Wall clock time and date at job start Tue Mar 31 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46950 * 2 1 4 4 C 1.53000 * 109.46758 * 119.99188 * 2 1 3 5 5 C 1.53002 * 109.46966 * 65.00429 * 4 2 1 6 6 N 1.46498 * 109.47297 * 179.97438 * 5 4 2 7 7 C 1.34819 * 126.59208 * 125.29103 * 6 5 4 8 8 C 1.36597 * 106.83590 * 180.13650 * 7 6 5 9 9 C 1.47523 * 125.76738 * 179.89973 * 8 7 6 10 10 O 1.21601 * 120.00269 * 354.88271 * 9 8 7 11 11 N 1.34777 * 120.00081 * 174.88055 * 9 8 7 12 12 C 1.46498 * 119.99876 * 4.97356 * 11 9 8 13 13 C 1.46496 * 119.99984 * 184.96419 * 11 9 8 14 14 C 1.52998 * 109.47418 * 276.07895 * 13 11 9 15 15 H 1.09007 * 112.96033 * 50.81428 * 14 13 11 16 16 C 1.53947 * 113.77019 * 182.48499 * 14 13 11 17 17 C 1.53936 * 86.29063 * 137.91386 * 16 14 13 18 18 N 1.47574 * 113.77614 * 279.13007 * 14 13 11 19 19 C 1.36933 * 134.49040 * 41.06343 * 18 14 13 20 20 H 1.08007 * 120.00003 * 9.02353 * 19 18 14 21 21 C 1.38812 * 120.00123 * 189.02487 * 19 18 14 22 22 N 1.31614 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47114 * 90.00026 * 23 21 19 25 25 H 1.48503 * 109.47383 * 209.99786 * 23 21 19 26 26 H 1.48506 * 109.47379 * 330.00031 * 23 21 19 27 27 N 1.34394 * 108.46034 * 359.63551 * 8 7 6 28 28 N 1.28762 * 109.52580 * 0.22910 * 27 8 7 29 29 H 1.09003 * 109.47182 * 60.00403 * 1 2 3 30 30 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47560 * 300.00241 * 1 2 3 32 32 H 1.08996 * 109.47560 * 239.99759 * 2 1 3 33 33 H 1.08998 * 109.47082 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46849 * 299.99801 * 3 2 1 35 35 H 1.08996 * 109.47185 * 59.99529 * 3 2 1 36 36 H 1.09001 * 109.47696 * 305.00477 * 4 2 1 37 37 H 1.09000 * 109.47187 * 184.99964 * 4 2 1 38 38 H 1.09001 * 109.46874 * 59.99544 * 5 4 2 39 39 H 1.09003 * 109.47201 * 300.00077 * 5 4 2 40 40 H 1.08000 * 126.58178 * 359.97438 * 7 6 5 41 41 H 1.09000 * 109.47469 * 59.31528 * 12 11 9 42 42 H 1.09001 * 109.46821 * 299.31521 * 12 11 9 43 43 H 1.08997 * 109.47314 * 179.31904 * 12 11 9 44 44 H 1.08997 * 109.47507 * 36.08733 * 13 11 9 45 45 H 1.09005 * 109.46793 * 156.08421 * 13 11 9 46 46 H 1.09008 * 113.74352 * 252.25938 * 16 14 13 47 47 H 1.09006 * 113.74133 * 23.45632 * 16 14 13 48 48 H 1.08999 * 113.77287 * 90.69647 * 17 16 14 49 49 H 1.09007 * 113.77230 * 221.98184 * 17 16 14 50 50 H 0.97001 * 119.99899 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 -2.1953 1.1882 6 7 2.1239 -2.8860 2.3841 7 6 1.3880 -3.6099 3.2513 8 6 2.2446 -4.0662 4.2125 9 6 1.8752 -4.9030 5.3699 10 8 0.7071 -5.1674 5.5810 11 7 2.8322 -5.3747 6.1933 12 6 4.2269 -4.9683 6.0039 13 6 2.4778 -6.2936 7.2778 14 6 2.0022 -5.4916 8.4908 15 1 1.2325 -4.7609 8.2423 16 6 1.6602 -6.3612 9.7143 17 6 2.3791 -5.2886 10.5523 18 7 3.1008 -4.9433 9.3095 19 6 4.3043 -4.3532 9.0291 20 1 4.5476 -4.0791 8.0131 21 6 5.2115 -4.1075 10.0506 22 7 4.9153 -4.4421 11.2885 23 14 6.8530 -3.3019 9.6681 24 1 6.7163 -1.8267 9.7710 25 1 7.8737 -3.7733 10.6383 26 1 7.2738 -3.6652 8.2911 27 7 3.4818 -3.6288 3.9223 28 7 3.4478 -2.9255 2.8443 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6052 -0.2616 2.1371 37 1 3.1262 -0.6442 1.2953 38 1 2.0698 -2.6549 0.3005 39 1 0.5488 -2.2723 1.1422 40 1 0.3247 -3.7917 3.1979 41 1 4.3043 -3.8844 6.0888 42 1 4.5653 -5.2805 5.0159 43 1 4.8489 -5.4378 6.7660 44 1 1.6797 -6.9574 6.9454 45 1 3.3512 -6.8849 7.5530 46 1 0.5915 -6.4330 9.9168 47 1 2.1592 -7.3303 9.7172 48 1 1.7212 -4.4969 10.9106 49 1 3.0176 -5.6977 11.3354 50 1 5.5491 -4.2700 12.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085814914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:34 Heat of formation + Delta-G solvation = 117.916818 kcal Electronic energy + Delta-G solvation = -29344.078309 eV Core-core repulsion = 25410.863678 eV Total energy + Delta-G solvation = -3933.214632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.21174 -39.31075 -37.71569 -37.50481 -35.00263 -34.30094 -32.14412 -31.10070 -29.88234 -28.32393 -27.69887 -27.57610 -26.04896 -24.91514 -23.52555 -23.19826 -21.91590 -21.79260 -20.55841 -19.39488 -18.92680 -17.46076 -16.75121 -16.35054 -16.06037 -15.94951 -15.63724 -15.02342 -14.79314 -14.71681 -14.32876 -14.15159 -13.90015 -13.63284 -13.46703 -13.21784 -12.80845 -12.75347 -12.51223 -12.41876 -12.24335 -12.12387 -11.88343 -11.49482 -11.43894 -11.27875 -11.23866 -11.13269 -10.99338 -10.85254 -10.80514 -10.60235 -10.42827 -10.38673 -9.95309 -9.61803 -9.53125 -9.29574 -9.22970 -8.63593 -8.05263 -6.71274 -5.64621 -2.97974 1.11460 1.86357 1.92351 3.39190 3.44885 3.50350 3.51413 3.55623 3.94974 4.17662 4.26072 4.36590 4.47189 4.53363 4.65462 4.73160 4.75778 4.95830 5.09469 5.13555 5.19485 5.26387 5.32514 5.35664 5.43336 5.49351 5.52275 5.65134 5.71709 5.77601 5.81337 5.84358 5.91078 5.97704 6.08445 6.20401 6.21319 6.27758 6.37253 6.57248 6.60630 6.74632 6.84196 7.08648 7.40008 7.58667 7.72785 7.82278 7.98833 8.12507 8.50297 9.15894 9.83573 10.76270 11.51269 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002756 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.921977 B =10157.568038 C =11372.467384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.130 4.130 5 C 0.121 3.879 6 N -0.364 5.364 7 C 0.086 3.914 8 C -0.090 4.090 9 C 0.595 3.405 10 O -0.549 6.549 11 N -0.582 5.582 12 C 0.090 3.910 13 C 0.121 3.879 14 C 0.129 3.871 15 H 0.048 0.952 16 C -0.157 4.157 17 C 0.149 3.851 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.088 0.912 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.278 1.278 27 N -0.196 5.196 28 N -0.072 5.072 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.202 0.798 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.019 0.981 49 H 0.081 0.919 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 4.131 -23.446 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.149 5.149 7 C -0.070 4.070 8 C -0.229 4.229 9 C 0.381 3.619 10 O -0.428 6.428 11 N -0.312 5.312 12 C -0.053 4.053 13 C -0.003 4.003 14 C 0.021 3.979 15 H 0.066 0.934 16 C -0.196 4.196 17 C 0.024 3.976 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.105 0.895 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.732 3.268 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.069 5.069 28 N -0.052 5.052 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.218 0.782 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.037 0.963 49 H 0.099 0.901 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.000 4.578 -23.529 25.270 hybrid contribution -0.126 0.562 -0.036 0.577 sum -8.126 5.139 -23.564 25.450 Atomic orbital electron populations 1.21967 0.94964 1.01877 1.02383 1.21062 0.96004 0.96738 0.97379 1.21827 1.01329 0.95334 1.02068 1.21985 1.03217 0.92300 0.99339 1.22140 1.00511 0.93274 0.84045 1.50539 1.08163 1.35693 1.20475 1.23317 0.99801 0.93805 0.90112 1.21570 0.89725 1.09951 1.01685 1.16784 0.85147 0.79206 0.80765 1.90762 1.17790 1.60152 1.74067 1.47584 1.08374 1.45688 1.29523 1.22095 0.80663 1.01292 1.01246 1.21998 1.00896 0.91341 0.86023 1.22618 0.90905 0.93430 0.90925 0.93428 1.23733 0.98594 0.99109 0.98124 1.22360 0.91592 0.91791 0.91889 1.46129 1.14777 1.70523 1.01454 1.19332 0.89554 1.31636 0.94332 0.89490 1.24797 0.98220 1.02040 0.95541 1.69816 1.35487 1.52501 0.98954 0.86271 0.83979 0.79108 0.77418 1.21871 1.21780 1.20327 1.74925 1.20095 1.05693 1.06235 1.81980 0.95507 1.19502 1.08173 0.92295 0.92537 0.92301 0.90674 0.92354 0.92381 0.92457 0.90820 0.89853 0.88563 0.87773 0.78155 0.91499 0.92526 0.89259 0.90877 0.89583 0.93117 0.90720 0.96309 0.90104 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.95 37.16 0.33 -0.30 16 2 C -0.09 -0.43 2.92 -90.62 -0.26 -0.70 16 3 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 4 C -0.13 -0.83 4.89 -26.73 -0.13 -0.96 16 5 C 0.12 0.74 6.29 -4.04 -0.03 0.72 16 6 N -0.36 -3.90 3.69 -61.06 -0.23 -4.13 16 7 C 0.09 1.02 11.28 -16.83 -0.19 0.83 16 8 C -0.09 -1.43 6.76 -83.55 -0.56 -1.99 16 9 C 0.60 10.91 7.61 -12.48 -0.09 10.82 16 10 O -0.55 -10.86 16.60 5.28 0.09 -10.77 16 11 N -0.58 -10.95 2.89 -182.82 -0.53 -11.48 16 12 C 0.09 1.64 7.18 59.85 0.43 2.07 16 13 C 0.12 2.29 5.17 -4.04 -0.02 2.26 16 14 C 0.13 2.79 4.49 -66.87 -0.30 2.49 16 15 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.16 -3.11 7.86 -25.80 -0.20 -3.31 16 17 C 0.15 3.63 7.76 -2.85 -0.02 3.60 16 18 N -0.60 -15.51 3.57 -169.75 -0.61 -16.12 16 19 C -0.22 -6.06 9.76 -15.06 -0.15 -6.21 16 20 H 0.09 2.27 4.25 -52.48 -0.22 2.05 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.92 -27.53 11.28 55.49 0.63 -26.91 16 23 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 N -0.20 -3.21 8.91 32.85 0.29 -2.92 16 28 N -0.07 -1.03 13.65 60.35 0.82 -0.20 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.18 6.56 -51.93 -0.34 -0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.39 6.51 -51.93 -0.34 0.05 16 40 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 42 H 0.06 0.94 7.12 -51.93 -0.37 0.57 16 43 H 0.09 1.73 6.43 -51.93 -0.33 1.39 16 44 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 45 H 0.09 1.63 7.80 -51.93 -0.41 1.23 16 46 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 47 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 2.15 6.82 -51.92 -0.35 1.80 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.19 399.17 -7.66 -41.85 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.17 Total: -1.19 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.96 Total: 8.53 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.38 Total: -61.75 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.19 -7.66 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085814914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.771 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds