Wall clock time and date at job start Tue Mar 31 2020 18:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.95847 * 2 1 4 4 C 1.33242 * 109.83066 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.52746 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47324 * 89.99999 * 5 4 3 7 7 O 1.21277 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00181 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.48910 * 324.99504 * 9 8 6 11 11 C 1.50878 * 109.48888 * 85.04190 * 9 8 6 12 12 C 1.53893 * 110.09574 * 211.83925 * 11 9 8 13 13 N 1.47601 * 112.17060 * 319.44757 * 12 11 9 14 14 C 1.36934 * 118.64206 * 137.85993 * 13 12 11 15 15 H 1.08003 * 120.00162 * 319.02150 * 14 13 12 16 16 C 1.38818 * 119.99889 * 139.01911 * 14 13 12 17 17 N 1.31617 * 119.99708 * 156.60447 * 16 14 13 18 18 Si 1.86803 * 119.99792 * 336.60453 * 16 14 13 19 19 H 1.48498 * 109.46993 * 95.53398 * 18 16 14 20 20 H 1.48501 * 109.46790 * 215.53234 * 18 16 14 21 21 H 1.48494 * 109.47256 * 335.53106 * 18 16 14 22 22 C 1.44576 * 122.71247 * 317.88340 * 13 12 11 23 23 C 1.54862 * 109.59895 * 90.70320 * 22 13 12 24 24 C 1.53007 * 109.32812 * 168.47514 * 23 22 13 25 25 C 1.52995 * 109.33148 * 48.99734 * 23 22 13 26 26 C 1.47094 * 110.32299 * 288.72892 * 23 22 13 27 27 N 1.30717 * 108.94232 * 0.02562 * 4 3 2 28 28 N 1.34430 * 125.96645 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82007 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47122 * 90.02597 * 1 2 3 31 31 H 1.09007 * 109.46992 * 210.01990 * 1 2 3 32 32 H 1.08996 * 109.47441 * 330.02362 * 1 2 3 33 33 H 1.09002 * 109.47037 * 210.00066 * 5 4 3 34 34 H 1.08997 * 109.47260 * 329.99545 * 5 4 3 35 35 H 0.97003 * 119.99597 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.37044 * 332.03979 * 11 9 8 37 37 H 1.08999 * 109.36652 * 91.66395 * 11 9 8 38 38 H 1.09003 * 108.93555 * 198.74692 * 12 11 9 39 39 H 1.09006 * 108.85489 * 80.09172 * 12 11 9 40 40 H 0.96999 * 119.99886 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.44891 * 330.66103 * 22 13 12 42 42 H 1.09004 * 109.42851 * 210.73045 * 22 13 12 43 43 H 1.08997 * 109.47178 * 180.86725 * 24 23 22 44 44 H 1.09006 * 109.46392 * 300.86442 * 24 23 22 45 45 H 1.08997 * 109.47296 * 60.86103 * 24 23 22 46 46 H 1.09010 * 109.46873 * 299.12877 * 25 23 22 47 47 H 1.09000 * 109.47254 * 59.12714 * 25 23 22 48 48 H 1.08998 * 109.47309 * 179.13458 * 25 23 22 49 49 H 1.08998 * 108.51475 * 301.55679 * 26 23 22 50 50 H 1.08996 * 108.51531 * 184.06035 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6889 0.0006 5 6 4.7371 1.6238 0.0013 6 6 5.1304 1.9352 1.4223 7 8 4.5116 1.4465 2.3438 8 7 6.1692 2.7577 1.6693 9 6 6.5512 3.0609 3.0507 10 1 5.6579 3.1058 3.6735 11 6 7.4711 1.9821 3.5669 12 6 7.2656 1.7915 5.0801 13 7 7.0914 3.0766 5.7849 14 6 6.1314 3.1673 6.7571 15 1 5.1674 2.7034 6.6090 16 6 6.3973 3.8553 7.9330 17 7 5.4061 4.3436 8.6482 18 14 8.1618 4.0883 8.5003 19 1 8.6578 5.4116 8.0440 20 1 8.2178 4.0230 9.9828 21 1 9.0124 3.0156 7.9251 22 6 7.8923 4.2438 5.4907 23 6 7.1957 5.0893 4.3961 24 6 7.8856 6.4511 4.2924 25 6 5.7278 5.2969 4.7741 26 6 7.2717 4.4050 3.0963 27 7 3.6194 -0.6167 0.0004 28 7 2.2965 -1.0880 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3634 0.8901 0.5134 33 1 5.5744 1.1513 -0.5122 34 1 4.4702 2.5473 -0.5126 35 1 6.6639 3.1488 0.9322 36 1 7.2552 1.0460 3.0520 37 1 8.5056 2.2673 3.3760 38 1 8.1330 1.2762 5.4927 39 1 6.3797 1.1768 5.2407 40 1 5.5918 4.8240 9.4701 41 1 8.8744 3.9303 5.1370 42 1 8.0061 4.8426 6.3944 43 1 7.3874 7.0540 3.5333 44 1 7.8306 6.9603 5.2547 45 1 8.9302 6.3090 4.0158 46 1 5.2297 4.3296 4.8417 47 1 5.6688 5.8040 5.7372 48 1 5.2390 5.9048 4.0128 49 1 8.3214 4.2435 2.8510 50 1 6.8386 5.0557 2.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089381431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:20 Heat of formation + Delta-G solvation = 69.123872 kcal Electronic energy + Delta-G solvation = -30499.015738 eV Core-core repulsion = 26563.685285 eV Total energy + Delta-G solvation = -3935.330452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.26919 -39.95321 -38.46956 -34.87147 -34.23368 -33.76829 -32.50436 -32.10121 -30.90279 -29.61651 -27.92975 -27.32919 -26.47295 -25.56768 -24.11290 -22.51625 -21.60967 -20.94587 -20.05864 -19.46458 -18.41653 -18.02161 -17.04100 -16.46255 -16.09303 -15.61884 -15.28252 -15.20212 -14.57744 -14.30556 -13.99099 -13.90980 -13.57507 -13.56023 -13.28008 -13.06065 -12.98095 -12.81219 -12.46143 -12.25469 -12.01958 -11.92846 -11.86799 -11.53923 -11.23603 -11.18454 -11.06476 -10.64456 -10.46768 -10.30964 -10.25258 -10.14238 -10.01600 -9.80801 -9.74817 -9.69522 -9.58746 -9.50297 -9.35271 -8.74482 -8.37266 -6.63272 -5.91400 -3.32232 1.44962 2.46410 2.65308 2.86022 3.36757 3.45456 3.52097 3.58789 3.82996 4.35938 4.57755 4.60557 4.93862 4.99140 5.03505 5.08033 5.15338 5.19500 5.34947 5.37685 5.45093 5.50728 5.62290 5.70453 5.84396 5.96536 6.09346 6.11543 6.14297 6.15728 6.25346 6.26661 6.34718 6.39660 6.49569 6.59770 6.63342 6.73532 6.83671 6.88837 6.91694 6.91969 6.95142 7.00997 7.25264 7.63584 7.74387 7.97108 8.19724 8.47504 8.51385 9.15311 9.82179 10.20403 11.24033 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.003075 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.298816 B = 9102.787215 C = 9669.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.530 5.530 4 C 0.253 3.747 5 C -0.050 4.050 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.726 5.726 9 C 0.149 3.851 10 H 0.111 0.889 11 C -0.139 4.139 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.264 4.264 15 H 0.076 0.924 16 C 0.041 3.959 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.157 3.843 23 C -0.087 4.087 24 C -0.136 4.136 25 C -0.120 4.120 26 C -0.097 4.097 27 N -0.305 5.305 28 N -0.483 5.483 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.393 0.607 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.261 0.739 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.021 0.979 49 H 0.052 0.948 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -5.003 -21.669 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.259 5.259 4 C -0.030 4.030 5 C -0.093 4.093 6 C 0.300 3.700 7 O -0.395 6.395 8 N -0.378 5.378 9 C 0.046 3.954 10 H 0.129 0.871 11 C -0.179 4.179 12 C 0.026 3.974 13 N -0.323 5.323 14 C -0.392 4.392 15 H 0.093 0.907 16 C -0.159 4.159 17 N -0.537 5.537 18 Si 0.700 3.300 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.196 1.196 22 C 0.031 3.969 23 C -0.090 4.090 24 C -0.194 4.194 25 C -0.177 4.177 26 C -0.135 4.135 27 N -0.134 5.134 28 N -0.201 5.201 29 H 0.284 0.716 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.070 0.930 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.629 -5.332 -20.834 21.666 hybrid contribution 0.998 -0.242 0.099 1.032 sum -1.631 -5.574 -20.735 21.533 Atomic orbital electron populations 1.20393 0.83657 1.05255 1.04327 1.24360 0.96607 0.82766 0.95808 1.70300 1.01278 1.29530 1.24773 1.23243 0.92643 0.89702 0.97411 1.19920 0.93678 0.98764 0.96890 1.20070 0.80344 0.79349 0.90229 1.90789 1.52314 1.50489 1.45880 1.46203 1.32937 1.49043 1.09574 1.20601 1.00309 0.93725 0.80776 0.87100 1.22210 0.98550 0.98474 0.98629 1.21180 0.99198 0.88368 0.88698 1.43872 1.41958 1.05036 1.41451 1.18743 0.92735 1.34144 0.93625 0.90665 1.25468 0.96173 0.98165 0.96097 1.69895 1.31002 1.36337 1.16503 0.87037 0.88193 0.77880 0.76933 1.21423 1.23118 1.19556 1.21152 0.91944 0.88347 0.95498 1.20315 0.98374 0.94608 0.95720 1.21835 0.99313 0.96879 1.01371 1.21736 0.93771 1.02541 0.99618 1.20618 0.99346 0.95156 0.98381 1.77956 0.96718 1.12230 1.26511 1.47912 1.04268 1.09969 1.57947 0.71582 0.89095 0.89858 0.88191 0.86725 0.86214 0.77369 0.92133 0.92870 0.96420 0.92221 0.92908 0.94949 0.92770 0.93444 0.92691 0.93621 0.90377 0.92408 0.95992 0.92953 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.28 3.11 8.24 -155.69 -1.28 1.83 16 3 N -0.53 -7.61 11.19 -8.16 -0.09 -7.70 16 4 C 0.25 3.64 6.63 -156.85 -1.04 2.60 16 5 C -0.05 -0.57 6.33 -29.04 -0.18 -0.75 16 6 C 0.52 7.88 7.64 -10.98 -0.08 7.79 16 7 O -0.52 -10.77 15.70 5.56 0.09 -10.68 16 8 N -0.73 -9.64 4.93 -55.06 -0.27 -9.91 16 9 C 0.15 2.48 1.98 -69.21 -0.14 2.35 16 10 H 0.11 2.36 4.73 -51.93 -0.25 2.12 16 11 C -0.14 -2.37 5.38 -27.33 -0.15 -2.52 16 12 C 0.15 3.16 6.24 -2.97 -0.02 3.14 16 13 N -0.60 -14.06 1.38 -172.12 -0.24 -14.30 16 14 C -0.26 -7.27 7.31 -15.06 -0.11 -7.38 16 15 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 16 C 0.04 1.18 5.22 -17.43 -0.09 1.09 16 17 N -0.90 -27.14 13.97 55.49 0.78 -26.37 16 18 Si 0.87 22.29 25.27 -169.99 -4.30 17.99 16 19 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 20 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.16 3.36 3.56 -4.09 -0.01 3.35 16 23 C -0.09 -1.58 0.72 -156.36 -0.11 -1.70 16 24 C -0.14 -2.15 8.37 37.16 0.31 -1.84 16 25 C -0.12 -2.49 7.02 37.15 0.26 -2.23 16 26 C -0.10 -1.49 3.40 -29.79 -0.10 -1.59 16 27 N -0.31 -4.35 12.80 32.42 0.41 -3.93 16 28 N -0.48 -5.16 7.45 32.62 0.24 -4.92 16 29 H 0.44 2.91 8.96 -182.34 -1.63 1.28 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.39 3.68 8.60 -40.82 -0.35 3.33 16 36 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 37 H 0.05 0.83 7.32 -51.93 -0.38 0.45 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.35 7.89 -51.93 -0.41 0.94 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.05 1.29 3.56 -51.93 -0.19 1.10 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.85 4.49 -51.92 -0.23 1.62 16 47 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 50 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -37.03 384.90 -9.24 -46.27 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -9.29 Total: 3.68 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.37 Total: 4.07 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: 0.83 Total: -67.13 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.30 Total: 17.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.03 -9.24 -46.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089381431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.396 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds