Wall clock time and date at job start Tue Mar 31 2020 20:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47123 * 2 1 4 4 C 1.36602 * 126.58021 * 270.01982 * 3 2 1 5 5 C 1.47519 * 125.76671 * 0.04125 * 4 3 2 6 6 O 1.21599 * 120.00116 * 359.71571 * 5 4 3 7 7 N 1.34777 * 119.99981 * 179.71673 * 5 4 3 8 8 C 1.46500 * 120.00270 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47129 * 34.99540 * 8 7 5 10 10 C 1.52999 * 109.46944 * 275.00142 * 8 7 5 11 11 C 1.53005 * 109.47159 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47452 * 59.99536 * 11 10 8 13 13 C 1.53002 * 109.46817 * 300.00239 * 12 11 10 14 14 C 1.52997 * 109.47473 * 154.99797 * 8 7 5 15 15 H 1.09002 * 109.47153 * 59.99757 * 14 8 7 16 16 N 1.46500 * 109.47007 * 299.99846 * 14 8 7 17 17 C 1.36931 * 119.99971 * 154.99885 * 16 14 8 18 18 H 1.08005 * 120.00425 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00390 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99556 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00553 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00050 * 21 19 17 23 23 H 1.48500 * 109.47547 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46942 * 299.99859 * 21 19 17 25 25 N 1.34391 * 108.45823 * 179.77800 * 4 3 2 26 26 N 1.28764 * 109.52858 * 0.22742 * 25 4 3 27 27 N 1.34812 * 126.58445 * 90.19225 * 3 2 1 28 28 C 1.46508 * 126.59400 * 359.97438 * 27 3 2 29 29 C 1.52996 * 109.47056 * 270.25004 * 28 27 3 30 30 H 1.09008 * 109.46821 * 59.99980 * 1 2 3 31 31 H 1.08993 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47096 * 300.00436 * 1 2 3 33 33 H 1.08995 * 109.47743 * 239.99412 * 2 1 3 34 34 H 1.09006 * 109.46975 * 119.99256 * 2 1 3 35 35 H 0.97000 * 120.00239 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47486 * 59.99569 * 10 8 7 37 37 H 1.09002 * 109.46716 * 299.99651 * 10 8 7 38 38 H 1.09002 * 109.46935 * 299.99411 * 11 10 8 39 39 H 1.09001 * 109.46812 * 179.97438 * 11 10 8 40 40 H 1.08993 * 109.47194 * 179.97438 * 12 11 10 41 41 H 1.09002 * 109.46695 * 59.99734 * 12 11 10 42 42 H 1.08992 * 109.47063 * 299.99823 * 13 12 11 43 43 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 44 44 H 0.97004 * 120.00223 * 334.99863 * 16 14 8 45 45 H 0.96997 * 119.99679 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46882 * 30.25207 * 28 27 3 47 47 H 1.08998 * 109.47226 * 150.24791 * 28 27 3 48 48 H 1.09006 * 109.46588 * 180.02562 * 29 28 27 49 49 H 1.09005 * 109.47035 * 299.99616 * 29 28 27 50 50 H 1.08998 * 109.47276 * 59.99818 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7671 -2.5027 6 8 1.7611 0.6458 -2.7627 7 7 2.4499 2.6251 -3.4988 8 6 2.3000 2.2069 -4.8948 9 1 1.4425 1.5400 -4.9843 10 6 3.5651 1.4744 -5.3463 11 6 3.4088 1.0382 -6.8045 12 6 3.1913 2.2704 -7.6850 13 6 1.9262 3.0028 -7.2334 14 6 2.0821 3.4388 -5.7757 15 1 2.9396 4.1057 -5.6862 16 7 0.8707 4.1401 -5.3433 17 6 0.7293 5.4792 -5.5920 18 1 1.5109 6.0185 -6.1066 19 6 -0.4182 6.1440 -5.1819 20 7 -1.3706 5.4869 -4.5544 21 14 -0.6116 7.9705 -5.5218 22 1 -0.5629 8.2093 -6.9867 23 1 -1.9154 8.4385 -4.9866 24 1 0.4901 8.7162 -4.8618 25 7 2.7245 3.3943 -0.6789 26 7 2.7371 3.4233 0.6083 27 7 2.3036 2.1771 1.0825 28 6 2.1662 1.7760 2.4849 29 6 0.7566 2.1120 2.9757 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.7621 3.5197 -3.2914 36 1 3.7203 0.5968 -4.7188 37 1 4.4226 2.1413 -5.2568 38 1 2.5513 0.3714 -6.8944 39 1 4.3103 0.5167 -7.1263 40 1 3.0805 1.9596 -8.7238 41 1 4.0489 2.9371 -7.5950 42 1 1.0687 2.3361 -7.3233 43 1 1.7714 3.8810 -7.8604 44 1 0.1688 3.6560 -4.8808 45 1 -2.1723 5.9515 -4.2675 46 1 2.3359 0.7030 2.5741 47 1 2.8986 2.3112 3.0893 48 1 0.6546 1.8139 4.0192 49 1 0.5869 3.1851 2.8864 50 1 0.0242 1.5769 2.3713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085329005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:38 Heat of formation + Delta-G solvation = 45.090004 kcal Electronic energy + Delta-G solvation = -30265.794528 eV Core-core repulsion = 26329.421889 eV Total energy + Delta-G solvation = -3936.372639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20530 -39.45329 -37.66124 -35.89772 -34.01235 -33.93855 -33.48844 -31.07913 -30.73894 -30.09092 -28.91423 -27.55285 -24.79433 -24.20334 -23.66154 -23.32418 -21.82149 -21.00523 -20.26514 -20.02424 -19.46133 -17.77461 -17.06566 -16.39859 -15.95874 -15.63707 -15.14044 -14.83506 -14.72653 -14.42625 -14.13881 -14.00202 -13.77296 -13.61226 -13.42533 -13.10322 -12.88000 -12.81763 -12.60987 -12.52908 -12.40392 -12.06329 -12.02213 -11.93143 -11.43682 -11.17749 -11.01722 -10.90924 -10.84578 -10.77449 -10.68084 -10.50021 -10.27751 -10.20803 -10.12750 -9.73393 -9.58710 -9.53399 -9.04339 -8.83973 -8.45595 -6.90802 -5.70395 -2.99468 1.19677 1.94847 2.01979 3.48089 3.52693 3.53189 3.54060 3.66941 4.16960 4.18728 4.51454 4.55717 4.62721 4.70856 4.81217 4.99263 5.12271 5.13074 5.13711 5.20746 5.29693 5.33687 5.40292 5.57489 5.58837 5.60229 5.67295 5.73670 5.78247 5.85863 5.92587 5.96293 6.02152 6.03962 6.09130 6.17654 6.19347 6.39306 6.43809 6.52030 6.54593 6.58532 6.64529 6.92591 6.97325 7.15798 7.74607 7.91049 8.18478 8.46822 8.62515 9.58662 10.15146 10.50253 11.51740 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.004067 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.106156 B = 6883.148277 C = 8943.320719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C 0.122 3.878 4 C -0.096 4.096 5 C 0.605 3.395 6 O -0.548 6.548 7 N -0.690 5.690 8 C 0.142 3.858 9 H 0.086 0.914 10 C -0.124 4.124 11 C -0.113 4.113 12 C -0.120 4.120 13 C -0.132 4.132 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 N -0.195 5.195 26 N -0.072 5.072 27 N -0.364 5.364 28 C 0.118 3.882 29 C -0.175 4.175 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -13.897 11.383 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.016 4.016 4 C -0.235 4.235 5 C 0.389 3.611 6 O -0.426 6.426 7 N -0.338 5.338 8 C 0.037 3.963 9 H 0.104 0.896 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.158 4.158 13 C -0.173 4.173 14 C 0.062 3.938 15 H 0.069 0.931 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 N -0.068 5.068 26 N -0.051 5.051 27 N -0.150 5.150 28 C -0.003 4.003 29 C -0.233 4.233 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.101 0.899 49 H 0.089 0.911 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.076 -13.056 11.598 19.682 hybrid contribution -0.666 0.571 0.070 0.880 sum 8.410 -12.486 11.668 19.046 Atomic orbital electron populations 1.21737 0.93066 1.02677 1.02752 1.20442 0.97361 0.87328 1.04937 1.21904 0.96970 0.96312 0.86439 1.21302 1.14616 0.91958 0.95653 1.16673 0.77222 0.84697 0.82461 1.90713 1.48240 1.20032 1.83631 1.45704 1.65726 1.16868 1.05483 1.21342 0.97913 0.97373 0.79704 0.89616 1.21882 0.97957 1.00139 0.96348 1.21467 1.01243 0.97863 0.94513 1.21585 0.99024 0.96787 0.98401 1.22209 0.96289 0.99930 0.98903 1.20453 0.91568 0.90781 0.90989 0.93124 1.42385 1.17649 1.07116 1.68952 1.19153 1.01594 0.85150 1.31080 0.91257 1.24710 0.96952 0.97823 1.01140 1.69664 1.08616 1.35144 1.44397 0.86315 0.76843 0.85616 0.77681 1.21356 1.21847 1.21274 1.74651 1.10568 1.17674 1.03907 1.81981 1.20681 0.98800 1.03612 1.50469 1.45908 1.11279 1.07300 1.21927 1.00124 1.01770 0.76484 1.22270 0.94981 1.03817 1.02219 0.91103 0.91266 0.93063 0.86553 0.90778 0.75342 0.91875 0.91992 0.91952 0.92442 0.92725 0.92383 0.92447 0.91598 0.78153 0.93593 0.88264 0.87726 0.89894 0.91101 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.06 -0.65 5.63 -27.88 -0.16 -0.80 16 3 C 0.12 1.66 6.27 -81.87 -0.51 1.15 16 4 C -0.10 -1.63 6.99 -83.55 -0.58 -2.22 16 5 C 0.61 10.99 7.78 -12.48 -0.10 10.90 16 6 O -0.55 -10.26 14.38 5.28 0.08 -10.18 16 7 N -0.69 -12.56 4.91 -54.85 -0.27 -12.83 16 8 C 0.14 2.50 1.98 -67.93 -0.13 2.36 16 9 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 10 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 11 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 12 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 13 C -0.13 -2.34 5.50 -26.76 -0.15 -2.48 16 14 C 0.17 3.38 2.29 -67.96 -0.16 3.22 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -17.86 4.95 -53.45 -0.26 -18.12 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 21 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 N -0.20 -3.54 12.04 32.84 0.40 -3.14 16 26 N -0.07 -1.16 13.78 60.35 0.83 -0.33 16 27 N -0.36 -4.54 3.63 -56.85 -0.21 -4.75 16 28 C 0.12 0.86 7.02 -4.04 -0.03 0.83 16 29 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.47 6.12 -51.93 -0.32 0.16 16 33 H 0.12 1.40 6.42 -51.93 -0.33 1.06 16 34 H 0.07 0.53 7.18 -51.93 -0.37 0.16 16 35 H 0.41 7.77 8.29 -40.82 -0.34 7.44 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.38 10.48 7.80 -40.82 -0.32 10.16 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.10 0.46 7.16 -51.93 -0.37 0.09 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.52 6.12 -51.93 -0.32 0.20 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -33.07 400.72 -7.70 -40.77 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -8.23 Total: 14.11 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.78 Total: -1.52 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: 1.21 Total: -66.92 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.07 -7.70 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085329005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.862 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds