Wall clock time and date at job start Tue Mar 31 2020 18:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36596 * 126.58253 * 2 1 4 4 C 1.47525 * 125.77098 * 359.94885 * 3 2 1 5 5 O 1.21595 * 119.99424 * 0.02562 * 4 3 2 6 6 N 1.34768 * 119.99974 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00126 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47612 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.70362 * 60.30915 * 8 7 6 10 10 C 1.53191 * 109.58800 * 180.66629 * 8 7 6 11 11 C 1.53045 * 109.31144 * 174.41810 * 10 8 7 12 12 C 1.53034 * 109.53851 * 298.63789 * 11 10 8 13 13 C 1.53006 * 109.49524 * 181.31786 * 12 11 10 14 14 C 1.53005 * 109.49598 * 301.37715 * 12 11 10 15 15 C 1.52755 * 109.38639 * 61.23843 * 12 11 10 16 16 N 1.46923 * 109.00945 * 305.58728 * 15 12 11 17 17 C 1.36931 * 120.63207 * 233.58398 * 16 15 12 18 18 H 1.08004 * 119.99951 * 147.15425 * 17 16 15 19 19 C 1.38808 * 120.00203 * 327.15449 * 17 16 15 20 20 N 1.31614 * 120.00028 * 337.80164 * 19 17 16 21 21 Si 1.86800 * 120.00093 * 157.52470 * 19 17 16 22 22 H 1.48497 * 109.47135 * 180.27808 * 21 19 17 23 23 H 1.48502 * 109.47058 * 300.27546 * 21 19 17 24 24 H 1.48500 * 109.47288 * 60.27556 * 21 19 17 25 25 N 1.34399 * 108.45963 * 180.22331 * 3 2 1 26 26 N 1.28767 * 109.52254 * 359.58221 * 25 3 2 27 27 N 1.34821 * 126.57555 * 179.97438 * 2 1 3 28 28 C 1.46501 * 126.59839 * 0.05855 * 27 2 1 29 29 H 1.08999 * 109.47389 * 90.00208 * 1 2 3 30 30 H 1.08996 * 109.47555 * 210.00319 * 1 2 3 31 31 H 1.09000 * 109.46974 * 330.00351 * 1 2 3 32 32 H 0.96998 * 120.00617 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47450 * 59.99562 * 7 6 4 34 34 H 1.09007 * 109.47033 * 300.00008 * 7 6 4 35 35 H 1.09001 * 109.49575 * 294.36721 * 10 8 7 36 36 H 1.09001 * 109.49762 * 54.43630 * 10 8 7 37 37 H 1.09008 * 109.45663 * 58.65804 * 11 10 8 38 38 H 1.08998 * 109.45716 * 178.62306 * 11 10 8 39 39 H 1.08996 * 109.47190 * 59.99849 * 13 12 11 40 40 H 1.08996 * 109.46988 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.46843 * 299.99308 * 13 12 11 42 42 H 1.08996 * 109.47085 * 60.00557 * 14 12 11 43 43 H 1.09000 * 109.46937 * 180.02562 * 14 12 11 44 44 H 1.08999 * 109.47113 * 300.00143 * 14 12 11 45 45 H 1.09001 * 109.51125 * 185.70541 * 15 12 11 46 46 H 1.09003 * 109.43591 * 65.42687 * 15 12 11 47 47 H 0.97005 * 120.00279 * 354.12756 * 20 19 17 48 48 H 1.08994 * 109.46702 * 89.99491 * 28 27 2 49 49 H 1.08993 * 109.46849 * 209.99895 * 28 27 2 50 50 H 1.09005 * 109.46540 * 329.99943 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0011 5 8 0.6860 2.7627 -0.0016 6 7 2.7818 3.4986 -0.0015 7 6 2.3377 4.8947 -0.0020 8 6 3.5576 5.8180 -0.0030 9 1 4.1570 5.6341 -0.8946 10 6 3.0962 7.2787 0.0133 11 6 4.3155 8.1931 0.1527 12 6 5.0289 7.8972 1.4738 13 6 6.2286 8.8343 1.6275 14 6 4.0593 8.1139 2.6374 15 6 5.5088 6.4470 1.4771 16 7 4.3680 5.5647 1.1961 17 6 4.0625 4.5295 2.0388 18 1 3.0336 4.2316 2.1772 19 6 5.0750 3.8632 2.7152 20 7 6.3077 3.8986 2.2554 21 14 4.6894 2.9224 4.2823 22 1 5.9346 2.3097 4.8109 23 1 4.1283 3.8540 5.2935 24 1 3.6989 1.8558 3.9884 25 7 3.5983 0.6788 -0.0050 26 7 3.6298 -0.6085 0.0008 27 7 2.3103 -1.0827 0.0005 28 6 1.8862 -2.4850 -0.0001 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.7293 3.2912 -0.0014 33 1 1.7379 5.0856 0.8879 34 1 1.7378 5.0849 -0.8921 35 1 2.5754 7.5061 -0.9169 36 1 2.4231 7.4382 0.8556 37 1 4.9995 8.0153 -0.6772 38 1 3.9921 9.2340 0.1399 39 1 5.8845 9.8685 1.6243 40 1 6.7361 8.6234 2.5687 41 1 6.9195 8.6787 0.7990 42 1 3.2054 7.4454 2.5282 43 1 4.5679 7.9035 3.5782 44 1 3.7140 9.1478 2.6348 45 1 5.9266 6.2040 2.4541 46 1 6.2706 6.3153 0.7087 47 1 6.4947 4.3174 1.4006 48 1 1.7819 -2.8325 -1.0279 49 1 2.6325 -3.0904 0.5142 50 1 0.9287 -2.5751 0.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089624595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:49 Heat of formation + Delta-G solvation = 71.062701 kcal Electronic energy + Delta-G solvation = -31022.629108 eV Core-core repulsion = 27087.382730 eV Total energy + Delta-G solvation = -3935.246378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.97773 -39.19932 -38.29840 -35.15823 -34.74373 -33.34101 -32.17611 -32.06171 -29.73608 -28.49910 -27.40158 -26.98997 -26.66504 -25.34358 -23.87265 -22.51436 -22.07292 -20.82753 -20.13196 -19.78352 -17.87265 -17.75855 -16.76993 -16.26361 -15.66440 -15.36962 -15.26320 -14.35301 -14.14464 -14.06978 -13.89450 -13.74321 -13.52820 -13.40752 -13.29110 -13.17798 -12.99237 -12.82830 -12.51978 -12.40539 -12.04305 -11.82589 -11.67838 -11.45084 -11.35113 -11.21928 -10.85930 -10.71615 -10.71106 -10.61164 -10.23497 -10.04600 -10.03525 -9.91425 -9.82745 -9.56394 -9.47610 -9.02600 -8.89845 -8.38735 -8.09943 -6.76503 -5.93462 -3.20557 1.32848 2.13740 2.18797 3.54479 3.54877 3.73001 3.76326 3.91099 4.40437 4.42487 4.62541 4.75556 4.82287 5.01319 5.10413 5.14648 5.31970 5.38223 5.43098 5.46391 5.48623 5.62970 5.71366 5.74814 5.83855 5.91473 5.98320 6.05931 6.11717 6.16588 6.19900 6.28516 6.34192 6.41226 6.43689 6.44061 6.49117 6.55056 6.60657 6.80085 6.88889 6.93922 7.00079 7.19859 7.23320 7.29098 8.13518 8.15552 8.42797 8.67572 8.88156 9.16630 9.90133 10.35866 11.30247 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.004050 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.570359 B = 6911.882600 C = 7956.609576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.110 3.890 3 C -0.092 4.092 4 C 0.596 3.404 5 O -0.565 6.565 6 N -0.672 5.672 7 C 0.138 3.862 8 C 0.161 3.839 9 H 0.029 0.971 10 C -0.129 4.129 11 C -0.096 4.096 12 C -0.089 4.089 13 C -0.135 4.135 14 C -0.125 4.125 15 C 0.168 3.832 16 N -0.590 5.590 17 C -0.346 4.346 18 H 0.058 0.942 19 C -0.009 4.009 20 N -0.909 5.909 21 Si 1.053 2.947 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.296 1.296 25 N -0.185 5.185 26 N -0.074 5.074 27 N -0.372 5.372 28 C 0.091 3.909 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.015 0.985 47 H 0.270 0.730 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -4.121 -5.630 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.232 4.232 4 C 0.379 3.621 5 O -0.445 6.445 6 N -0.321 5.321 7 C 0.014 3.986 8 C 0.054 3.946 9 H 0.047 0.953 10 C -0.169 4.169 11 C -0.133 4.133 12 C -0.091 4.091 13 C -0.193 4.193 14 C -0.182 4.182 15 C 0.042 3.958 16 N -0.315 5.315 17 C -0.475 4.475 18 H 0.076 0.924 19 C -0.213 4.213 20 N -0.548 5.548 21 Si 0.884 3.116 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.223 1.223 25 N -0.057 5.057 26 N -0.053 5.053 27 N -0.159 5.159 28 C -0.051 4.051 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.031 -5.263 -4.373 10.551 hybrid contribution -1.150 0.756 -1.110 1.768 sum -9.181 -4.508 -5.483 11.605 Atomic orbital electron populations 1.20648 0.84986 1.05094 1.04168 1.21844 0.96022 0.86509 0.98338 1.21356 0.88826 0.95764 1.17253 1.16687 0.85573 0.82604 0.77190 1.90676 1.16140 1.83811 1.53907 1.45799 1.11079 1.05080 1.70128 1.21272 0.96537 0.80094 1.00655 1.20726 0.91289 0.91714 0.90879 0.95333 1.21998 0.97787 0.96415 1.00706 1.21407 0.96902 0.97787 0.97225 1.21047 0.95041 0.98200 0.94779 1.21786 0.97955 0.98301 1.01280 1.21708 0.99967 0.99224 0.97301 1.20874 0.89108 0.85821 0.99965 1.44070 1.32837 1.31674 1.22898 1.19827 0.93771 1.10535 1.23324 0.92446 1.25609 0.94049 0.97753 1.03895 1.70763 1.20787 1.42179 1.21055 0.83686 0.75199 0.76032 0.76686 1.21202 1.22204 1.22350 1.74740 1.18958 1.03555 1.08492 1.82029 0.95593 1.03889 1.23830 1.50280 1.06766 1.07430 1.51385 1.22063 1.02184 0.76634 1.04220 0.89451 0.91157 0.86974 0.73925 0.91404 0.92645 0.93058 0.91525 0.92951 0.93435 0.93719 0.92963 0.93315 0.91411 0.93558 0.94895 0.90675 0.96747 0.91899 0.89641 0.88305 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.57 36.00 0.34 -0.65 16 2 C 0.11 1.68 7.02 -81.88 -0.57 1.10 16 3 C -0.09 -1.78 6.99 -83.55 -0.58 -2.36 16 4 C 0.60 12.15 7.82 -12.48 -0.10 12.06 16 5 O -0.56 -11.67 14.72 5.28 0.08 -11.59 16 6 N -0.67 -14.01 3.86 -61.35 -0.24 -14.25 16 7 C 0.14 2.68 4.43 -4.04 -0.02 2.66 16 8 C 0.16 3.12 3.02 -67.60 -0.20 2.92 16 9 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.13 -2.15 5.03 -26.61 -0.13 -2.29 16 11 C -0.10 -1.55 4.71 -26.69 -0.13 -1.67 16 12 C -0.09 -1.59 0.77 -154.61 -0.12 -1.70 16 13 C -0.14 -2.13 8.48 37.16 0.32 -1.81 16 14 C -0.12 -2.24 7.98 37.16 0.30 -1.94 16 15 C 0.17 3.68 3.35 -3.94 -0.01 3.67 16 16 N -0.59 -13.33 2.22 -165.04 -0.37 -13.70 16 17 C -0.35 -8.79 6.79 -15.06 -0.10 -8.90 16 18 H 0.06 1.54 6.00 -52.48 -0.31 1.22 16 19 C -0.01 -0.24 4.73 -17.43 -0.08 -0.33 16 20 N -0.91 -26.18 12.57 55.49 0.70 -25.48 16 21 Si 1.05 25.99 29.97 -169.99 -5.10 20.90 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 25 N -0.18 -3.85 12.04 32.85 0.40 -3.45 16 26 N -0.07 -1.36 13.78 60.35 0.83 -0.53 16 27 N -0.37 -5.22 4.03 -63.59 -0.26 -5.47 16 28 C 0.09 0.68 11.33 59.85 0.68 1.36 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.54 7.18 -51.93 -0.37 0.16 16 31 H 0.11 1.48 6.43 -51.93 -0.33 1.15 16 32 H 0.42 9.64 7.06 -40.82 -0.29 9.35 16 33 H 0.07 1.42 7.42 -51.93 -0.39 1.03 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 37 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.33 5.98 -51.93 -0.31 1.02 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.89 6.60 -51.93 -0.34 1.54 16 46 H 0.01 0.33 7.82 -51.93 -0.41 -0.07 16 47 H 0.27 7.80 6.70 -40.82 -0.27 7.53 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.46 7.16 -51.93 -0.37 0.09 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -31.73 387.07 -6.56 -38.29 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.02 Total: 7.34 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.42 Total: 2.12 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 1.06 Total: -62.88 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.10 Total: 20.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.73 -6.56 -38.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089624595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.350 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds