Wall clock time and date at job start Tue Mar 31 2020 20:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46908 * 2 1 4 4 C 1.36593 * 126.57562 * 269.97096 * 3 2 1 5 5 C 1.47518 * 125.77409 * 359.97438 * 4 3 2 6 6 O 1.21595 * 120.00073 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00097 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52365 * 34.91976 * 8 7 5 10 10 C 1.53040 * 109.49601 * 155.00026 * 8 7 5 11 11 C 1.53041 * 109.53557 * 181.31313 * 10 8 7 12 12 C 1.53191 * 109.31394 * 298.63509 * 11 10 8 13 13 H 1.08999 * 109.58840 * 294.84801 * 12 11 10 14 14 C 1.53001 * 109.58229 * 174.56566 * 12 11 10 15 15 N 1.46921 * 108.77529 * 54.63545 * 12 11 10 16 16 C 1.36944 * 120.63036 * 126.36522 * 15 12 11 17 17 H 1.07995 * 119.99899 * 330.20373 * 16 15 12 18 18 C 1.38810 * 119.99902 * 150.20045 * 16 15 12 19 19 N 1.31620 * 119.99942 * 344.48280 * 18 16 15 20 20 Si 1.86795 * 119.99872 * 164.47877 * 18 16 15 21 21 H 1.48509 * 109.47049 * 90.00392 * 20 18 16 22 22 H 1.48497 * 109.47148 * 209.99933 * 20 18 16 23 23 H 1.48495 * 109.47222 * 330.00437 * 20 18 16 24 24 C 1.46922 * 118.74212 * 306.39104 * 15 12 11 25 25 N 1.34402 * 108.45320 * 180.24400 * 4 3 2 26 26 N 1.28757 * 109.52418 * 359.58625 * 25 4 3 27 27 N 1.34813 * 126.57996 * 89.97023 * 3 2 1 28 28 C 1.46494 * 126.59517 * 0.02562 * 27 3 2 29 29 C 1.53002 * 109.47636 * 89.99995 * 28 27 3 30 30 H 1.09006 * 109.46958 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47956 * 300.00299 * 1 2 3 32 32 H 1.09002 * 109.47004 * 60.00632 * 1 2 3 33 33 H 1.08992 * 109.47526 * 239.99422 * 2 1 3 34 34 H 1.09004 * 109.46500 * 119.99511 * 2 1 3 35 35 H 0.96998 * 119.99535 * 0.02562 * 7 5 4 36 36 H 1.09006 * 109.45988 * 61.29537 * 10 8 7 37 37 H 1.08993 * 109.46244 * 301.33527 * 10 8 7 38 38 H 1.09000 * 109.49464 * 178.68266 * 11 10 8 39 39 H 1.09002 * 109.49955 * 58.59018 * 11 10 8 40 40 H 1.09000 * 109.47456 * 60.28581 * 14 12 11 41 41 H 1.09001 * 109.46694 * 180.28450 * 14 12 11 42 42 H 1.09003 * 109.47396 * 300.27919 * 14 12 11 43 43 H 0.97005 * 119.99905 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58399 * 293.82180 * 24 15 12 45 45 H 1.08994 * 109.70847 * 173.46612 * 24 15 12 46 46 H 1.09006 * 109.46865 * 209.99633 * 28 27 3 47 47 H 1.09001 * 109.47241 * 329.99008 * 28 27 3 48 48 H 1.09001 * 109.47230 * 180.02562 * 29 28 27 49 49 H 1.09006 * 109.46699 * 299.99740 * 29 28 27 50 50 H 1.08994 * 109.47115 * 59.99699 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3041 2.1881 -1.0969 5 6 2.1562 1.7659 -2.5027 6 8 1.7605 0.6460 -2.7628 7 7 2.4597 2.6216 -3.4988 8 6 2.3123 2.2025 -4.8948 9 1 1.4533 1.5379 -4.9868 10 6 2.1021 3.4343 -5.7784 11 6 1.9153 2.9952 -7.2325 12 6 3.1771 2.2684 -7.7084 13 1 4.0155 2.9647 -7.7249 14 6 2.9473 1.7087 -9.1137 15 7 3.4684 1.1687 -6.7787 16 6 3.6336 -0.1100 -7.2403 17 1 3.1142 -0.4342 -8.1299 18 6 4.4686 -0.9893 -6.5647 19 7 5.3281 -0.5316 -5.6792 20 14 4.3723 -2.8221 -6.9123 21 1 5.3094 -3.1674 -8.0114 22 1 4.7438 -3.5780 -5.6893 23 1 2.9873 -3.1779 -7.3126 24 6 3.5786 1.4667 -5.3442 25 7 2.7348 3.3906 -0.6789 26 7 2.7396 3.4224 0.6083 27 7 2.2995 2.1785 1.0826 28 6 2.1580 1.7788 2.4848 29 6 3.4689 1.1593 2.9735 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8932 -0.5138 0.8901 35 1 2.7758 3.5149 -3.2913 36 1 2.9723 4.0866 -5.7050 37 1 1.2154 3.9733 -5.4450 38 1 1.7424 3.8712 -7.8576 39 1 1.0600 2.3231 -7.3026 40 1 2.7253 2.5269 -9.7988 41 1 3.8443 1.1878 -9.4484 42 1 2.1086 1.0127 -9.0950 43 1 5.9119 -1.1461 -5.2074 44 1 4.4498 2.0976 -5.1680 45 1 3.6804 0.5381 -4.7826 46 1 1.9220 2.6541 3.0901 47 1 1.3547 1.0476 2.5749 48 1 3.3634 0.8615 4.0167 49 1 3.7049 0.2840 2.3682 50 1 4.2721 1.8906 2.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071825397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:19 Heat of formation + Delta-G solvation = 42.677978 kcal Electronic energy + Delta-G solvation = -30293.713229 eV Core-core repulsion = 26357.235997 eV Total energy + Delta-G solvation = -3936.477232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.38314 -40.73027 -39.14544 -36.84635 -35.98285 -34.80502 -34.61259 -32.46429 -31.76095 -31.39310 -30.69670 -27.77501 -26.86165 -25.75017 -24.93303 -24.23734 -23.84766 -22.27936 -21.43601 -21.38142 -20.86637 -18.94139 -18.31189 -17.46391 -17.24190 -16.98417 -16.74808 -15.90010 -15.79847 -15.67943 -15.49339 -15.35341 -15.02449 -14.91544 -14.79673 -14.45708 -14.10555 -13.94856 -13.80022 -13.47240 -13.39682 -13.17042 -13.06266 -12.75641 -12.73667 -12.67786 -12.52677 -12.34034 -12.28417 -12.25539 -12.10942 -11.98504 -11.86568 -11.64213 -11.41036 -11.20992 -11.13185 -10.96305 -10.51642 -10.32027 -9.98942 -8.59511 -7.82435 -5.29396 0.07124 0.59732 1.04943 1.43425 1.46735 1.55256 2.11996 2.28365 2.53470 3.10521 3.32349 3.37593 3.50023 3.64512 3.75873 3.93408 3.96711 4.10370 4.12655 4.24296 4.25954 4.27383 4.37175 4.40841 4.49789 4.58972 4.65468 4.71878 4.72658 4.82722 4.89783 4.90335 4.92084 5.02192 5.08364 5.12173 5.16091 5.20042 5.26985 5.31479 5.34313 5.45944 5.51862 5.56655 5.62782 5.72942 5.80864 6.42182 6.51112 6.88741 7.16753 7.23555 7.91745 8.42666 9.23201 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003485 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.392586 B = 8032.661776 C = 9250.810570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C 0.135 3.865 4 C -0.126 4.126 5 C 0.596 3.404 6 O -0.561 6.561 7 N -0.700 5.700 8 C 0.134 3.866 9 H 0.061 0.939 10 C -0.110 4.110 11 C -0.116 4.116 12 C 0.152 3.848 13 H 0.018 0.982 14 C -0.128 4.128 15 N -0.602 5.602 16 C -0.251 4.251 17 H 0.076 0.924 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.183 3.817 25 N -0.222 5.222 26 N -0.085 5.085 27 N -0.346 5.346 28 C 0.103 3.897 29 C -0.169 4.169 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.048 0.952 43 H 0.244 0.756 44 H -0.009 1.009 45 H 0.045 0.955 46 H 0.125 0.875 47 H 0.133 0.867 48 H 0.116 0.884 49 H 0.057 0.943 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 6.128 16.506 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.004 4.004 4 C -0.265 4.265 5 C 0.381 3.619 6 O -0.439 6.439 7 N -0.350 5.350 8 C 0.028 3.972 9 H 0.080 0.920 10 C -0.148 4.148 11 C -0.155 4.155 12 C 0.047 3.953 13 H 0.036 0.964 14 C -0.186 4.186 15 N -0.326 5.326 16 C -0.381 4.381 17 H 0.093 0.907 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.787 3.213 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.194 1.194 24 C 0.056 3.944 25 N -0.095 5.095 26 N -0.065 5.065 27 N -0.132 5.132 28 C -0.016 4.016 29 C -0.227 4.227 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.009 0.991 45 H 0.063 0.937 46 H 0.143 0.857 47 H 0.151 0.849 48 H 0.135 0.865 49 H 0.076 0.924 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.318 6.671 16.817 20.828 hybrid contribution 0.644 -1.529 -0.183 1.669 sum -9.674 5.142 16.634 19.918 Atomic orbital electron populations 1.21632 0.91809 1.03846 1.01958 1.20568 0.98263 0.85858 1.05758 1.22203 0.95455 0.96727 0.86043 1.21211 1.16747 0.93336 0.95256 1.17057 0.77099 0.84349 0.83406 1.90769 1.48549 1.20523 1.84033 1.45763 1.66464 1.17043 1.05696 1.21592 0.99211 0.97290 0.79104 0.92031 1.21663 1.02534 0.95426 0.95152 1.21941 0.98006 1.00453 0.95091 1.20809 0.94702 0.89261 0.90539 0.96433 1.21722 1.00847 1.00698 0.95290 1.44307 1.82845 1.04259 1.01178 1.19480 1.19513 0.88225 1.10921 0.90666 1.25828 0.96062 1.02470 1.00397 1.70193 1.23330 1.34058 1.30628 0.85406 0.78116 0.81198 0.76609 1.20735 1.22516 1.19424 1.20712 0.91577 0.96989 0.85125 1.74535 1.11462 1.18607 1.04906 1.81799 1.20815 1.00915 1.02933 1.50773 1.43843 1.09810 1.08752 1.22574 1.01576 1.03796 0.73607 1.22212 0.95497 1.00899 1.04110 0.89510 0.90719 0.94376 0.89519 0.86707 0.75416 0.91395 0.89814 0.88655 0.92474 0.90308 0.94341 0.93296 0.94698 0.99100 0.93665 0.85733 0.84888 0.86535 0.92430 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.89 71.98 0.71 -1.75 16 2 C -0.07 -1.42 5.43 29.85 0.16 -1.26 16 3 C 0.14 3.59 6.27 41.72 0.26 3.85 16 4 C -0.13 -4.26 6.99 40.81 0.29 -3.97 16 5 C 0.60 23.66 7.79 86.69 0.67 24.34 16 6 O -0.56 -25.42 14.38 -4.02 -0.06 -25.48 16 7 N -0.70 -26.40 5.08 -445.34 -2.26 -28.66 16 8 C 0.13 5.53 2.60 45.07 0.12 5.65 16 9 H 0.06 2.83 7.58 -2.39 -0.02 2.81 16 10 C -0.11 -3.55 5.35 30.62 0.16 -3.39 16 11 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 12 C 0.15 6.25 3.49 44.98 0.16 6.41 16 13 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 14 C -0.13 -4.69 7.95 71.98 0.57 -4.12 16 15 N -0.60 -31.21 2.99 -675.26 -2.02 -33.23 16 16 C -0.25 -14.20 8.58 84.03 0.72 -13.48 16 17 H 0.08 4.08 6.24 -2.91 -0.02 4.06 16 18 C -0.05 -3.10 4.94 84.86 0.42 -2.68 16 19 N -0.94 -58.91 11.23 21.65 0.24 -58.66 16 20 Si 0.96 47.42 29.58 68.60 2.03 49.45 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 23 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 24 C 0.18 9.54 4.86 86.37 0.42 9.96 16 25 N -0.22 -7.35 12.04 -50.00 -0.60 -7.95 16 26 N -0.09 -2.46 13.78 37.02 0.51 -1.95 16 27 N -0.35 -7.57 3.63 -333.78 -1.21 -8.78 16 28 C 0.10 1.05 6.87 86.38 0.59 1.64 16 29 C -0.17 -1.60 10.24 71.98 0.74 -0.87 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 2.58 6.43 -2.39 -0.02 2.57 16 34 H 0.11 1.59 7.82 -2.39 -0.02 1.57 16 35 H 0.41 13.64 8.29 -92.71 -0.77 12.87 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.55 7.66 -2.39 -0.02 1.54 16 42 H 0.05 1.82 7.42 -2.39 -0.02 1.80 16 43 H 0.24 15.04 8.31 -92.70 -0.77 14.27 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.04 2.78 6.15 -2.39 -0.01 2.77 16 46 H 0.12 0.86 8.14 -2.38 -0.02 0.85 16 47 H 0.13 0.57 7.76 -2.39 -0.02 0.55 16 48 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -79.04 398.31 2.97 -76.08 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.17 Total: 22.44 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.16 Total: 16.74 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.34 Total: -139.23 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -79.04 2.97 -76.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.755 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds