Wall clock time and date at job start Tue Mar 31 2020 20:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.36600 * 126.57942 * 270.02283 * 3 2 1 5 5 C 1.47524 * 125.77088 * 359.95495 * 4 3 2 6 6 O 1.21598 * 119.99736 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00168 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.50023 * 325.00990 * 8 7 5 10 10 C 1.53033 * 109.49925 * 204.93961 * 8 7 5 11 11 C 1.53041 * 109.53998 * 178.68376 * 10 8 7 12 12 C 1.53197 * 109.30815 * 61.36866 * 11 10 8 13 13 H 1.08996 * 109.58803 * 65.29705 * 12 11 10 14 14 C 1.53003 * 109.58445 * 185.57914 * 12 11 10 15 15 N 1.46929 * 108.77522 * 305.36324 * 12 11 10 16 16 C 1.36936 * 120.63074 * 233.61389 * 15 12 11 17 17 H 1.08008 * 120.00290 * 29.54520 * 16 15 12 18 18 C 1.38809 * 120.00149 * 209.54981 * 16 15 12 19 19 N 1.31617 * 119.99908 * 16.10529 * 18 16 15 20 20 Si 1.86798 * 120.00115 * 196.10914 * 18 16 15 21 21 H 1.48500 * 109.47249 * 94.01854 * 20 18 16 22 22 H 1.48500 * 109.47252 * 214.01639 * 20 18 16 23 23 H 1.48499 * 109.47393 * 334.01834 * 20 18 16 24 24 C 1.46929 * 118.76561 * 53.59071 * 15 12 11 25 25 N 1.34399 * 108.46151 * 179.97438 * 4 3 2 26 26 N 1.28764 * 109.52003 * 0.02562 * 25 4 3 27 27 N 1.34810 * 126.58303 * 89.71036 * 3 2 1 28 28 C 1.46501 * 126.59444 * 0.02562 * 27 3 2 29 29 C 1.52993 * 109.46917 * 90.00302 * 28 27 3 30 30 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46925 * 60.00559 * 1 2 3 32 32 H 1.08995 * 109.47176 * 299.99922 * 1 2 3 33 33 H 1.09003 * 109.47258 * 119.99814 * 2 1 3 34 34 H 1.09002 * 109.47448 * 239.99817 * 2 1 3 35 35 H 0.96996 * 119.99730 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46624 * 298.70511 * 10 8 7 37 37 H 1.09004 * 109.46363 * 58.68244 * 10 8 7 38 38 H 1.09005 * 109.50053 * 181.31618 * 11 10 8 39 39 H 1.09001 * 109.50262 * 301.41826 * 11 10 8 40 40 H 1.08996 * 109.47554 * 59.99657 * 14 12 11 41 41 H 1.09000 * 109.47386 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47364 * 299.99582 * 14 12 11 43 43 H 0.96999 * 120.00566 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.61552 * 186.64512 * 24 15 12 45 45 H 1.09003 * 109.55952 * 66.20961 * 24 15 12 46 46 H 1.09000 * 109.47083 * 210.00208 * 28 27 3 47 47 H 1.08998 * 109.46731 * 330.00433 * 28 27 3 48 48 H 1.09000 * 109.47167 * 299.99854 * 29 28 27 49 49 H 1.08999 * 109.47750 * 60.00185 * 29 28 27 50 50 H 1.09000 * 109.46926 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1545 1.7666 -2.5027 6 8 1.7588 0.6466 -2.7628 7 7 2.4561 2.6229 -3.4988 8 6 2.3090 2.2038 -4.8948 9 1 2.5618 1.1475 -4.9862 10 6 3.2453 3.0314 -5.7781 11 6 3.1164 2.5720 -7.2322 12 6 1.6779 2.7969 -7.7088 13 1 1.4621 3.8651 -7.7281 14 6 1.5056 2.2134 -9.1127 15 7 0.7610 2.1229 -6.7794 16 6 -0.1694 1.2307 -7.2414 17 1 0.0303 0.6554 -8.1334 18 6 -1.3693 1.0656 -6.5633 19 7 -1.7564 1.9637 -5.6825 20 14 -2.4346 -0.4313 -6.9008 21 1 -2.1166 -1.4972 -5.9169 22 1 -3.8666 -0.0573 -6.7797 23 1 -2.1675 -0.9296 -8.2739 24 6 0.8611 2.4237 -5.3447 25 7 2.7286 3.3929 -0.6790 26 7 2.7398 3.4224 0.6083 27 7 2.2949 2.1801 1.0825 28 6 2.1474 1.7826 2.4848 29 6 3.4562 1.1640 2.9798 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 2.7714 3.5165 -3.2914 36 1 2.9764 4.0852 -5.7051 37 1 4.2741 2.8952 -5.4444 38 1 3.8006 3.1459 -7.8572 39 1 3.3613 1.5121 -7.3020 40 1 1.7170 1.1444 -9.0903 41 1 0.4816 2.3740 -9.4498 42 1 2.1955 2.7059 -9.7980 43 1 -2.5951 1.8486 -5.2089 44 1 0.2001 1.7619 -4.7851 45 1 0.5774 3.4613 -5.1687 46 1 1.9088 2.6588 3.0877 47 1 1.3439 1.0513 2.5725 48 1 3.6949 0.2878 2.3770 49 1 4.2598 1.8951 2.8921 50 1 3.3463 0.8678 4.0230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071825398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:24 Heat of formation + Delta-G solvation = 42.799675 kcal Electronic energy + Delta-G solvation = -30333.867197 eV Core-core repulsion = 26397.395241 eV Total energy + Delta-G solvation = -3936.471955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.38256 -40.73228 -39.14717 -36.84771 -35.98550 -34.80984 -34.61335 -32.46605 -31.75969 -31.38948 -30.70280 -27.77024 -26.86539 -25.75482 -24.93626 -24.23667 -23.85258 -22.27730 -21.43591 -21.38440 -20.86731 -18.94133 -18.30556 -17.49774 -17.17169 -16.99763 -16.78734 -15.87155 -15.77948 -15.75656 -15.42152 -15.37445 -15.02053 -14.94271 -14.82071 -14.42414 -14.12889 -13.92919 -13.80351 -13.48346 -13.41928 -13.15682 -13.07012 -12.74252 -12.72042 -12.71260 -12.55749 -12.35789 -12.28625 -12.24617 -12.08333 -11.96981 -11.84788 -11.64585 -11.41447 -11.21016 -11.13570 -10.96505 -10.52147 -10.32490 -9.98538 -8.60221 -7.82126 -5.28891 0.06915 0.59630 1.04801 1.43533 1.47613 1.54285 2.11674 2.28301 2.53488 3.10474 3.32169 3.37492 3.49844 3.64635 3.75947 3.94685 3.96635 4.10356 4.13225 4.21840 4.26803 4.27474 4.35408 4.40794 4.49034 4.58689 4.65615 4.72627 4.72703 4.82806 4.87636 4.90444 4.90835 5.02172 5.08376 5.10791 5.17329 5.20080 5.26218 5.31472 5.34230 5.45917 5.51597 5.56703 5.62864 5.73282 5.80636 6.42095 6.50991 6.88645 7.16722 7.23437 7.91795 8.42660 9.23384 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003528 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.521381 B = 7933.539556 C = 9439.563253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C 0.135 3.865 4 C -0.126 4.126 5 C 0.596 3.404 6 O -0.561 6.561 7 N -0.700 5.700 8 C 0.134 3.866 9 H 0.061 0.939 10 C -0.110 4.110 11 C -0.116 4.116 12 C 0.152 3.848 13 H 0.018 0.982 14 C -0.128 4.128 15 N -0.602 5.602 16 C -0.250 4.250 17 H 0.076 0.924 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.293 1.293 22 H -0.296 1.296 23 H -0.262 1.262 24 C 0.183 3.817 25 N -0.222 5.222 26 N -0.086 5.086 27 N -0.345 5.345 28 C 0.101 3.899 29 C -0.166 4.166 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.078 0.922 43 H 0.244 0.756 44 H 0.045 0.955 45 H -0.009 1.009 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.026 -1.817 16.486 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.005 4.005 4 C -0.265 4.265 5 C 0.381 3.619 6 O -0.439 6.439 7 N -0.350 5.350 8 C 0.028 3.972 9 H 0.080 0.920 10 C -0.148 4.148 11 C -0.155 4.155 12 C 0.047 3.953 13 H 0.036 0.964 14 C -0.185 4.185 15 N -0.326 5.326 16 C -0.381 4.381 17 H 0.094 0.906 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.220 1.220 22 H -0.222 1.222 23 H -0.186 1.186 24 C 0.056 3.944 25 N -0.095 5.095 26 N -0.065 5.065 27 N -0.131 5.131 28 C -0.018 4.018 29 C -0.224 4.224 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.009 0.991 46 H 0.139 0.861 47 H 0.148 0.852 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.107 -1.181 16.783 20.728 hybrid contribution -1.356 -0.839 -0.166 1.603 sum 10.751 -2.020 16.617 19.894 Atomic orbital electron populations 1.21649 0.93041 1.03685 1.01401 1.20543 0.97168 0.85967 1.06245 1.22209 0.95362 0.96887 0.86026 1.21216 1.16985 0.93082 0.95257 1.17062 0.76896 0.84540 0.83412 1.90771 1.47798 1.21288 1.84050 1.45760 1.66459 1.17049 1.05700 1.21593 0.97656 0.98851 0.79108 0.92048 1.21662 0.98721 0.99234 0.95158 1.21943 0.96957 1.01506 0.95079 1.20813 0.89903 0.94075 0.90523 0.96397 1.21723 1.00931 1.00581 0.95313 1.44318 1.38183 1.48890 1.01175 1.19502 0.94149 1.13655 1.10749 0.90616 1.25815 0.98050 1.00384 1.00502 1.70193 1.22247 1.34854 1.30803 0.85392 0.77720 0.79960 0.78328 1.22040 1.22241 1.18587 1.20720 0.92476 0.96093 0.85124 1.74538 1.11828 1.18239 1.04904 1.81804 1.20820 1.00922 1.02931 1.50776 1.43790 1.09801 1.08751 1.22584 1.01901 1.03715 0.73588 1.22190 0.95131 1.01027 1.04023 0.89459 0.95631 0.90937 0.86017 0.88777 0.75409 0.91387 0.89808 0.88652 0.92458 0.93310 0.94354 0.90324 0.94716 0.93664 0.99084 0.86100 0.85230 0.91898 0.92760 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.89 71.98 0.71 -2.44 16 2 C -0.06 -1.30 5.43 29.85 0.16 -1.14 16 3 C 0.13 3.57 6.27 41.72 0.26 3.83 16 4 C -0.13 -4.25 6.99 40.82 0.29 -3.97 16 5 C 0.60 23.68 7.78 86.69 0.67 24.35 16 6 O -0.56 -25.49 14.38 -4.02 -0.06 -25.54 16 7 N -0.70 -26.40 5.08 -445.34 -2.26 -28.66 16 8 C 0.13 5.52 2.60 45.07 0.12 5.64 16 9 H 0.06 2.82 7.58 -2.39 -0.02 2.80 16 10 C -0.11 -3.55 5.35 30.62 0.16 -3.38 16 11 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 12 C 0.15 6.24 3.50 44.98 0.16 6.39 16 13 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 14 C -0.13 -4.69 7.95 71.98 0.57 -4.12 16 15 N -0.60 -31.14 2.99 -675.19 -2.02 -33.15 16 16 C -0.25 -14.13 8.58 84.03 0.72 -13.41 16 17 H 0.08 4.10 6.22 -2.91 -0.02 4.08 16 18 C -0.05 -3.08 4.92 84.86 0.42 -2.67 16 19 N -0.93 -58.76 11.25 21.65 0.24 -58.51 16 20 Si 0.96 47.43 29.58 68.60 2.03 49.46 16 21 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.18 9.53 4.86 86.36 0.42 9.95 16 25 N -0.22 -7.34 12.04 -49.99 -0.60 -7.94 16 26 N -0.09 -2.46 13.78 37.02 0.51 -1.95 16 27 N -0.35 -7.55 3.63 -333.79 -1.21 -8.76 16 28 C 0.10 1.03 6.87 86.38 0.59 1.62 16 29 C -0.17 -1.25 10.24 71.98 0.74 -0.51 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 1.49 7.84 -2.39 -0.02 1.47 16 34 H 0.09 2.59 6.43 -2.39 -0.02 2.57 16 35 H 0.41 13.63 8.29 -92.71 -0.77 12.87 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.81 7.40 -2.39 -0.02 1.80 16 41 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.04 2.78 6.15 -2.39 -0.01 2.77 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 47 H 0.13 0.66 7.77 -2.39 -0.02 0.64 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -79.05 398.30 2.96 -76.08 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.17 Total: 22.41 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.16 Total: 16.58 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -5.34 Total: -138.98 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -79.05 2.96 -76.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071825398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.883 kcal (2) G-P(sol) polarization free energy of solvation -79.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds