Wall clock time and date at job start Tue Mar 31 2020 20:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47123 * 2 1 4 4 C 1.36602 * 126.58021 * 270.01982 * 3 2 1 5 5 C 1.47519 * 125.76671 * 0.04125 * 4 3 2 6 6 O 1.21599 * 120.00116 * 359.71571 * 5 4 3 7 7 N 1.34777 * 119.99981 * 179.71673 * 5 4 3 8 8 C 1.46500 * 120.00270 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47129 * 34.99540 * 8 7 5 10 10 C 1.52999 * 109.46944 * 275.00142 * 8 7 5 11 11 C 1.53005 * 109.47159 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47452 * 59.99536 * 11 10 8 13 13 C 1.53002 * 109.46817 * 300.00239 * 12 11 10 14 14 C 1.52997 * 109.47473 * 154.99797 * 8 7 5 15 15 H 1.09002 * 109.47153 * 59.99757 * 14 8 7 16 16 N 1.46500 * 109.47007 * 299.99846 * 14 8 7 17 17 C 1.36931 * 119.99971 * 154.99885 * 16 14 8 18 18 H 1.08005 * 120.00425 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00390 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99556 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00553 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00050 * 21 19 17 23 23 H 1.48500 * 109.47547 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46942 * 299.99859 * 21 19 17 25 25 N 1.34391 * 108.45823 * 179.77800 * 4 3 2 26 26 N 1.28764 * 109.52858 * 0.22742 * 25 4 3 27 27 N 1.34812 * 126.58445 * 90.19225 * 3 2 1 28 28 C 1.46508 * 126.59400 * 359.97438 * 27 3 2 29 29 C 1.52996 * 109.47056 * 270.25004 * 28 27 3 30 30 H 1.09008 * 109.46821 * 59.99980 * 1 2 3 31 31 H 1.08993 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47096 * 300.00436 * 1 2 3 33 33 H 1.08995 * 109.47743 * 239.99412 * 2 1 3 34 34 H 1.09006 * 109.46975 * 119.99256 * 2 1 3 35 35 H 0.97000 * 120.00239 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47486 * 59.99569 * 10 8 7 37 37 H 1.09002 * 109.46716 * 299.99651 * 10 8 7 38 38 H 1.09002 * 109.46935 * 299.99411 * 11 10 8 39 39 H 1.09001 * 109.46812 * 179.97438 * 11 10 8 40 40 H 1.08993 * 109.47194 * 179.97438 * 12 11 10 41 41 H 1.09002 * 109.46695 * 59.99734 * 12 11 10 42 42 H 1.08992 * 109.47063 * 299.99823 * 13 12 11 43 43 H 1.09004 * 109.46733 * 179.97438 * 13 12 11 44 44 H 0.97004 * 120.00223 * 334.99863 * 16 14 8 45 45 H 0.96997 * 119.99679 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46882 * 30.25207 * 28 27 3 47 47 H 1.08998 * 109.47226 * 150.24791 * 28 27 3 48 48 H 1.09006 * 109.46588 * 180.02562 * 29 28 27 49 49 H 1.09005 * 109.47035 * 299.99616 * 29 28 27 50 50 H 1.08998 * 109.47276 * 59.99818 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7671 -2.5027 6 8 1.7611 0.6458 -2.7627 7 7 2.4499 2.6251 -3.4988 8 6 2.3000 2.2069 -4.8948 9 1 1.4425 1.5400 -4.9843 10 6 3.5651 1.4744 -5.3463 11 6 3.4088 1.0382 -6.8045 12 6 3.1913 2.2704 -7.6850 13 6 1.9262 3.0028 -7.2334 14 6 2.0821 3.4388 -5.7757 15 1 2.9396 4.1057 -5.6862 16 7 0.8707 4.1401 -5.3433 17 6 0.7293 5.4792 -5.5920 18 1 1.5109 6.0185 -6.1066 19 6 -0.4182 6.1440 -5.1819 20 7 -1.3706 5.4869 -4.5544 21 14 -0.6116 7.9705 -5.5218 22 1 -0.5629 8.2093 -6.9867 23 1 -1.9154 8.4385 -4.9866 24 1 0.4901 8.7162 -4.8618 25 7 2.7245 3.3943 -0.6789 26 7 2.7371 3.4233 0.6083 27 7 2.3036 2.1771 1.0825 28 6 2.1662 1.7760 2.4849 29 6 0.7566 2.1120 2.9757 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.7621 3.5197 -3.2914 36 1 3.7203 0.5968 -4.7188 37 1 4.4226 2.1413 -5.2568 38 1 2.5513 0.3714 -6.8944 39 1 4.3103 0.5167 -7.1263 40 1 3.0805 1.9596 -8.7238 41 1 4.0489 2.9371 -7.5950 42 1 1.0687 2.3361 -7.3233 43 1 1.7714 3.8810 -7.8604 44 1 0.1688 3.6560 -4.8808 45 1 -2.1723 5.9515 -4.2675 46 1 2.3359 0.7030 2.5741 47 1 2.8986 2.3112 3.0893 48 1 0.6546 1.8139 4.0192 49 1 0.5869 3.1851 2.8864 50 1 0.0242 1.5769 2.3713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085329005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:37 Heat of formation + Delta-G solvation = 21.937860 kcal Electronic energy + Delta-G solvation = -30266.798481 eV Core-core repulsion = 26329.421889 eV Total energy + Delta-G solvation = -3937.376591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.34654 -40.87452 -39.08454 -36.83594 -35.80945 -35.12061 -34.66761 -32.99239 -31.63669 -31.24689 -30.24833 -29.17932 -25.81583 -25.54105 -25.14598 -24.45218 -23.12440 -22.46896 -21.39981 -21.21976 -20.78807 -19.28023 -18.78685 -17.56357 -17.27083 -16.81991 -16.72392 -15.95552 -15.78825 -15.77930 -15.53467 -15.33380 -15.05620 -14.78156 -14.68722 -14.59707 -14.09015 -13.93819 -13.77620 -13.54773 -13.51426 -13.42501 -13.15046 -12.91884 -12.78884 -12.75393 -12.33886 -12.26838 -12.15887 -12.05950 -12.01315 -11.97724 -11.88530 -11.62039 -11.41217 -11.22523 -11.13597 -11.01473 -10.79251 -10.27067 -9.86280 -8.98652 -7.91452 -5.19641 0.11163 0.63367 1.10543 1.45647 1.48918 1.54105 2.17111 2.32113 2.56612 3.16053 3.38901 3.43443 3.52625 3.69136 3.74238 3.84895 3.94246 4.08636 4.17369 4.22119 4.27809 4.29123 4.34098 4.42630 4.45334 4.48114 4.51917 4.61153 4.67173 4.72427 4.75994 4.85682 4.94870 4.98684 5.03710 5.08207 5.17924 5.21440 5.27391 5.31627 5.33536 5.37485 5.49243 5.52854 5.53455 5.58953 5.70038 6.28550 6.49789 6.91882 7.19803 7.35189 8.09845 8.33585 9.31745 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.004067 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.106156 B = 6883.148277 C = 8943.320719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C 0.134 3.866 4 C -0.130 4.130 5 C 0.602 3.398 6 O -0.560 6.560 7 N -0.695 5.695 8 C 0.149 3.851 9 H 0.063 0.937 10 C -0.115 4.115 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.126 4.126 14 C 0.171 3.829 15 H 0.051 0.949 16 N -0.731 5.731 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.300 1.300 24 H -0.280 1.280 25 N -0.229 5.229 26 N -0.095 5.095 27 N -0.347 5.347 28 C 0.103 3.897 29 C -0.171 4.171 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.368 0.632 45 H 0.247 0.753 46 H 0.139 0.861 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.044 0.956 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -15.572 12.294 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.005 4.005 4 C -0.270 4.270 5 C 0.387 3.613 6 O -0.439 6.439 7 N -0.342 5.342 8 C 0.044 3.956 9 H 0.081 0.919 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.167 4.167 14 C 0.062 3.938 15 H 0.069 0.931 16 N -0.370 5.370 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.797 3.203 22 H -0.202 1.202 23 H -0.227 1.227 24 H -0.206 1.206 25 N -0.102 5.102 26 N -0.074 5.074 27 N -0.133 5.133 28 C -0.015 4.015 29 C -0.229 4.229 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.240 0.760 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.200 0.800 45 H 0.056 0.944 46 H 0.157 0.843 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.063 0.937 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.808 -14.736 12.501 22.142 hybrid contribution -1.171 1.006 -0.113 1.548 sum 9.637 -13.730 12.387 20.853 Atomic orbital electron populations 1.21720 0.92977 1.03860 1.01343 1.20580 0.97182 0.85335 1.06550 1.22346 0.95204 0.97251 0.85745 1.21387 1.16896 0.92773 0.95937 1.16898 0.76782 0.84543 0.83099 1.90686 1.48798 1.20369 1.84034 1.45773 1.65939 1.16672 1.05864 1.21260 0.98887 0.96085 0.79331 0.91913 1.21822 0.96234 0.99824 0.97503 1.21469 1.02655 0.97530 0.92929 1.21527 0.96881 0.96827 0.99632 1.22058 0.98266 0.99484 0.96842 1.20677 0.89309 0.91228 0.92580 0.93126 1.42550 1.18826 1.06608 1.69037 1.19547 1.01211 0.86366 1.29229 0.90471 1.25484 0.97122 1.01945 1.02106 1.69840 1.09127 1.36578 1.46576 0.85291 0.76286 0.80821 0.77860 1.20230 1.22656 1.20636 1.74605 1.11908 1.18700 1.04946 1.81843 1.21659 1.00866 1.03028 1.50837 1.43796 1.09738 1.08924 1.22564 1.00920 1.04397 0.73642 1.22277 0.94334 1.02088 1.04230 0.95315 0.88780 0.91665 0.87995 0.86018 0.75997 0.91821 0.90968 0.92257 0.89311 0.90586 0.91327 0.93631 0.93275 0.80047 0.94429 0.84306 0.86151 0.86427 0.93656 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.06 16 2 C -0.06 -1.10 5.63 29.85 0.17 -0.93 16 3 C 0.13 3.59 6.27 41.72 0.26 3.85 16 4 C -0.13 -4.58 6.99 40.82 0.29 -4.29 16 5 C 0.60 22.85 7.78 86.69 0.67 23.52 16 6 O -0.56 -21.70 14.38 -4.03 -0.06 -21.76 16 7 N -0.70 -26.52 4.91 -445.71 -2.19 -28.71 16 8 C 0.15 5.40 1.98 44.99 0.09 5.48 16 9 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 10 C -0.11 -3.23 5.50 30.60 0.17 -3.06 16 11 C -0.11 -2.57 5.92 30.60 0.18 -2.39 16 12 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 13 C -0.13 -4.44 5.50 30.58 0.17 -4.27 16 14 C 0.17 6.82 2.29 44.97 0.10 6.92 16 15 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 16 N -0.73 -37.66 4.95 -323.02 -1.60 -39.26 16 17 C -0.23 -13.04 9.93 84.03 0.83 -12.20 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 21 Si 0.97 47.75 29.55 68.60 2.03 49.77 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 N -0.23 -8.68 12.04 -50.00 -0.60 -9.28 16 26 N -0.09 -3.13 13.78 37.02 0.51 -2.62 16 27 N -0.35 -8.27 3.63 -333.76 -1.21 -9.48 16 28 C 0.10 1.19 7.02 86.38 0.61 1.80 16 29 C -0.17 -1.91 10.24 71.98 0.74 -1.18 16 30 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.08 6.12 -2.39 -0.01 1.07 16 33 H 0.10 2.34 6.42 -2.39 -0.02 2.32 16 34 H 0.12 1.18 7.18 -2.38 -0.02 1.16 16 35 H 0.41 16.23 8.29 -92.71 -0.77 15.47 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.37 21.18 7.80 -92.71 -0.72 20.46 16 45 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.14 0.57 7.16 -2.39 -0.02 0.55 16 47 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.06 0.79 6.12 -2.39 -0.01 0.78 16 Total: -1.00 -76.66 400.72 2.27 -74.39 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.53 Total: 43.77 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.64 Total: 4.61 kcal Atomic # 7 Polarization: -145.98 SS G_CDS: -4.81 Total: -150.79 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.06 Total: -21.76 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -76.66 2.27 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085329005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.329 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds