Wall clock time and date at job start Tue Mar 31 2020 20:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.36600 * 126.57942 * 270.02283 * 3 2 1 5 5 C 1.47524 * 125.77088 * 359.95495 * 4 3 2 6 6 O 1.21598 * 119.99736 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00168 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.50023 * 325.00990 * 8 7 5 10 10 C 1.53033 * 109.49925 * 204.93961 * 8 7 5 11 11 C 1.53041 * 109.53998 * 178.68376 * 10 8 7 12 12 C 1.53197 * 109.30815 * 61.36866 * 11 10 8 13 13 H 1.08996 * 109.58803 * 65.29705 * 12 11 10 14 14 C 1.53003 * 109.58445 * 185.57914 * 12 11 10 15 15 N 1.46929 * 108.77522 * 305.36324 * 12 11 10 16 16 C 1.36936 * 120.63074 * 233.61389 * 15 12 11 17 17 H 1.08008 * 120.00290 * 29.54520 * 16 15 12 18 18 C 1.38809 * 120.00149 * 209.54981 * 16 15 12 19 19 N 1.31617 * 119.99908 * 16.10529 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 196.10914 * 18 16 15 21 21 H 1.48500 * 109.47249 * 94.01854 * 20 18 16 22 22 H 1.48500 * 109.47252 * 214.01639 * 20 18 16 23 23 H 1.48499 * 109.47393 * 334.01834 * 20 18 16 24 24 C 1.46929 * 118.76561 * 53.59071 * 15 12 11 25 25 N 1.34399 * 108.46151 * 179.97438 * 4 3 2 26 26 N 1.28764 * 109.52003 * 0.02562 * 25 4 3 27 27 N 1.34810 * 126.58303 * 89.71036 * 3 2 1 28 28 C 1.46501 * 126.59444 * 0.02562 * 27 3 2 29 29 C 1.52993 * 109.46917 * 90.00302 * 28 27 3 30 30 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46925 * 60.00559 * 1 2 3 32 32 H 1.08995 * 109.47176 * 299.99922 * 1 2 3 33 33 H 1.09003 * 109.47258 * 119.99814 * 2 1 3 34 34 H 1.09002 * 109.47448 * 239.99817 * 2 1 3 35 35 H 0.96996 * 119.99730 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46624 * 298.70511 * 10 8 7 37 37 H 1.09004 * 109.46363 * 58.68244 * 10 8 7 38 38 H 1.09005 * 109.50053 * 181.31618 * 11 10 8 39 39 H 1.09001 * 109.50262 * 301.41826 * 11 10 8 40 40 H 1.08996 * 109.47554 * 59.99657 * 14 12 11 41 41 H 1.09000 * 109.47386 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47364 * 299.99582 * 14 12 11 43 43 H 0.96999 * 120.00566 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.61552 * 186.64512 * 24 15 12 45 45 H 1.09003 * 109.55952 * 66.20961 * 24 15 12 46 46 H 1.09000 * 109.47083 * 210.00208 * 28 27 3 47 47 H 1.08998 * 109.46731 * 330.00433 * 28 27 3 48 48 H 1.09000 * 109.47167 * 299.99854 * 29 28 27 49 49 H 1.08999 * 109.47750 * 60.00185 * 29 28 27 50 50 H 1.09000 * 109.46926 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1545 1.7666 -2.5027 6 8 1.7588 0.6466 -2.7628 7 7 2.4561 2.6229 -3.4988 8 6 2.3090 2.2038 -4.8948 9 1 2.5618 1.1475 -4.9862 10 6 3.2453 3.0314 -5.7781 11 6 3.1164 2.5720 -7.2322 12 6 1.6779 2.7969 -7.7088 13 1 1.4621 3.8651 -7.7281 14 6 1.5056 2.2134 -9.1127 15 7 0.7610 2.1229 -6.7794 16 6 -0.1694 1.2307 -7.2414 17 1 0.0303 0.6554 -8.1334 18 6 -1.3693 1.0656 -6.5633 19 7 -1.7564 1.9637 -5.6825 20 14 -2.4346 -0.4313 -6.9008 21 1 -2.1166 -1.4972 -5.9169 22 1 -3.8666 -0.0573 -6.7797 23 1 -2.1675 -0.9296 -8.2739 24 6 0.8611 2.4237 -5.3447 25 7 2.7286 3.3929 -0.6790 26 7 2.7398 3.4224 0.6083 27 7 2.2949 2.1801 1.0825 28 6 2.1474 1.7826 2.4848 29 6 3.4562 1.1640 2.9798 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 2.7714 3.5165 -3.2914 36 1 2.9764 4.0852 -5.7051 37 1 4.2741 2.8952 -5.4444 38 1 3.8006 3.1459 -7.8572 39 1 3.3613 1.5121 -7.3020 40 1 1.7170 1.1444 -9.0903 41 1 0.4816 2.3740 -9.4498 42 1 2.1955 2.7059 -9.7980 43 1 -2.5951 1.8486 -5.2089 44 1 0.2001 1.7619 -4.7851 45 1 0.5774 3.4613 -5.1687 46 1 1.9088 2.6588 3.0877 47 1 1.3439 1.0513 2.5725 48 1 3.6949 0.2878 2.3770 49 1 4.2598 1.8951 2.8921 50 1 3.3463 0.8678 4.0230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071825398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:25 Heat of formation + Delta-G solvation = 65.844983 kcal Electronic energy + Delta-G solvation = -30332.867877 eV Core-core repulsion = 26397.395241 eV Total energy + Delta-G solvation = -3935.472636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.27337 -39.17633 -37.47985 -35.92985 -34.43395 -33.78131 -32.74244 -31.06837 -30.48924 -29.86609 -29.44823 -26.09303 -25.16244 -24.72229 -23.89272 -23.02816 -22.16600 -20.89701 -20.28985 -19.92327 -19.20811 -17.71667 -16.40132 -16.26799 -16.06262 -15.47549 -15.11116 -14.83700 -14.68890 -14.16231 -14.02226 -13.90082 -13.73178 -13.57320 -13.29805 -13.15436 -12.80479 -12.68570 -12.60570 -12.38285 -12.31543 -11.99035 -11.79793 -11.51216 -11.41014 -11.31794 -11.05843 -10.90731 -10.83019 -10.68555 -10.43852 -10.33386 -10.26450 -10.19332 -9.90929 -9.74857 -9.39476 -9.37845 -9.08418 -8.41919 -8.34970 -6.54327 -5.68086 -3.12460 1.13547 1.88279 1.94414 3.45237 3.52300 3.52734 3.55632 3.69247 4.13295 4.14270 4.43134 4.54518 4.58533 4.68908 4.78504 4.93946 5.07345 5.15456 5.28243 5.38360 5.42453 5.44943 5.48688 5.55845 5.58869 5.64722 5.75719 5.77602 5.87298 6.03934 6.06300 6.20399 6.24662 6.34525 6.37874 6.39234 6.46170 6.51946 6.58508 6.70524 6.83068 7.03515 7.11085 7.19532 7.39886 7.81102 7.86851 7.92664 8.13090 8.56003 8.68514 9.30626 9.95155 10.51196 11.39889 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003528 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.521381 B = 7933.539556 C = 9439.563253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C 0.125 3.875 4 C -0.095 4.095 5 C 0.600 3.400 6 O -0.529 6.529 7 N -0.704 5.704 8 C 0.118 3.882 9 H 0.083 0.917 10 C -0.117 4.117 11 C -0.125 4.125 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.583 5.583 16 C -0.252 4.252 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.169 3.831 25 N -0.204 5.204 26 N -0.075 5.075 27 N -0.363 5.363 28 C 0.116 3.884 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.093 0.907 45 H 0.017 0.983 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.162 -1.196 15.276 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.012 4.012 4 C -0.235 4.235 5 C 0.383 3.617 6 O -0.404 6.404 7 N -0.353 5.353 8 C 0.013 3.987 9 H 0.101 0.899 10 C -0.155 4.155 11 C -0.165 4.165 12 C 0.058 3.942 13 H 0.043 0.957 14 C -0.193 4.193 15 N -0.307 5.307 16 C -0.381 4.381 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.543 5.543 20 Si 0.728 3.272 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.204 1.204 24 C 0.042 3.958 25 N -0.077 5.077 26 N -0.054 5.054 27 N -0.149 5.149 28 C -0.005 4.005 29 C -0.229 4.229 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.036 0.964 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.199 -0.589 15.566 18.619 hybrid contribution -0.790 -1.057 0.114 1.324 sum 9.410 -1.646 15.680 18.360 Atomic orbital electron populations 1.21680 0.92922 1.02955 1.02587 1.20489 0.97478 0.87218 1.05167 1.21958 0.96674 0.96263 0.86319 1.21417 1.14357 0.91878 0.95859 1.16677 0.77855 0.84953 0.82227 1.90798 1.46456 1.19917 1.83258 1.45862 1.66543 1.16532 1.06405 1.22019 0.99989 0.99230 0.77467 0.89862 1.21681 0.98074 0.99693 0.96075 1.22043 0.99011 1.00969 0.94486 1.20492 0.88713 0.94810 0.90185 0.95747 1.21798 1.01225 1.00576 0.95747 1.44025 1.37723 1.48559 1.00347 1.19148 0.94068 1.13736 1.11179 0.91241 1.25066 0.96389 0.97833 0.99920 1.70024 1.22056 1.32974 1.29236 0.86338 0.79603 0.83227 0.77982 1.21385 1.21938 1.20423 1.21069 0.90363 0.99150 0.85184 1.74578 1.11036 1.18077 1.04047 1.81919 1.20541 0.99368 1.03556 1.50422 1.45887 1.11247 1.07339 1.21957 1.00035 1.02073 0.76407 1.22191 0.96638 1.01807 1.02273 0.91101 0.90913 0.93396 0.90675 0.86354 0.76629 0.92170 0.93010 0.92701 0.92077 0.92799 0.92054 0.94389 0.93826 0.88866 0.96444 0.87639 0.88071 0.91628 0.91251 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.06 -0.73 5.43 -27.88 -0.15 -0.88 16 3 C 0.13 1.70 6.27 -81.88 -0.51 1.18 16 4 C -0.10 -1.57 6.99 -83.55 -0.58 -2.16 16 5 C 0.60 11.31 7.78 -12.47 -0.10 11.22 16 6 O -0.53 -11.26 14.38 5.28 0.08 -11.19 16 7 N -0.70 -12.78 5.08 -54.74 -0.28 -13.06 16 8 C 0.12 2.37 2.60 -67.81 -0.18 2.19 16 9 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 10 C -0.12 -1.99 5.35 -26.69 -0.14 -2.13 16 11 C -0.13 -2.18 5.37 -26.61 -0.14 -2.33 16 12 C 0.16 3.43 3.50 -67.59 -0.24 3.19 16 13 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 14 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 15 N -0.58 -14.67 2.99 -164.76 -0.49 -15.16 16 16 C -0.25 -6.91 8.58 -15.06 -0.13 -7.04 16 17 H 0.07 1.86 6.22 -52.48 -0.33 1.53 16 18 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 19 N -0.90 -26.75 11.25 55.49 0.62 -26.13 16 20 Si 0.90 22.31 29.58 -169.99 -5.03 17.29 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.17 4.17 4.86 -3.71 -0.02 4.16 16 25 N -0.20 -3.34 12.04 32.85 0.40 -2.94 16 26 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 27 N -0.36 -4.26 3.63 -56.85 -0.21 -4.47 16 28 C 0.12 0.79 6.87 -4.04 -0.03 0.76 16 29 C -0.17 -0.93 10.24 37.15 0.38 -0.54 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 34 H 0.12 1.60 6.43 -51.93 -0.33 1.26 16 35 H 0.40 6.49 8.29 -40.82 -0.34 6.15 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 41 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.49 7.77 -51.93 -0.40 0.09 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -33.29 398.30 -7.70 -40.99 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.36 Total: 4.78 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.26 Total: 4.15 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.87 Total: -62.03 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.29 -7.70 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.834 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds