Wall clock time and date at job start Tue Mar 31 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36596 * 126.58166 * 2 1 4 4 C 1.47523 * 125.77082 * 0.02625 * 3 2 1 5 5 O 1.21592 * 119.99837 * 359.72011 * 4 3 2 6 6 N 1.34780 * 120.00011 * 179.72325 * 4 3 2 7 7 C 1.46499 * 119.99981 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.49605 * 34.93377 * 7 6 4 9 9 C 1.53036 * 109.49558 * 154.99646 * 7 6 4 10 10 C 1.53041 * 109.53810 * 181.31971 * 9 7 6 11 11 C 1.53191 * 109.31030 * 298.63571 * 10 9 7 12 12 H 1.08999 * 109.58837 * 294.84566 * 11 10 9 13 13 C 1.53001 * 109.58742 * 174.56473 * 11 10 9 14 14 N 1.46929 * 108.89396 * 54.70942 * 11 10 9 15 15 C 1.36935 * 120.63641 * 126.32653 * 14 11 10 16 16 H 1.08002 * 119.99660 * 330.33687 * 15 14 11 17 17 C 1.38810 * 120.00726 * 150.33393 * 15 14 11 18 18 N 1.31624 * 119.99291 * 344.65073 * 17 15 14 19 19 Si 1.86796 * 120.00435 * 164.64705 * 17 15 14 20 20 H 1.48503 * 109.46912 * 90.00333 * 19 17 15 21 21 H 1.48493 * 109.47167 * 209.99924 * 19 17 15 22 22 H 1.48504 * 109.47069 * 330.00392 * 19 17 15 23 23 C 1.47210 * 118.55262 * 306.45626 * 14 11 10 24 24 N 1.34397 * 108.45847 * 179.76936 * 3 2 1 25 25 N 1.28761 * 109.52515 * 0.21759 * 24 3 2 26 26 N 1.34820 * 126.57891 * 180.14934 * 2 1 3 27 27 C 1.46494 * 126.59427 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47294 * 120.26684 * 27 26 2 29 29 C 1.52996 * 109.47239 * 240.26867 * 27 26 2 30 30 H 1.09005 * 109.46503 * 90.03146 * 1 2 3 31 31 H 1.08998 * 109.47501 * 210.02806 * 1 2 3 32 32 H 1.08997 * 109.47334 * 330.03526 * 1 2 3 33 33 H 0.96994 * 119.99783 * 359.97438 * 6 4 3 34 34 H 1.08998 * 109.46275 * 61.30202 * 9 7 6 35 35 H 1.09000 * 109.46667 * 301.33878 * 9 7 6 36 36 H 1.09002 * 109.50206 * 178.68848 * 10 9 7 37 37 H 1.09000 * 109.49817 * 58.58725 * 10 9 7 38 38 H 1.09000 * 109.47403 * 60.28374 * 13 11 10 39 39 H 1.09007 * 109.47512 * 180.28589 * 13 11 10 40 40 H 1.09007 * 109.47284 * 300.28326 * 13 11 10 41 41 H 0.97004 * 119.99680 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.56266 * 293.70507 * 23 14 11 43 43 H 1.08999 * 109.64991 * 173.39780 * 23 14 11 44 44 H 1.09001 * 109.47126 * 0.26791 * 27 26 2 45 45 H 1.09002 * 109.47601 * 59.99629 * 28 27 26 46 46 H 1.08998 * 109.47620 * 180.02562 * 28 27 26 47 47 H 1.09005 * 109.47156 * 299.99990 * 28 27 26 48 48 H 1.09001 * 109.47000 * 300.00001 * 29 27 26 49 49 H 1.08996 * 109.47304 * 59.99841 * 29 27 26 50 50 H 1.09002 * 109.47497 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7628 -0.0041 6 7 2.7818 3.4987 0.0061 7 6 2.3377 4.8948 0.0061 8 1 1.4220 4.9852 0.5905 9 6 3.4259 5.7769 0.6221 10 6 2.9496 7.2310 0.6527 11 6 2.6921 7.7099 -0.7795 12 1 3.6308 7.7276 -1.3333 13 6 2.0878 9.1152 -0.7496 14 7 1.7542 6.7843 -1.4293 15 6 0.6076 7.2499 -2.0155 16 1 0.1294 8.1401 -1.6343 17 6 0.0598 6.5779 -3.0996 18 7 0.7774 5.6894 -3.7539 19 14 -1.6954 6.9345 -3.6297 20 1 -1.6974 8.0344 -4.6275 21 1 -2.2867 5.7149 -4.2364 22 1 -2.4976 7.3378 -2.4468 23 6 2.0731 5.3471 -1.4334 24 7 3.5983 0.6788 0.0051 25 7 3.6298 -0.6084 0.0037 26 7 2.3104 -1.0826 -0.0028 27 6 1.8863 -2.4849 -0.0070 28 6 2.4351 -3.1799 -1.2547 29 6 2.4230 -3.1837 1.2438 30 1 -0.3632 -0.0006 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5133 33 1 3.7293 3.2912 0.0102 34 1 4.3339 5.7048 0.0235 35 1 3.6335 5.4415 1.6382 36 1 3.7157 7.8553 1.1127 37 1 2.0280 7.2999 1.2306 38 1 2.7828 9.7994 -0.2627 39 1 1.9006 9.4521 -1.7692 40 1 1.1493 9.0955 -0.1955 41 1 0.3948 5.2201 -4.5117 42 1 2.9614 5.1721 -2.0404 43 1 1.2335 4.7865 -1.8442 44 1 0.7975 -2.5351 -0.0123 45 1 3.5239 -3.1297 -1.2495 46 1 2.1192 -4.2231 -1.2580 47 1 2.0527 -2.6821 -2.1458 48 1 3.5118 -3.1334 1.2491 49 1 2.0321 -2.6886 2.1326 50 1 2.1078 -4.2272 1.2405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071950123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:11 Heat of formation + Delta-G solvation = 67.692837 kcal Electronic energy + Delta-G solvation = -30034.861864 eV Core-core repulsion = 26099.469358 eV Total energy + Delta-G solvation = -3935.392507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.25276 -39.18163 -37.47748 -36.58962 -34.38975 -33.03452 -32.70624 -31.31294 -30.32240 -29.74253 -27.84644 -27.79742 -25.92432 -24.91422 -24.06616 -22.93212 -22.13176 -20.51079 -20.44009 -19.72211 -19.15466 -17.59152 -16.50917 -16.30617 -16.15492 -15.45573 -15.06926 -14.80770 -14.27522 -14.15091 -13.93186 -13.73528 -13.61581 -13.39484 -13.27834 -13.26052 -13.10922 -12.73654 -12.67871 -12.55026 -12.31020 -11.99752 -11.96808 -11.77557 -11.60150 -11.37950 -11.07632 -11.04387 -10.84473 -10.64986 -10.43701 -10.33826 -10.22471 -10.19574 -9.91141 -9.74691 -9.39285 -9.37685 -9.05250 -8.41312 -8.35225 -6.52952 -5.67545 -3.11891 1.15730 1.89997 1.92459 3.44403 3.51956 3.54392 3.56220 3.69893 4.00626 4.19231 4.34578 4.46507 4.57669 4.60823 4.84501 4.94652 5.04511 5.14113 5.22793 5.30070 5.41913 5.43083 5.45394 5.52853 5.58136 5.65117 5.66059 5.70529 5.77693 5.84976 6.03173 6.05899 6.20856 6.34988 6.38764 6.42838 6.46637 6.52329 6.58805 6.70890 6.83537 7.03901 7.11539 7.19977 7.40216 7.81978 7.88216 7.92942 8.14417 8.56450 8.69007 9.30785 9.95460 10.52171 11.40691 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.003166 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.381989 B = 8840.470133 C =10152.088356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.097 4.097 4 C 0.600 3.400 5 O -0.531 6.531 6 N -0.704 5.704 7 C 0.118 3.882 8 H 0.083 0.917 9 C -0.117 4.117 10 C -0.125 4.125 11 C 0.164 3.836 12 H 0.025 0.975 13 C -0.136 4.136 14 N -0.583 5.583 15 C -0.251 4.251 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.169 3.831 24 N -0.205 5.205 25 N -0.071 5.071 26 N -0.360 5.360 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.162 4.162 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.400 0.600 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -16.383 10.005 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.237 4.237 4 C 0.384 3.616 5 O -0.407 6.407 6 N -0.353 5.353 7 C 0.013 3.987 8 H 0.101 0.899 9 C -0.155 4.155 10 C -0.165 4.165 11 C 0.058 3.942 12 H 0.042 0.958 13 C -0.194 4.194 14 N -0.307 5.307 15 C -0.380 4.380 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.729 3.271 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.042 3.958 24 N -0.078 5.078 25 N -0.051 5.051 26 N -0.147 5.147 27 C 0.043 3.957 28 C -0.220 4.220 29 C -0.220 4.220 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.796 -16.682 9.846 19.740 hybrid contribution -1.312 -0.031 -0.448 1.386 sum 2.484 -16.714 9.397 19.335 Atomic orbital electron populations 1.20727 0.84826 1.05117 1.04809 1.21927 0.96231 0.86350 0.97183 1.21400 0.88835 0.95782 1.17692 1.16679 0.85856 0.82260 0.76844 1.90792 1.15811 1.83314 1.50759 1.45857 1.09470 1.06391 1.73608 1.22006 0.97244 0.77488 1.01945 0.89855 1.21682 0.98235 0.96075 0.99521 1.22041 1.00305 0.94487 0.99678 1.20493 0.92845 0.90216 0.90680 0.95762 1.21802 0.99851 0.95757 1.01948 1.44073 1.21705 1.00332 1.64568 1.19109 0.99672 1.11277 1.07992 0.91308 1.25082 0.98533 0.99844 0.95826 1.70017 1.34937 1.29004 1.20393 0.86346 0.85260 0.77120 0.78334 1.21563 1.21668 1.20430 1.21110 1.00501 0.85175 0.89044 1.74587 1.19246 1.04082 1.09909 1.81861 0.96358 1.03390 1.23446 1.50570 1.06350 1.07068 1.50758 1.21602 1.00468 0.75486 0.98174 1.22153 1.03161 1.00761 0.95970 1.22155 1.03223 1.00753 0.95869 0.88954 0.91087 0.86755 0.76609 0.92171 0.93008 0.92691 0.92083 0.94393 0.92038 0.92812 0.93822 0.96411 0.88880 0.87350 0.90713 0.90032 0.91603 0.90728 0.91767 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.40 36.00 0.34 -0.71 16 2 C 0.12 1.63 7.02 -81.87 -0.57 1.06 16 3 C -0.10 -1.61 6.99 -83.55 -0.58 -2.19 16 4 C 0.60 11.41 7.79 -12.47 -0.10 11.31 16 5 O -0.53 -11.45 14.38 5.28 0.08 -11.37 16 6 N -0.70 -12.84 5.08 -54.74 -0.28 -13.12 16 7 C 0.12 2.39 2.61 -67.82 -0.18 2.21 16 8 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 9 C -0.12 -1.99 5.35 -26.69 -0.14 -2.14 16 10 C -0.13 -2.19 5.37 -26.61 -0.14 -2.34 16 11 C 0.16 3.44 3.49 -67.60 -0.24 3.20 16 12 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 13 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 14 N -0.58 -14.75 3.00 -164.55 -0.49 -15.24 16 15 C -0.25 -6.92 8.58 -15.06 -0.13 -7.05 16 16 H 0.07 1.85 6.23 -52.49 -0.33 1.52 16 17 C 0.01 0.17 4.95 -17.43 -0.09 0.09 16 18 N -0.90 -26.93 11.23 55.49 0.62 -26.31 16 19 Si 0.90 22.41 29.58 -169.99 -5.03 17.38 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 C 0.17 4.18 4.87 -3.56 -0.02 4.16 16 24 N -0.21 -3.34 12.04 32.85 0.40 -2.95 16 25 N -0.07 -1.04 13.67 60.35 0.82 -0.21 16 26 N -0.36 -4.25 3.28 -50.41 -0.17 -4.41 16 27 C 0.14 1.06 3.68 -67.94 -0.25 0.81 16 28 C -0.16 -1.06 9.47 37.16 0.35 -0.71 16 29 C -0.16 -0.97 9.47 37.16 0.35 -0.62 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.51 7.20 -51.93 -0.37 0.14 16 32 H 0.11 1.49 6.43 -51.93 -0.33 1.15 16 33 H 0.40 6.51 8.29 -40.82 -0.34 6.17 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.26 7.65 -51.92 -0.40 0.87 16 40 H 0.05 1.04 7.42 -51.92 -0.39 0.65 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.69 6.16 -51.93 -0.32 2.37 16 44 H 0.11 0.56 6.79 -51.93 -0.35 0.21 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -33.56 396.60 -7.44 -41.01 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.27 Total: 4.48 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.10 Total: 4.77 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.91 Total: -62.25 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.56 -7.44 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071950123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.699 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds