Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36594 * 126.57802 * 2 1 4 4 C 1.47522 * 125.77270 * 0.03737 * 3 2 1 5 5 O 1.21597 * 120.00086 * 359.71818 * 4 3 2 6 6 N 1.34777 * 119.99995 * 179.71264 * 4 3 2 7 7 C 1.46499 * 120.00097 * 180.27744 * 6 4 3 8 8 C 1.52998 * 109.47431 * 179.72612 * 7 6 4 9 9 H 1.09000 * 109.58420 * 299.94846 * 8 7 6 10 10 C 1.53186 * 109.59053 * 179.66268 * 8 7 6 11 11 C 1.53065 * 109.29843 * 185.71836 * 10 8 7 12 12 C 1.53040 * 109.66074 * 61.15284 * 11 10 8 13 13 C 1.53004 * 109.50365 * 178.74807 * 12 11 10 14 14 C 1.53003 * 109.49590 * 58.64982 * 12 11 10 15 15 C 1.53198 * 109.31435 * 298.70396 * 12 11 10 16 16 N 1.46924 * 108.77176 * 54.62905 * 15 12 11 17 17 C 1.36939 * 120.62850 * 126.42030 * 16 15 12 18 18 H 1.07998 * 120.00015 * 211.18447 * 17 16 15 19 19 C 1.38809 * 120.00294 * 31.18250 * 17 16 15 20 20 N 1.31620 * 119.99795 * 13.72999 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 193.72562 * 19 17 16 22 22 H 1.48504 * 109.46978 * 90.00510 * 21 19 17 23 23 H 1.48499 * 109.46924 * 210.00144 * 21 19 17 24 24 H 1.48491 * 109.47331 * 330.00040 * 21 19 17 25 25 N 1.34403 * 108.45735 * 179.77382 * 3 2 1 26 26 N 1.28765 * 109.52275 * 0.22937 * 25 3 2 27 27 N 1.34813 * 126.57643 * 180.16965 * 2 1 3 28 28 C 1.46496 * 126.60075 * 359.96675 * 27 2 1 29 29 H 1.09001 * 109.46933 * 90.00020 * 1 2 3 30 30 H 1.08992 * 109.47074 * 209.99553 * 1 2 3 31 31 H 1.08995 * 109.46780 * 330.00225 * 1 2 3 32 32 H 0.97006 * 119.99735 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.46925 * 299.72441 * 7 6 4 34 34 H 1.09001 * 109.46950 * 59.72057 * 7 6 4 35 35 H 1.09002 * 109.49787 * 305.53247 * 10 8 7 36 36 H 1.09008 * 109.49676 * 65.62559 * 10 8 7 37 37 H 1.09002 * 109.34884 * 301.13275 * 11 10 8 38 38 H 1.08997 * 109.44293 * 181.23982 * 11 10 8 39 39 H 1.08999 * 109.47135 * 179.83754 * 13 12 11 40 40 H 1.08997 * 109.46611 * 299.84114 * 13 12 11 41 41 H 1.08995 * 109.46402 * 59.83850 * 13 12 11 42 42 H 1.08996 * 109.47317 * 300.16760 * 14 12 11 43 43 H 1.09003 * 109.46830 * 60.16580 * 14 12 11 44 44 H 1.08998 * 109.47358 * 180.16379 * 14 12 11 45 45 H 1.08994 * 109.58302 * 294.84569 * 15 12 11 46 46 H 1.08996 * 109.70212 * 174.48830 * 15 12 11 47 47 H 0.96996 * 120.00321 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.46934 * 270.27780 * 28 27 2 49 49 H 1.09006 * 109.46996 * 30.27409 * 28 27 2 50 50 H 1.08996 * 109.47682 * 150.27630 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6860 2.7628 -0.0037 6 7 2.7817 3.4987 0.0065 7 6 2.3376 4.8947 0.0135 8 6 3.5575 5.8181 0.0260 9 1 4.1535 5.6239 0.9176 10 6 3.0961 7.2788 0.0247 11 6 4.3156 8.1944 -0.1067 12 6 5.0328 7.9101 -1.4284 13 6 6.2329 8.8485 -1.5705 14 6 4.0663 8.1361 -2.5928 15 6 5.5162 6.4564 -1.4401 16 7 4.3713 5.5753 -1.1730 17 6 4.0687 4.5468 -2.0251 18 1 3.0426 4.2349 -2.1521 19 6 5.0809 3.9053 -2.7256 20 7 6.3380 4.0893 -2.3818 21 14 4.6589 2.7806 -4.1562 22 1 4.6282 3.5698 -5.4138 23 1 5.6856 1.7134 -4.2664 24 1 3.3275 2.1647 -3.9256 25 7 3.5984 0.6789 0.0050 26 7 3.6300 -0.6084 0.0033 27 7 2.3104 -1.0826 -0.0032 28 6 1.8864 -2.4849 -0.0067 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 3.7293 3.2912 0.0106 33 1 1.7425 5.0911 -0.8784 34 1 1.7330 5.0793 0.9015 35 1 2.4244 7.4475 -0.8171 36 1 2.5739 7.4962 0.9566 37 1 4.9973 8.0093 0.7234 38 1 3.9920 9.2350 -0.0857 39 1 6.7450 8.6436 -2.5107 40 1 5.8884 9.8826 -1.5622 41 1 6.9201 8.6877 -0.7399 42 1 3.2111 7.4683 -2.4900 43 1 3.7227 9.1705 -2.5842 44 1 4.5767 7.9307 -3.5338 45 1 6.2727 6.3168 -0.6679 46 1 5.9410 6.2183 -2.4152 47 1 7.0453 3.6413 -2.8715 48 1 1.7770 -2.8339 1.0202 49 1 0.9315 -2.5744 -0.5246 50 1 2.6352 -3.0897 -0.5181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089624596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = 73.801267 kcal Electronic energy + Delta-G solvation = -30976.754044 eV Core-core repulsion = 27041.626419 eV Total energy + Delta-G solvation = -3935.127625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.99284 -39.09864 -38.19415 -35.09067 -34.73504 -33.09291 -32.15619 -32.01101 -29.90220 -28.49137 -27.40510 -26.94506 -26.54923 -25.39013 -23.86001 -22.54134 -22.11369 -20.83055 -20.01486 -19.74577 -17.83254 -17.63758 -16.33448 -16.25981 -15.60807 -15.40361 -15.24840 -14.27693 -14.07341 -14.03459 -13.85613 -13.69222 -13.61779 -13.31161 -13.20157 -13.13883 -12.99043 -12.77507 -12.58146 -12.32041 -12.09879 -11.69250 -11.59195 -11.34109 -11.21314 -11.07871 -10.86562 -10.78619 -10.71620 -10.54229 -10.32504 -10.04894 -10.03814 -9.99375 -9.73002 -9.52680 -9.34762 -9.18292 -8.91072 -8.46374 -8.10768 -6.53612 -5.73472 -3.18828 1.31140 2.12373 2.17456 3.40953 3.49237 3.49802 3.77282 3.90498 4.38998 4.40219 4.53585 4.76691 4.81292 5.02837 5.09327 5.27343 5.39368 5.40255 5.48005 5.52603 5.57142 5.68158 5.72260 5.82135 5.89227 5.94011 6.09651 6.10425 6.19453 6.23908 6.29919 6.39762 6.43649 6.51421 6.53299 6.53742 6.54404 6.58476 6.71591 6.97248 7.00938 7.08972 7.18897 7.23991 7.46020 7.75082 7.90327 8.13556 8.43317 8.51474 8.88794 9.27370 9.88498 10.46201 11.33845 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.004050 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.560299 B = 6911.562142 C = 7979.301294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.111 3.889 3 C -0.092 4.092 4 C 0.595 3.405 5 O -0.564 6.564 6 N -0.674 5.674 7 C 0.135 3.865 8 C 0.159 3.841 9 H 0.031 0.969 10 C -0.129 4.129 11 C -0.095 4.095 12 C -0.095 4.095 13 C -0.133 4.133 14 C -0.124 4.124 15 C 0.188 3.812 16 N -0.584 5.584 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.017 3.983 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 N -0.185 5.185 26 N -0.075 5.075 27 N -0.373 5.373 28 C 0.091 3.909 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.424 0.576 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.017 0.983 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -4.595 5.818 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.232 4.232 4 C 0.379 3.621 5 O -0.444 6.444 6 N -0.324 5.324 7 C 0.011 3.989 8 C 0.052 3.948 9 H 0.049 0.951 10 C -0.169 4.169 11 C -0.133 4.133 12 C -0.097 4.097 13 C -0.191 4.191 14 C -0.181 4.181 15 C 0.062 3.938 16 N -0.307 5.307 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.183 4.183 20 N -0.538 5.538 21 Si 0.721 3.279 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 N -0.058 5.058 26 N -0.055 5.055 27 N -0.159 5.159 28 C -0.051 4.051 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.270 -4.927 5.746 11.211 hybrid contribution -0.514 -0.759 -0.954 1.323 sum -8.783 -5.686 4.792 11.508 Atomic orbital electron populations 1.20651 0.84953 1.04973 1.04373 1.21861 0.96048 0.86494 0.98275 1.21376 0.88803 0.95825 1.17182 1.16688 0.85602 0.82581 0.77216 1.90679 1.16141 1.83795 1.53823 1.45856 1.11195 1.05154 1.70171 1.21337 0.96754 0.80018 1.00780 1.20729 0.91114 0.91603 0.91320 0.95128 1.22004 0.97796 0.96531 1.00556 1.21407 0.96867 0.97539 0.97484 1.21247 0.94821 0.99239 0.94373 1.21755 0.98064 0.98054 1.01231 1.21697 0.99979 0.98966 0.97462 1.20794 0.88089 0.83510 1.01370 1.44014 1.32010 1.32510 1.22203 1.19099 0.92082 1.08836 1.17953 0.91399 1.24979 0.95521 0.97729 1.00037 1.69978 0.98449 1.45222 1.40185 0.86472 0.77548 0.80620 0.83294 1.21633 1.21790 1.20731 1.74739 1.18996 1.03534 1.08534 1.82023 0.95646 1.03911 1.23885 1.50274 1.06758 1.07434 1.51433 1.22060 1.02193 0.76637 1.04219 0.89384 0.91169 0.86947 0.73705 0.91393 0.92525 0.91647 0.93129 0.92968 0.93715 0.93073 0.94031 0.93351 0.91556 0.95133 0.93683 0.96525 0.89641 0.93684 0.89649 0.88891 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.38 36.01 0.34 -0.65 16 2 C 0.11 1.67 7.02 -81.87 -0.57 1.09 16 3 C -0.09 -1.76 6.99 -83.55 -0.58 -2.34 16 4 C 0.60 12.00 7.82 -12.48 -0.10 11.90 16 5 O -0.56 -11.52 14.72 5.28 0.08 -11.45 16 6 N -0.67 -13.89 3.84 -61.35 -0.24 -14.12 16 7 C 0.14 2.58 4.43 -4.04 -0.02 2.56 16 8 C 0.16 3.10 3.01 -67.60 -0.20 2.90 16 9 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 10 C -0.13 -2.15 5.04 -26.60 -0.13 -2.29 16 11 C -0.10 -1.57 4.70 -26.68 -0.13 -1.69 16 12 C -0.10 -1.73 0.77 -154.38 -0.12 -1.85 16 13 C -0.13 -2.15 8.48 37.16 0.32 -1.83 16 14 C -0.12 -2.24 7.99 37.16 0.30 -1.94 16 15 C 0.19 4.23 3.95 -3.71 -0.01 4.21 16 16 N -0.58 -13.32 2.41 -164.78 -0.40 -13.72 16 17 C -0.25 -6.35 6.97 -15.06 -0.10 -6.45 16 18 H 0.07 1.78 5.86 -52.49 -0.31 1.48 16 19 C 0.02 0.46 4.97 -17.43 -0.09 0.38 16 20 N -0.89 -25.11 11.22 55.49 0.62 -24.48 16 21 Si 0.89 22.41 29.58 -169.99 -5.03 17.38 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 N -0.19 -3.81 12.04 32.85 0.40 -3.42 16 26 N -0.08 -1.37 13.78 60.35 0.83 -0.54 16 27 N -0.37 -5.17 4.03 -63.59 -0.26 -5.43 16 28 C 0.09 0.67 11.17 59.84 0.67 1.34 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 31 H 0.11 1.41 6.43 -51.93 -0.33 1.07 16 32 H 0.42 9.57 7.08 -40.82 -0.29 9.28 16 33 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.12 6.35 -51.93 -0.33 0.79 16 36 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.20 6.19 -51.93 -0.32 1.87 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.45 7.78 -51.93 -0.40 0.05 16 50 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -31.39 388.86 -6.72 -38.11 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.14 Total: 6.46 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.44 Total: 5.34 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.96 Total: -61.70 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.39 -6.72 -38.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089624596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.910 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds