Wall clock time and date at job start Tue Mar 31 2020 20:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46908 * 2 1 4 4 C 1.36593 * 126.57562 * 269.97096 * 3 2 1 5 5 C 1.47518 * 125.77409 * 359.97438 * 4 3 2 6 6 O 1.21595 * 120.00073 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00097 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52365 * 34.91976 * 8 7 5 10 10 C 1.53040 * 109.49601 * 155.00026 * 8 7 5 11 11 C 1.53041 * 109.53557 * 181.31313 * 10 8 7 12 12 C 1.53191 * 109.31394 * 298.63509 * 11 10 8 13 13 H 1.08999 * 109.58840 * 294.84801 * 12 11 10 14 14 C 1.53001 * 109.58229 * 174.56566 * 12 11 10 15 15 N 1.46921 * 108.77529 * 54.63545 * 12 11 10 16 16 C 1.36944 * 120.63036 * 126.36522 * 15 12 11 17 17 H 1.07995 * 119.99899 * 330.20373 * 16 15 12 18 18 C 1.38810 * 119.99902 * 150.20045 * 16 15 12 19 19 N 1.31620 * 119.99942 * 344.48280 * 18 16 15 20 20 Si 1.86795 * 119.99872 * 164.47877 * 18 16 15 21 21 H 1.48509 * 109.47049 * 90.00392 * 20 18 16 22 22 H 1.48497 * 109.47148 * 209.99933 * 20 18 16 23 23 H 1.48495 * 109.47222 * 330.00437 * 20 18 16 24 24 C 1.46922 * 118.74212 * 306.39104 * 15 12 11 25 25 N 1.34402 * 108.45320 * 180.24400 * 4 3 2 26 26 N 1.28757 * 109.52418 * 359.58625 * 25 4 3 27 27 N 1.34813 * 126.57996 * 89.97023 * 3 2 1 28 28 C 1.46494 * 126.59517 * 0.02562 * 27 3 2 29 29 C 1.53002 * 109.47636 * 89.99995 * 28 27 3 30 30 H 1.09006 * 109.46958 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47956 * 300.00299 * 1 2 3 32 32 H 1.09002 * 109.47004 * 60.00632 * 1 2 3 33 33 H 1.08992 * 109.47526 * 239.99422 * 2 1 3 34 34 H 1.09004 * 109.46500 * 119.99511 * 2 1 3 35 35 H 0.96998 * 119.99535 * 0.02562 * 7 5 4 36 36 H 1.09006 * 109.45988 * 61.29537 * 10 8 7 37 37 H 1.08993 * 109.46244 * 301.33527 * 10 8 7 38 38 H 1.09000 * 109.49464 * 178.68266 * 11 10 8 39 39 H 1.09002 * 109.49955 * 58.59018 * 11 10 8 40 40 H 1.09000 * 109.47456 * 60.28581 * 14 12 11 41 41 H 1.09001 * 109.46694 * 180.28450 * 14 12 11 42 42 H 1.09003 * 109.47396 * 300.27919 * 14 12 11 43 43 H 0.97005 * 119.99905 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58399 * 293.82180 * 24 15 12 45 45 H 1.08994 * 109.70847 * 173.46612 * 24 15 12 46 46 H 1.09006 * 109.46865 * 209.99633 * 28 27 3 47 47 H 1.09001 * 109.47241 * 329.99008 * 28 27 3 48 48 H 1.09001 * 109.47230 * 180.02562 * 29 28 27 49 49 H 1.09006 * 109.46699 * 299.99740 * 29 28 27 50 50 H 1.08994 * 109.47115 * 59.99699 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3041 2.1881 -1.0969 5 6 2.1562 1.7659 -2.5027 6 8 1.7605 0.6460 -2.7628 7 7 2.4597 2.6216 -3.4988 8 6 2.3123 2.2025 -4.8948 9 1 1.4533 1.5379 -4.9868 10 6 2.1021 3.4343 -5.7784 11 6 1.9153 2.9952 -7.2325 12 6 3.1771 2.2684 -7.7084 13 1 4.0155 2.9647 -7.7249 14 6 2.9473 1.7087 -9.1137 15 7 3.4684 1.1687 -6.7787 16 6 3.6336 -0.1100 -7.2403 17 1 3.1142 -0.4342 -8.1299 18 6 4.4686 -0.9893 -6.5647 19 7 5.3281 -0.5316 -5.6792 20 14 4.3723 -2.8221 -6.9123 21 1 5.3094 -3.1674 -8.0114 22 1 4.7438 -3.5780 -5.6893 23 1 2.9873 -3.1779 -7.3126 24 6 3.5786 1.4667 -5.3442 25 7 2.7348 3.3906 -0.6789 26 7 2.7396 3.4224 0.6083 27 7 2.2995 2.1785 1.0826 28 6 2.1580 1.7788 2.4848 29 6 3.4689 1.1593 2.9735 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8932 -0.5138 0.8901 35 1 2.7758 3.5149 -3.2913 36 1 2.9723 4.0866 -5.7050 37 1 1.2154 3.9733 -5.4450 38 1 1.7424 3.8712 -7.8576 39 1 1.0600 2.3231 -7.3026 40 1 2.7253 2.5269 -9.7988 41 1 3.8443 1.1878 -9.4484 42 1 2.1086 1.0127 -9.0950 43 1 5.9119 -1.1461 -5.2074 44 1 4.4498 2.0976 -5.1680 45 1 3.6804 0.5381 -4.7826 46 1 1.9220 2.6541 3.0901 47 1 1.3547 1.0476 2.5749 48 1 3.3634 0.8615 4.0167 49 1 3.7049 0.2840 2.3682 50 1 4.2721 1.8906 2.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071825397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:20 Heat of formation + Delta-G solvation = 65.783004 kcal Electronic energy + Delta-G solvation = -30292.711320 eV Core-core repulsion = 26357.235997 eV Total energy + Delta-G solvation = -3935.475323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.27553 -39.17530 -37.47809 -35.92925 -34.43479 -33.80183 -32.74068 -31.06105 -30.49160 -29.86824 -29.46171 -26.09932 -25.16095 -24.71895 -23.91826 -23.03639 -22.16252 -20.89947 -20.29011 -19.92413 -19.20663 -17.71762 -16.44189 -16.18598 -16.11377 -15.48602 -15.10589 -14.76973 -14.73399 -14.19067 -14.05586 -13.94026 -13.72142 -13.45912 -13.31737 -13.22074 -12.84137 -12.64881 -12.61160 -12.40967 -12.31302 -11.98803 -11.80291 -11.54504 -11.39873 -11.35994 -11.06230 -10.92437 -10.84790 -10.65252 -10.44391 -10.34402 -10.27306 -10.19942 -9.91365 -9.73648 -9.40062 -9.37653 -9.08671 -8.41962 -8.35294 -6.53365 -5.68109 -3.12645 1.13443 1.88237 1.94575 3.43975 3.51566 3.54026 3.55757 3.69343 4.12947 4.13818 4.45209 4.54357 4.58570 4.69043 4.77928 4.95886 5.08657 5.10737 5.24276 5.35312 5.42763 5.44910 5.49063 5.56259 5.62066 5.64753 5.71256 5.76292 5.86377 6.04265 6.06368 6.07941 6.20564 6.34671 6.37997 6.39568 6.46257 6.52019 6.58742 6.70585 6.83232 7.03656 7.11076 7.19588 7.39915 7.81639 7.86882 7.92434 8.13128 8.56317 8.68535 9.30795 9.95270 10.51404 11.39969 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003485 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.392586 B = 8032.661776 C = 9250.810570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C 0.125 3.875 4 C -0.095 4.095 5 C 0.600 3.400 6 O -0.529 6.529 7 N -0.704 5.704 8 C 0.118 3.882 9 H 0.083 0.917 10 C -0.117 4.117 11 C -0.125 4.125 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.583 5.583 16 C -0.252 4.252 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.169 3.831 25 N -0.204 5.204 26 N -0.075 5.075 27 N -0.363 5.363 28 C 0.117 3.883 29 C -0.172 4.172 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 5.402 15.302 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.012 4.012 4 C -0.235 4.235 5 C 0.383 3.617 6 O -0.404 6.404 7 N -0.353 5.353 8 C 0.013 3.987 9 H 0.102 0.898 10 C -0.155 4.155 11 C -0.165 4.165 12 C 0.058 3.942 13 H 0.042 0.958 14 C -0.194 4.194 15 N -0.307 5.307 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.042 3.958 25 N -0.077 5.077 26 N -0.054 5.054 27 N -0.149 5.149 28 C -0.004 4.004 29 C -0.231 4.231 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.111 0.889 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.315 5.897 15.606 18.640 hybrid contribution 0.011 -1.326 0.099 1.329 sum -8.304 4.571 15.705 18.344 Atomic orbital electron populations 1.21655 0.93205 1.02815 1.02127 1.20508 0.97192 0.87341 1.05598 1.21939 0.96816 0.96133 0.86321 1.21416 1.14096 0.92107 0.95860 1.16673 0.77957 0.84848 0.82228 1.90794 1.47133 1.19265 1.83249 1.45864 1.66453 1.16609 1.06407 1.22022 1.02989 0.96239 0.77457 0.89839 1.21683 1.00729 0.97036 0.96073 1.22042 1.00505 0.99478 0.94487 1.20488 0.93204 0.90321 0.90186 0.95764 1.21796 1.02205 0.99610 0.95740 1.44012 1.82726 1.03577 1.00340 1.19115 1.20727 0.86944 1.11346 0.91316 1.25075 0.95759 0.98538 0.99842 1.70018 1.22037 1.33263 1.29042 0.86355 0.77771 0.85875 0.77123 1.21544 1.21662 1.20415 1.21059 0.90193 0.99311 0.85194 1.74576 1.10740 1.18384 1.04045 1.81915 1.20572 0.99321 1.03558 1.50428 1.45904 1.11231 1.07347 1.21952 1.00103 1.01937 0.76394 1.22203 0.96585 1.01964 1.02302 0.91106 0.93435 0.91410 0.86086 0.90525 0.76629 0.92177 0.93013 0.92705 0.92079 0.94371 0.92043 0.92809 0.93808 0.96460 0.88875 0.87693 0.88143 0.89819 0.91501 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.07 -0.76 5.43 -27.88 -0.15 -0.91 16 3 C 0.13 1.70 6.27 -81.88 -0.51 1.18 16 4 C -0.10 -1.57 6.99 -83.55 -0.58 -2.15 16 5 C 0.60 11.31 7.79 -12.48 -0.10 11.22 16 6 O -0.53 -11.24 14.38 5.28 0.08 -11.17 16 7 N -0.70 -12.79 5.08 -54.73 -0.28 -13.07 16 8 C 0.12 2.37 2.60 -67.81 -0.18 2.20 16 9 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 10 C -0.12 -1.99 5.35 -26.69 -0.14 -2.13 16 11 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 12 C 0.16 3.44 3.49 -67.60 -0.24 3.20 16 13 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 14 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 15 N -0.58 -14.70 2.99 -164.78 -0.49 -15.19 16 16 C -0.25 -6.93 8.58 -15.06 -0.13 -7.06 16 17 H 0.07 1.84 6.24 -52.49 -0.33 1.51 16 18 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 19 N -0.90 -26.86 11.23 55.49 0.62 -26.24 16 20 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.17 4.18 4.86 -3.71 -0.02 4.17 16 25 N -0.20 -3.34 12.04 32.84 0.40 -2.94 16 26 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 27 N -0.36 -4.26 3.63 -56.85 -0.21 -4.47 16 28 C 0.12 0.79 6.87 -4.04 -0.03 0.76 16 29 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.73 6.43 -51.93 -0.33 1.39 16 34 H 0.08 0.63 7.82 -51.93 -0.41 0.23 16 35 H 0.40 6.49 8.29 -40.82 -0.34 6.15 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 42 H 0.05 1.04 7.42 -51.93 -0.39 0.65 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.46 7.76 -51.93 -0.40 0.05 16 48 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -33.40 398.31 -7.70 -41.09 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.36 Total: 4.66 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.26 Total: 4.27 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.87 Total: -62.17 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.40 -7.70 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.876 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds