Wall clock time and date at job start Tue Mar 31 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36594 * 126.57802 * 2 1 4 4 C 1.47522 * 125.77270 * 0.03737 * 3 2 1 5 5 O 1.21597 * 120.00086 * 359.71818 * 4 3 2 6 6 N 1.34777 * 119.99995 * 179.71264 * 4 3 2 7 7 C 1.46499 * 120.00097 * 180.27744 * 6 4 3 8 8 C 1.52998 * 109.47431 * 179.72612 * 7 6 4 9 9 H 1.09000 * 109.58420 * 299.94846 * 8 7 6 10 10 C 1.53186 * 109.59053 * 179.66268 * 8 7 6 11 11 C 1.53065 * 109.29843 * 185.71836 * 10 8 7 12 12 C 1.53040 * 109.66074 * 61.15284 * 11 10 8 13 13 C 1.53004 * 109.50365 * 178.74807 * 12 11 10 14 14 C 1.53003 * 109.49590 * 58.64982 * 12 11 10 15 15 C 1.53198 * 109.31435 * 298.70396 * 12 11 10 16 16 N 1.46924 * 108.77176 * 54.62905 * 15 12 11 17 17 C 1.36939 * 120.62850 * 126.42030 * 16 15 12 18 18 H 1.07998 * 120.00015 * 211.18447 * 17 16 15 19 19 C 1.38809 * 120.00294 * 31.18250 * 17 16 15 20 20 N 1.31620 * 119.99795 * 13.72999 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 193.72562 * 19 17 16 22 22 H 1.48504 * 109.46978 * 90.00510 * 21 19 17 23 23 H 1.48499 * 109.46924 * 210.00144 * 21 19 17 24 24 H 1.48491 * 109.47331 * 330.00040 * 21 19 17 25 25 N 1.34403 * 108.45735 * 179.77382 * 3 2 1 26 26 N 1.28765 * 109.52275 * 0.22937 * 25 3 2 27 27 N 1.34813 * 126.57643 * 180.16965 * 2 1 3 28 28 C 1.46496 * 126.60075 * 359.96675 * 27 2 1 29 29 H 1.09001 * 109.46933 * 90.00020 * 1 2 3 30 30 H 1.08992 * 109.47074 * 209.99553 * 1 2 3 31 31 H 1.08995 * 109.46780 * 330.00225 * 1 2 3 32 32 H 0.97006 * 119.99735 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.46925 * 299.72441 * 7 6 4 34 34 H 1.09001 * 109.46950 * 59.72057 * 7 6 4 35 35 H 1.09002 * 109.49787 * 305.53247 * 10 8 7 36 36 H 1.09008 * 109.49676 * 65.62559 * 10 8 7 37 37 H 1.09002 * 109.34884 * 301.13275 * 11 10 8 38 38 H 1.08997 * 109.44293 * 181.23982 * 11 10 8 39 39 H 1.08999 * 109.47135 * 179.83754 * 13 12 11 40 40 H 1.08997 * 109.46611 * 299.84114 * 13 12 11 41 41 H 1.08995 * 109.46402 * 59.83850 * 13 12 11 42 42 H 1.08996 * 109.47317 * 300.16760 * 14 12 11 43 43 H 1.09003 * 109.46830 * 60.16580 * 14 12 11 44 44 H 1.08998 * 109.47358 * 180.16379 * 14 12 11 45 45 H 1.08994 * 109.58302 * 294.84569 * 15 12 11 46 46 H 1.08996 * 109.70212 * 174.48830 * 15 12 11 47 47 H 0.96996 * 120.00321 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.46934 * 270.27780 * 28 27 2 49 49 H 1.09006 * 109.46996 * 30.27409 * 28 27 2 50 50 H 1.08996 * 109.47682 * 150.27630 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6860 2.7628 -0.0037 6 7 2.7817 3.4987 0.0065 7 6 2.3376 4.8947 0.0135 8 6 3.5575 5.8181 0.0260 9 1 4.1535 5.6239 0.9176 10 6 3.0961 7.2788 0.0247 11 6 4.3156 8.1944 -0.1067 12 6 5.0328 7.9101 -1.4284 13 6 6.2329 8.8485 -1.5705 14 6 4.0663 8.1361 -2.5928 15 6 5.5162 6.4564 -1.4401 16 7 4.3713 5.5753 -1.1730 17 6 4.0687 4.5468 -2.0251 18 1 3.0426 4.2349 -2.1521 19 6 5.0809 3.9053 -2.7256 20 7 6.3380 4.0893 -2.3818 21 14 4.6589 2.7806 -4.1562 22 1 4.6282 3.5698 -5.4138 23 1 5.6856 1.7134 -4.2664 24 1 3.3275 2.1647 -3.9256 25 7 3.5984 0.6789 0.0050 26 7 3.6300 -0.6084 0.0033 27 7 2.3104 -1.0826 -0.0032 28 6 1.8864 -2.4849 -0.0067 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 3.7293 3.2912 0.0106 33 1 1.7425 5.0911 -0.8784 34 1 1.7330 5.0793 0.9015 35 1 2.4244 7.4475 -0.8171 36 1 2.5739 7.4962 0.9566 37 1 4.9973 8.0093 0.7234 38 1 3.9920 9.2350 -0.0857 39 1 6.7450 8.6436 -2.5107 40 1 5.8884 9.8826 -1.5622 41 1 6.9201 8.6877 -0.7399 42 1 3.2111 7.4683 -2.4900 43 1 3.7227 9.1705 -2.5842 44 1 4.5767 7.9307 -3.5338 45 1 6.2727 6.3168 -0.6679 46 1 5.9410 6.2183 -2.4152 47 1 7.0453 3.6413 -2.8715 48 1 1.7770 -2.8339 1.0202 49 1 0.9315 -2.5744 -0.5246 50 1 2.6352 -3.0897 -0.5181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089624596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:52 Heat of formation + Delta-G solvation = 53.079968 kcal Electronic energy + Delta-G solvation = -30977.652587 eV Core-core repulsion = 27041.626419 eV Total energy + Delta-G solvation = -3936.026168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.25130 -40.67828 -39.74254 -36.63077 -35.89029 -34.94718 -33.62968 -33.22592 -31.71525 -29.71501 -28.32199 -28.26970 -27.98308 -27.30131 -25.34235 -24.13919 -23.60683 -21.97338 -21.64467 -21.18599 -19.44354 -19.06982 -17.99994 -17.47261 -17.16184 -16.89001 -16.67800 -16.07593 -15.66482 -15.32315 -15.27763 -15.21461 -14.96933 -14.69807 -14.53847 -14.20266 -14.14010 -13.94443 -13.83435 -13.74553 -13.29372 -13.09908 -13.01043 -12.92443 -12.83906 -12.72246 -12.50954 -12.47927 -12.22868 -12.12124 -12.05689 -11.86187 -11.60016 -11.23083 -11.12652 -11.06117 -10.89038 -10.81847 -10.46494 -10.23621 -9.73323 -8.47842 -7.79656 -5.23698 0.13600 0.67663 1.19079 1.34439 1.38547 1.42375 2.27783 2.42728 2.49950 3.26615 3.36792 3.50245 3.63901 3.66719 3.82005 4.03121 4.07463 4.23362 4.32273 4.35786 4.41912 4.48669 4.56284 4.59905 4.64470 4.69249 4.73178 4.78099 4.85101 4.90143 4.96455 4.99169 5.08453 5.10104 5.14061 5.17140 5.19830 5.29118 5.43204 5.51370 5.55320 5.58041 5.62990 5.68846 5.75785 5.85698 5.93070 6.48794 6.62735 6.97267 7.25095 7.28722 7.94717 8.46947 9.24852 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.004050 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.560299 B = 6911.562142 C = 7979.301294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.127 3.873 3 C -0.132 4.132 4 C 0.594 3.406 5 O -0.571 6.571 6 N -0.685 5.685 7 C 0.139 3.861 8 C 0.158 3.842 9 H 0.024 0.976 10 C -0.122 4.122 11 C -0.091 4.091 12 C -0.092 4.092 13 C -0.128 4.128 14 C -0.117 4.117 15 C 0.197 3.803 16 N -0.595 5.595 17 C -0.221 4.221 18 H 0.060 0.940 19 C -0.028 4.028 20 N -0.922 5.922 21 Si 0.929 3.071 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.287 1.287 25 N -0.228 5.228 26 N -0.104 5.104 27 N -0.355 5.355 28 C 0.073 3.927 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.027 0.973 45 H -0.011 1.011 46 H 0.047 0.953 47 H 0.244 0.756 48 H 0.113 0.887 49 H 0.128 0.872 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 -4.331 6.831 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 C -0.273 4.273 4 C 0.379 3.621 5 O -0.452 6.452 6 N -0.333 5.333 7 C 0.016 3.984 8 C 0.052 3.948 9 H 0.042 0.958 10 C -0.161 4.161 11 C -0.129 4.129 12 C -0.093 4.093 13 C -0.186 4.186 14 C -0.174 4.174 15 C 0.071 3.929 16 N -0.318 5.318 17 C -0.352 4.352 18 H 0.078 0.922 19 C -0.225 4.225 20 N -0.569 5.569 21 Si 0.761 3.239 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.213 1.213 25 N -0.101 5.101 26 N -0.084 5.084 27 N -0.142 5.142 28 C -0.066 4.066 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.249 0.751 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.131 0.869 49 H 0.147 0.853 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.039 -4.677 6.766 13.766 hybrid contribution 0.222 -0.966 -1.202 1.558 sum -10.817 -5.643 5.563 13.409 Atomic orbital electron populations 1.20812 0.81666 1.06537 1.05497 1.22415 0.97616 0.85549 0.95670 1.21506 0.89413 0.96312 1.20067 1.16901 0.85443 0.83169 0.76619 1.90653 1.16088 1.84186 1.54271 1.45944 1.10610 1.05973 1.70769 1.21366 0.96519 0.79429 1.01096 1.20905 0.90585 0.94019 0.89330 0.95817 1.21937 0.98089 0.93855 1.02195 1.21393 0.96406 0.99192 0.95904 1.21143 0.95957 0.96275 0.95935 1.21706 0.97083 0.99031 1.00787 1.21615 0.98930 1.00399 0.96444 1.20570 0.87507 0.86567 0.98219 1.44185 1.32308 1.32095 1.23258 1.19080 0.91253 1.08025 1.16805 0.92211 1.25363 0.95714 0.99405 1.02006 1.70088 0.98781 1.46758 1.41251 0.85837 0.76436 0.79406 0.82187 1.21375 1.23037 1.21286 1.74696 1.20451 1.04784 1.10131 1.81873 0.98226 1.03232 1.25046 1.50661 1.05182 1.09421 1.48886 1.22711 1.04011 0.73108 1.06746 0.88171 0.86470 0.88485 0.75138 0.92813 0.90201 0.91744 0.89952 0.93051 0.90560 0.94111 0.91109 0.93242 0.93317 0.91987 0.95400 0.99245 0.93415 0.94653 0.86870 0.85335 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.38 71.24 0.67 -0.96 16 2 C 0.13 3.64 7.02 41.72 0.29 3.93 16 3 C -0.13 -5.12 6.99 40.82 0.29 -4.83 16 4 C 0.59 24.33 7.82 86.69 0.68 25.01 16 5 O -0.57 -23.20 14.72 -4.02 -0.06 -23.26 16 6 N -0.68 -29.00 3.84 -466.28 -1.79 -30.79 16 7 C 0.14 5.30 4.43 86.38 0.38 5.68 16 8 C 0.16 6.09 3.01 44.97 0.14 6.23 16 9 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 10 C -0.12 -3.74 5.04 30.68 0.15 -3.59 16 11 C -0.09 -2.75 4.70 30.63 0.14 -2.60 16 12 C -0.09 -3.23 0.77 -52.10 -0.04 -3.27 16 13 C -0.13 -3.93 8.48 71.98 0.61 -3.32 16 14 C -0.12 -4.05 7.99 71.98 0.58 -3.48 16 15 C 0.20 9.13 3.95 86.36 0.34 9.47 16 16 N -0.59 -27.80 2.41 -675.25 -1.63 -29.43 16 17 C -0.22 -11.59 6.97 84.03 0.59 -11.01 16 18 H 0.06 3.24 5.86 -2.91 -0.02 3.22 16 19 C -0.03 -1.60 4.97 84.86 0.42 -1.18 16 20 N -0.92 -54.55 11.22 21.65 0.24 -54.31 16 21 Si 0.93 47.91 29.58 68.60 2.03 49.94 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 24 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 25 N -0.23 -9.77 12.04 -50.00 -0.60 -10.37 16 26 N -0.10 -3.85 13.78 37.02 0.51 -3.34 16 27 N -0.36 -9.26 4.03 -355.09 -1.43 -10.69 16 28 C 0.07 0.83 11.17 127.77 1.43 2.25 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 1.09 7.84 -2.39 -0.02 1.07 16 31 H 0.10 2.22 6.43 -2.39 -0.02 2.21 16 32 H 0.41 19.54 7.08 -92.70 -0.66 18.88 16 33 H 0.05 2.19 7.42 -2.39 -0.02 2.18 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.06 2.04 6.35 -2.39 -0.02 2.02 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.85 5.98 -2.39 -0.01 1.84 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.05 2.57 6.19 -2.39 -0.01 2.56 16 47 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.13 0.61 7.78 -2.38 -0.02 0.59 16 50 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.88 388.86 4.22 -69.66 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.29 Total: 24.24 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.66 Total: 18.35 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -4.70 Total: -138.93 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -73.88 4.22 -69.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089624596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.736 kcal (2) G-P(sol) polarization free energy of solvation -73.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds