Wall clock time and date at job start Tue Mar 31 2020 20:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46751 * 2 1 4 4 C 1.36589 * 126.58184 * 269.97523 * 3 2 1 5 5 C 1.47535 * 125.76940 * 359.97438 * 4 3 2 6 6 O 1.21588 * 119.99657 * 0.02562 * 5 4 3 7 7 N 1.34770 * 119.99798 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99764 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.52390 * 324.91203 * 8 7 5 10 10 C 1.53039 * 109.49460 * 204.83739 * 8 7 5 11 11 C 1.53049 * 109.53873 * 301.41000 * 10 8 7 12 12 C 1.53188 * 109.31275 * 298.63840 * 11 10 8 13 13 H 1.09008 * 109.70680 * 294.77820 * 12 11 10 14 14 C 1.53001 * 109.58817 * 174.42187 * 12 11 10 15 15 N 1.46928 * 108.77902 * 54.63317 * 12 11 10 16 16 C 1.36929 * 120.63393 * 126.40935 * 15 12 11 17 17 H 1.08004 * 120.00200 * 330.84899 * 16 15 12 18 18 C 1.38809 * 120.00367 * 150.84411 * 16 15 12 19 19 N 1.31626 * 119.99785 * 343.82800 * 18 16 15 20 20 Si 1.86793 * 120.00361 * 163.82161 * 18 16 15 21 21 H 1.48504 * 109.47031 * 94.31122 * 20 18 16 22 22 H 1.48496 * 109.47382 * 214.30849 * 20 18 16 23 23 H 1.48497 * 109.47172 * 334.31467 * 20 18 16 24 24 C 1.46930 * 118.73561 * 306.39597 * 15 12 11 25 25 N 1.34397 * 108.46159 * 180.26907 * 4 3 2 26 26 N 1.28758 * 109.52394 * 359.57938 * 25 4 3 27 27 N 1.34813 * 126.58031 * 89.99989 * 3 2 1 28 28 C 1.46505 * 126.59391 * 359.94449 * 27 3 2 29 29 C 1.52995 * 109.47124 * 89.99542 * 28 27 3 30 30 H 1.09006 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47259 * 299.99741 * 1 2 3 32 32 H 1.08997 * 109.47147 * 60.00409 * 1 2 3 33 33 H 1.08995 * 109.47259 * 240.00259 * 2 1 3 34 34 H 1.08999 * 109.47186 * 120.00136 * 2 1 3 35 35 H 0.97003 * 120.00476 * 0.02562 * 7 5 4 36 36 H 1.08994 * 109.46435 * 61.43390 * 10 8 7 37 37 H 1.09001 * 109.46294 * 181.39356 * 10 8 7 38 38 H 1.09003 * 109.49429 * 178.68736 * 11 10 8 39 39 H 1.08997 * 109.49575 * 58.59175 * 11 10 8 40 40 H 1.08997 * 109.47094 * 300.71322 * 14 12 11 41 41 H 1.08999 * 109.47198 * 60.71055 * 14 12 11 42 42 H 1.08996 * 109.47412 * 180.70823 * 14 12 11 43 43 H 0.96994 * 119.99866 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58630 * 173.39479 * 24 15 12 45 45 H 1.08999 * 109.58266 * 293.81350 * 24 15 12 46 46 H 1.08996 * 109.47181 * 209.99742 * 28 27 3 47 47 H 1.09001 * 109.46890 * 329.99937 * 28 27 3 48 48 H 1.09010 * 109.47064 * 60.00184 * 29 28 27 49 49 H 1.09006 * 109.47264 * 179.97438 * 29 28 27 50 50 H 1.08995 * 109.47978 * 300.00338 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3040 2.1882 -1.0968 5 6 2.1560 1.7661 -2.5027 6 8 1.7603 0.6462 -2.7627 7 7 2.4594 2.6218 -3.4987 8 6 2.3119 2.2028 -4.8948 9 1 2.5646 1.1465 -4.9867 10 6 3.2482 3.0306 -5.7781 11 6 2.9158 4.5167 -5.6246 12 6 1.4751 4.7635 -6.0827 13 1 1.3892 4.5618 -7.1505 14 6 1.0898 6.2176 -5.8029 15 7 0.5816 3.8653 -5.3385 16 6 -0.4941 4.3625 -4.6524 17 1 -0.4616 5.3639 -4.2492 18 6 -1.6265 3.5794 -4.4753 19 7 -1.8065 2.5057 -5.2150 20 14 -2.8948 4.0493 -3.1870 21 1 -3.9678 4.8574 -3.8203 22 1 -3.4832 2.8189 -2.5996 23 1 -2.2419 4.8454 -2.1169 24 6 0.8643 2.4235 -5.3446 25 7 2.7352 3.3905 -0.6788 26 7 2.7403 3.4222 0.6083 27 7 2.3000 2.1783 1.0826 28 6 2.1576 1.7789 2.4849 29 6 3.4676 1.1579 2.9739 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.7755 3.5151 -3.2912 36 1 4.2809 2.8564 -5.4760 37 1 3.1201 2.7357 -6.8196 38 1 3.5983 5.1071 -6.2360 39 1 3.0199 4.8066 -4.5790 40 1 1.1811 6.4187 -4.7355 41 1 1.7536 6.8822 -6.3559 42 1 0.0604 6.3878 -6.1180 43 1 -2.5975 1.9584 -5.0910 44 1 0.1869 1.9154 -4.6583 45 1 0.7306 2.0293 -6.3520 46 1 1.9224 2.6544 3.0900 47 1 1.3535 1.0484 2.5747 48 1 4.2717 1.8884 2.8840 49 1 3.3618 0.8611 4.0174 50 1 3.7029 0.2824 2.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071825396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:14 Heat of formation + Delta-G solvation = 46.386536 kcal Electronic energy + Delta-G solvation = -31223.320658 eV Core-core repulsion = 27287.004241 eV Total energy + Delta-G solvation = -3936.316417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.33883 -40.77999 -39.04894 -36.81031 -35.76129 -34.79439 -34.46395 -32.44102 -31.73773 -31.36935 -30.63154 -27.87154 -26.82541 -25.81402 -24.96356 -24.20509 -23.83914 -22.23607 -21.72294 -21.30894 -20.29500 -19.07623 -18.17571 -17.43671 -17.14261 -16.92538 -16.62169 -15.89375 -15.78299 -15.75665 -15.45219 -15.40165 -14.99242 -14.82922 -14.68599 -14.43647 -14.01651 -13.90776 -13.78332 -13.62843 -13.39356 -13.14981 -12.97477 -12.89516 -12.71756 -12.61953 -12.55440 -12.42468 -12.33270 -12.26128 -12.13094 -12.08564 -11.84956 -11.57251 -11.20181 -11.18554 -11.04888 -10.94983 -10.50781 -10.26475 -9.84244 -8.54366 -7.81172 -5.24187 0.10515 0.66357 1.08735 1.35678 1.38023 1.45942 2.22281 2.43776 2.49567 3.16053 3.33637 3.41604 3.53037 3.66161 3.73068 3.94726 4.03862 4.12399 4.14900 4.20724 4.22904 4.26247 4.36570 4.50357 4.51958 4.61597 4.67866 4.73215 4.76446 4.83238 4.87149 4.91341 4.97711 5.05034 5.07543 5.12069 5.16527 5.17014 5.25965 5.27514 5.34993 5.52479 5.55783 5.63814 5.70656 5.76814 5.77340 6.46329 6.59155 6.93983 7.21018 7.31179 7.95333 8.45430 9.24002 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.004628 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.700919 B = 6048.897663 C = 6969.439429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C 0.130 3.870 4 C -0.125 4.125 5 C 0.596 3.404 6 O -0.567 6.567 7 N -0.682 5.682 8 C 0.127 3.873 9 H 0.075 0.925 10 C -0.110 4.110 11 C -0.121 4.121 12 C 0.156 3.844 13 H 0.020 0.980 14 C -0.128 4.128 15 N -0.595 5.595 16 C -0.235 4.235 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.931 5.931 20 Si 0.942 3.058 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.280 1.280 24 C 0.173 3.827 25 N -0.224 5.224 26 N -0.090 5.090 27 N -0.347 5.347 28 C 0.100 3.900 29 C -0.164 4.164 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.405 0.595 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.244 0.756 44 H 0.050 0.950 45 H 0.003 0.997 46 H 0.118 0.882 47 H 0.129 0.871 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -4.116 14.447 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.009 4.009 4 C -0.265 4.265 5 C 0.380 3.620 6 O -0.446 6.446 7 N -0.331 5.331 8 C 0.021 3.979 9 H 0.093 0.907 10 C -0.148 4.148 11 C -0.160 4.160 12 C 0.050 3.950 13 H 0.037 0.963 14 C -0.186 4.186 15 N -0.319 5.319 16 C -0.366 4.366 17 H 0.084 0.916 18 C -0.243 4.243 19 N -0.578 5.578 20 Si 0.771 3.229 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.206 1.206 24 C 0.046 3.954 25 N -0.097 5.097 26 N -0.069 5.069 27 N -0.133 5.133 28 C -0.019 4.019 29 C -0.222 4.222 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.242 0.758 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.021 0.979 46 H 0.136 0.864 47 H 0.147 0.853 48 H 0.072 0.928 49 H 0.133 0.867 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.637 -3.545 14.689 19.699 hybrid contribution -1.553 -0.264 0.188 1.587 sum 11.084 -3.809 14.877 18.939 Atomic orbital electron populations 1.21658 0.93380 1.03731 1.01093 1.20533 0.96837 0.85816 1.06406 1.22254 0.95600 0.97103 0.85976 1.21354 1.16361 0.92982 0.95761 1.16973 0.77016 0.84629 0.83337 1.90698 1.48556 1.21283 1.84087 1.45627 1.65319 1.16605 1.05540 1.21606 0.97535 0.98549 0.80194 0.90674 1.21667 0.98406 0.95199 0.99533 1.21964 0.96777 0.96003 1.01291 1.20749 0.90207 0.90674 0.93346 0.96251 1.21722 1.00581 0.95393 1.00888 1.44238 1.28402 1.02050 1.57191 1.19315 0.91847 0.99960 1.25464 0.91587 1.25577 0.98687 0.99186 1.00827 1.70146 1.28225 1.18835 1.40569 0.85638 0.80237 0.76682 0.80302 1.20927 1.22380 1.20565 1.20870 0.92495 0.85140 0.96891 1.74541 1.11932 1.18398 1.04848 1.81789 1.21217 1.00872 1.03032 1.50778 1.44017 1.09766 1.08757 1.22568 1.02044 1.03544 0.73699 1.22178 0.94930 1.01017 1.04028 0.88978 0.91472 0.95983 0.88316 0.85972 0.75828 0.89893 0.90181 0.89142 0.92796 0.93704 0.90561 0.94487 0.94705 0.93194 0.97905 0.86407 0.85348 0.92811 0.86689 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.89 71.98 0.71 -2.74 16 2 C -0.06 -1.30 5.43 29.85 0.16 -1.14 16 3 C 0.13 3.79 6.27 41.72 0.26 4.05 16 4 C -0.12 -4.62 6.99 40.82 0.29 -4.33 16 5 C 0.60 24.76 7.78 86.70 0.67 25.43 16 6 O -0.57 -25.47 14.38 -3.99 -0.06 -25.53 16 7 N -0.68 -27.12 4.91 -445.34 -2.19 -29.31 16 8 C 0.13 5.04 2.81 45.07 0.13 5.16 16 9 H 0.08 3.00 7.58 -2.39 -0.02 2.98 16 10 C -0.11 -3.41 5.59 30.62 0.17 -3.24 16 11 C -0.12 -3.82 5.21 30.67 0.16 -3.66 16 12 C 0.16 6.23 3.50 44.97 0.16 6.38 16 13 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 14 C -0.13 -4.73 7.94 71.98 0.57 -4.16 16 15 N -0.60 -29.72 2.91 -675.23 -1.96 -31.68 16 16 C -0.24 -13.12 8.59 84.03 0.72 -12.40 16 17 H 0.07 3.64 6.22 -2.91 -0.02 3.62 16 18 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 19 N -0.93 -57.66 11.22 21.65 0.24 -57.42 16 20 Si 0.94 47.93 29.58 68.60 2.03 49.96 16 21 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 22 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 23 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 24 C 0.17 8.70 4.89 86.36 0.42 9.12 16 25 N -0.22 -8.35 12.04 -49.99 -0.60 -8.95 16 26 N -0.09 -2.92 13.78 37.02 0.51 -2.41 16 27 N -0.35 -8.63 3.63 -333.78 -1.21 -9.84 16 28 C 0.10 1.27 6.87 86.38 0.59 1.86 16 29 C -0.16 -1.49 10.24 71.98 0.74 -0.75 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 2.73 6.43 -2.39 -0.02 2.71 16 34 H 0.12 1.62 7.83 -2.39 -0.02 1.60 16 35 H 0.41 15.53 6.46 -92.71 -0.60 14.93 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.77 6.40 -2.39 -0.02 1.75 16 40 H 0.04 1.70 7.45 -2.39 -0.02 1.68 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 43 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.05 2.98 6.11 -2.39 -0.01 2.97 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.13 0.96 7.77 -2.39 -0.02 0.95 16 48 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -77.13 394.71 3.28 -73.85 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.34 Total: 24.12 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.17 Total: 17.21 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -5.21 Total: -139.61 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -77.13 3.28 -73.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.235 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds