C 0.12 1.82 6.27 -81.88 -0.51 1.30 16 4 C -0.09 -1.65 6.99 -83.55 -0.58 -2.23 16 5 C 0.60 12.09 7.78 -12.47 -0.10 12.00 16 6 O -0.54 -11.66 14.38 5.29 0.08 -11.58 16 7 N -0.68 -13.34 4.91 -54.73 -0.27 -13.60 16 8 C 0.12 2.31 2.81 -67.81 -0.19 2.12 16 9 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 10 C -0.12 -1.94 5.59 -26.69 -0.15 -2.09 16 11 C -0.13 -2.24 5.21 -26.61 -0.14 -2.38 16 12 C 0.17 3.40 3.50 -67.60 -0.24 3.16 16 13 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 14 C -0.14 -2.60 7.94 37.16 0.30 -2.30 16 15 N -0.58 -14.21 2.91 -164.78 -0.48 -14.69 16 16 C -0.24 -6.61 8.59 -15.06 -0.13 -6.74 16 17 H 0.07 1.79 6.22 -52.48 -0.33 1.46 16 18 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 19 N -0.90 -26.54 11.22 55.49 0.62 -25.91 16 20 Si 0.89 22.56 29.58 -169.99 -5.03 17.53 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.16 3.92 4.89 -3.71 -0.02 3.90 16 25 N -0.20 -3.71 12.04 32.85 0.40 -3.31 16 26 N -0.08 -1.26 13.78 60.35 0.83 -0.42 16 27 N -0.36 -4.85 3.63 -56.85 -0.21 -5.06 16 28 C 0.12 0.94 6.87 -4.04 -0.03 0.91 16 29 C -0.17 -1.07 10.24 37.15 0.38 -0.69 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.12 1.63 6.43 -51.93 -0.33 1.30 16 34 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 35 H 0.40 7.68 6.46 -40.82 -0.26 7.41 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 40 H 0.05 1.04 7.45 -51.93 -0.39 0.65 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.10 2.70 6.11 -51.93 -0.32 2.39 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.61 7.77 -51.93 -0.40 0.21 16 48 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -32.82 394.71 -7.58 -40.39 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.19 Total: 6.05 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.28 Total: 4.67 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.90 Total: -63.00 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.82 -7.58 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.003 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds