Wall clock time and date at job start Tue Mar 31 2020 18:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.95847 * 2 1 4 4 C 1.33242 * 109.83066 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.52746 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47324 * 89.99999 * 5 4 3 7 7 O 1.21277 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00181 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.48910 * 324.99504 * 9 8 6 11 11 C 1.50878 * 109.48888 * 85.04190 * 9 8 6 12 12 C 1.53893 * 110.09574 * 211.83925 * 11 9 8 13 13 N 1.47601 * 112.17060 * 319.44757 * 12 11 9 14 14 C 1.36934 * 118.64206 * 137.85993 * 13 12 11 15 15 H 1.08003 * 120.00162 * 319.02150 * 14 13 12 16 16 C 1.38818 * 119.99889 * 139.01911 * 14 13 12 17 17 N 1.31617 * 119.99708 * 156.60447 * 16 14 13 18 18 Si 1.86803 * 119.99792 * 336.60453 * 16 14 13 19 19 H 1.48498 * 109.46993 * 95.53398 * 18 16 14 20 20 H 1.48501 * 109.46790 * 215.53234 * 18 16 14 21 21 H 1.48494 * 109.47256 * 335.53106 * 18 16 14 22 22 C 1.44576 * 122.71247 * 317.88340 * 13 12 11 23 23 C 1.54862 * 109.59895 * 90.70320 * 22 13 12 24 24 C 1.53007 * 109.32812 * 168.47514 * 23 22 13 25 25 C 1.52995 * 109.33148 * 48.99734 * 23 22 13 26 26 C 1.47094 * 110.32299 * 288.72892 * 23 22 13 27 27 N 1.30717 * 108.94232 * 0.02562 * 4 3 2 28 28 N 1.34430 * 125.96645 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82007 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.47122 * 90.02597 * 1 2 3 31 31 H 1.09007 * 109.46992 * 210.01990 * 1 2 3 32 32 H 1.08996 * 109.47441 * 330.02362 * 1 2 3 33 33 H 1.09002 * 109.47037 * 210.00066 * 5 4 3 34 34 H 1.08997 * 109.47260 * 329.99545 * 5 4 3 35 35 H 0.97003 * 119.99597 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.37044 * 332.03979 * 11 9 8 37 37 H 1.08999 * 109.36652 * 91.66395 * 11 9 8 38 38 H 1.09003 * 108.93555 * 198.74692 * 12 11 9 39 39 H 1.09006 * 108.85489 * 80.09172 * 12 11 9 40 40 H 0.96999 * 119.99886 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.44891 * 330.66103 * 22 13 12 42 42 H 1.09004 * 109.42851 * 210.73045 * 22 13 12 43 43 H 1.08997 * 109.47178 * 180.86725 * 24 23 22 44 44 H 1.09006 * 109.46392 * 300.86442 * 24 23 22 45 45 H 1.08997 * 109.47296 * 60.86103 * 24 23 22 46 46 H 1.09010 * 109.46873 * 299.12877 * 25 23 22 47 47 H 1.09000 * 109.47254 * 59.12714 * 25 23 22 48 48 H 1.08998 * 109.47309 * 179.13458 * 25 23 22 49 49 H 1.08998 * 108.51475 * 301.55679 * 26 23 22 50 50 H 1.08996 * 108.51531 * 184.06035 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6889 0.0006 5 6 4.7371 1.6238 0.0013 6 6 5.1304 1.9352 1.4223 7 8 4.5116 1.4465 2.3438 8 7 6.1692 2.7577 1.6693 9 6 6.5512 3.0609 3.0507 10 1 5.6579 3.1058 3.6735 11 6 7.4711 1.9821 3.5669 12 6 7.2656 1.7915 5.0801 13 7 7.0914 3.0766 5.7849 14 6 6.1314 3.1673 6.7571 15 1 5.1674 2.7034 6.6090 16 6 6.3973 3.8553 7.9330 17 7 5.4061 4.3436 8.6482 18 14 8.1618 4.0883 8.5003 19 1 8.6578 5.4116 8.0440 20 1 8.2178 4.0230 9.9828 21 1 9.0124 3.0156 7.9251 22 6 7.8923 4.2438 5.4907 23 6 7.1957 5.0893 4.3961 24 6 7.8856 6.4511 4.2924 25 6 5.7278 5.2969 4.7741 26 6 7.2717 4.4050 3.0963 27 7 3.6194 -0.6167 0.0004 28 7 2.2965 -1.0880 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3634 0.8901 0.5134 33 1 5.5744 1.1513 -0.5122 34 1 4.4702 2.5473 -0.5126 35 1 6.6639 3.1488 0.9322 36 1 7.2552 1.0460 3.0520 37 1 8.5056 2.2673 3.3760 38 1 8.1330 1.2762 5.4927 39 1 6.3797 1.1768 5.2407 40 1 5.5918 4.8240 9.4701 41 1 8.8744 3.9303 5.1370 42 1 8.0061 4.8426 6.3944 43 1 7.3874 7.0540 3.5333 44 1 7.8306 6.9603 5.2547 45 1 8.9302 6.3090 4.0158 46 1 5.2297 4.3296 4.8417 47 1 5.6688 5.8040 5.7372 48 1 5.2390 5.9048 4.0128 49 1 8.3214 4.2435 2.8510 50 1 6.8386 5.0557 2.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089381431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:19 Heat of formation + Delta-G solvation = 41.445965 kcal Electronic energy + Delta-G solvation = -30500.215942 eV Core-core repulsion = 26563.685285 eV Total energy + Delta-G solvation = -3936.530657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.16885 -41.30626 -39.89860 -36.39409 -35.83704 -34.69442 -33.93153 -33.36149 -32.46588 -30.66336 -28.95720 -28.44774 -28.18091 -27.29841 -25.76543 -23.95831 -22.74547 -22.02503 -21.17961 -20.98534 -19.98825 -18.91753 -18.54727 -18.03835 -17.57443 -16.93904 -16.52872 -16.46117 -16.06597 -15.48085 -15.43813 -15.20047 -15.10499 -14.78324 -14.57467 -14.47797 -14.05406 -13.74806 -13.64183 -13.62944 -13.55140 -13.16467 -13.13697 -12.89759 -12.75940 -12.73744 -12.46487 -12.36489 -12.33144 -11.86088 -11.75379 -11.62248 -11.39366 -11.26871 -11.23201 -11.10839 -11.08403 -10.82814 -10.53405 -10.43538 -10.01096 -8.59282 -8.15310 -5.52694 0.55842 1.30718 1.41117 1.52727 1.64897 1.70148 1.74077 2.39639 2.44928 3.02732 3.09975 3.40334 3.53830 3.78051 3.83111 3.97534 3.99105 4.16195 4.27454 4.37056 4.41129 4.42814 4.53400 4.63600 4.68766 4.75162 4.78255 4.80015 4.84661 4.89177 4.95820 5.02807 5.03513 5.08619 5.16983 5.20608 5.23385 5.24987 5.34535 5.40958 5.42842 5.46910 5.59444 5.75926 5.87542 6.03871 6.19673 6.22782 6.67475 7.06478 7.11648 7.39535 7.72708 8.08781 9.05028 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.003075 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.298816 B = 9102.787215 C = 9669.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.570 5.570 4 C 0.234 3.766 5 C -0.041 4.041 6 C 0.514 3.486 7 O -0.585 6.585 8 N -0.705 5.705 9 C 0.154 3.846 10 H 0.057 0.943 11 C -0.125 4.125 12 C 0.150 3.850 13 N -0.606 5.606 14 C -0.244 4.244 15 H 0.019 0.981 16 C -0.012 4.012 17 N -0.946 5.946 18 Si 0.938 3.062 19 H -0.269 1.269 20 H -0.312 1.312 21 H -0.262 1.262 22 C 0.148 3.852 23 C -0.081 4.081 24 C -0.131 4.131 25 C -0.108 4.108 26 C -0.094 4.094 27 N -0.338 5.338 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.017 0.983 48 H 0.043 0.957 49 H 0.088 0.912 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -4.307 -25.283 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.301 5.301 4 C -0.049 4.049 5 C -0.083 4.083 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.358 5.358 9 C 0.049 3.951 10 H 0.075 0.925 11 C -0.165 4.165 12 C 0.025 3.975 13 N -0.329 5.329 14 C -0.374 4.374 15 H 0.037 0.963 16 C -0.208 4.208 17 N -0.590 5.590 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.241 1.241 21 H -0.186 1.186 22 C 0.022 3.978 23 C -0.084 4.084 24 C -0.189 4.189 25 C -0.166 4.166 26 C -0.131 4.131 27 N -0.167 5.167 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.149 -4.639 -24.530 24.965 hybrid contribution -0.044 -0.542 1.191 1.309 sum 0.105 -5.181 -23.339 23.907 Atomic orbital electron populations 1.20635 0.80244 1.06161 1.06286 1.25228 0.98316 0.82124 0.93798 1.70298 1.01861 1.31319 1.26577 1.23783 0.93539 0.90178 0.97381 1.20040 0.94055 0.99963 0.94264 1.20778 0.79690 0.78337 0.91223 1.90777 1.54488 1.53006 1.48192 1.45900 1.32544 1.48312 1.09039 1.20272 0.98139 0.94867 0.81819 0.92497 1.22079 1.00435 0.98917 0.95048 1.21200 0.97772 0.86875 0.91690 1.43873 1.41267 1.06889 1.40877 1.18389 0.91675 1.32572 0.94809 0.96302 1.26010 1.00028 0.98555 0.96199 1.70033 1.33322 1.38406 1.17264 0.85932 0.83078 0.78759 0.75612 1.19558 1.24079 1.18580 1.21328 0.93220 0.87466 0.95775 1.20240 0.95676 0.96277 0.96169 1.21788 1.00987 0.94823 1.01271 1.21581 0.96567 1.00137 0.98267 1.20543 1.01422 0.94095 0.97083 1.77830 0.98728 1.12577 1.27593 1.47856 1.03363 1.10933 1.57468 0.69732 0.86433 0.87319 0.88830 0.83325 0.83363 0.74323 0.92066 0.89515 0.95542 0.95888 0.93070 0.91856 0.95265 0.91162 0.94603 0.90662 0.94277 0.96376 0.93793 0.89400 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.28 6.08 8.24 138.22 1.14 7.22 16 3 N -0.57 -16.34 11.19 -179.73 -2.01 -18.35 16 4 C 0.23 6.64 6.63 138.63 0.92 7.56 16 5 C -0.04 -0.87 6.33 29.10 0.18 -0.68 16 6 C 0.51 15.27 7.64 87.66 0.67 15.94 16 7 O -0.59 -25.31 15.70 -3.02 -0.05 -25.36 16 8 N -0.71 -16.91 4.93 -446.51 -2.20 -19.11 16 9 C 0.15 4.88 1.98 44.16 0.09 4.97 16 10 H 0.06 2.52 4.73 -2.39 -0.01 2.51 16 11 C -0.13 -4.04 5.38 30.21 0.16 -3.88 16 12 C 0.15 6.35 6.24 86.47 0.54 6.89 16 13 N -0.61 -28.89 1.38 -698.47 -0.96 -29.85 16 14 C -0.24 -14.34 7.31 84.04 0.61 -13.72 16 15 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 16 C -0.01 -0.69 5.22 84.86 0.44 -0.24 16 17 N -0.95 -60.71 13.97 21.65 0.30 -60.41 16 18 Si 0.94 47.13 25.27 68.60 1.73 48.86 16 19 H -0.27 -12.66 6.70 99.48 0.67 -12.00 16 20 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 21 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.15 6.04 3.56 87.37 0.31 6.35 16 23 C -0.08 -2.75 0.72 -53.38 -0.04 -2.79 16 24 C -0.13 -3.60 8.37 71.98 0.60 -3.00 16 25 C -0.11 -4.63 7.02 71.98 0.51 -4.12 16 26 C -0.09 -2.48 3.40 28.62 0.10 -2.38 16 27 N -0.34 -9.55 12.80 -51.34 -0.66 -10.21 16 28 N -0.48 -9.99 7.45 -50.71 -0.38 -10.37 16 29 H 0.45 5.73 8.96 -213.10 -1.91 3.82 16 30 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.42 5.85 8.60 -92.71 -0.80 5.05 16 36 H 0.06 1.98 7.84 -2.39 -0.02 1.96 16 37 H 0.09 2.26 7.32 -2.39 -0.02 2.24 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.02 1.11 7.89 -2.38 -0.02 1.09 16 40 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 42 H 0.03 1.35 3.56 -2.38 -0.01 1.34 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 1.97 4.49 -2.38 -0.01 1.96 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.09 1.82 7.36 -2.39 -0.02 1.80 16 50 H 0.08 1.77 8.00 -2.39 -0.02 1.75 16 Total: -1.00 -90.56 384.90 0.99 -89.57 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -1.78 Total: 17.11 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.98 Total: 18.11 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -5.91 Total: -148.30 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.73 Total: 48.86 kcal Total: -90.56 0.99 -89.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089381431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.020 kcal (2) G-P(sol) polarization free energy of solvation -90.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds