Wall clock time and date at job start Tue Mar 31 2020 20:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47709 * 2 1 4 4 C 1.36596 * 126.58038 * 270.03014 * 3 2 1 5 5 C 1.47521 * 125.77041 * 359.97438 * 4 3 2 6 6 O 1.21603 * 119.99881 * 359.72336 * 5 4 3 7 7 N 1.34773 * 120.00175 * 179.97438 * 5 4 3 8 8 C 1.46505 * 120.00095 * 179.72702 * 7 5 4 9 9 C 1.53005 * 109.46904 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.88679 * 51.11621 * 9 8 7 11 11 C 1.54914 * 110.99833 * 287.19220 * 9 8 7 12 12 N 1.47430 * 104.82810 * 204.91689 * 11 9 8 13 13 C 1.36932 * 125.64572 * 204.14643 * 12 11 9 14 14 H 1.08004 * 120.00486 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99730 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47193 * 60.00445 * 17 15 13 19 19 H 1.48509 * 109.46930 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47267 * 299.99612 * 17 15 13 21 21 C 1.47018 * 108.70345 * 24.13527 * 12 11 9 22 22 C 1.54322 * 107.27358 * 358.93429 * 21 12 11 23 23 H 1.09000 * 110.87119 * 96.24366 * 22 21 12 24 24 C 1.53000 * 110.72517 * 219.44717 * 22 21 12 25 25 N 1.34402 * 108.45863 * 179.73453 * 4 3 2 26 26 N 1.28754 * 109.52469 * 0.25698 * 25 4 3 27 27 N 1.34816 * 126.58345 * 90.20953 * 3 2 1 28 28 C 1.46502 * 126.59239 * 0.02562 * 27 3 2 29 29 C 1.52997 * 109.47072 * 270.28370 * 28 27 3 30 30 H 1.09001 * 109.47306 * 300.00638 * 1 2 3 31 31 H 1.08999 * 109.46950 * 59.99539 * 1 2 3 32 32 H 1.09000 * 109.47674 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47218 * 239.99736 * 2 1 3 34 34 H 1.08998 * 109.47158 * 119.99955 * 2 1 3 35 35 H 0.97000 * 120.00112 * 359.73137 * 7 5 4 36 36 H 1.09003 * 109.46699 * 299.99996 * 8 7 5 37 37 H 1.08993 * 109.47199 * 60.00009 * 8 7 5 38 38 H 1.08994 * 110.36972 * 323.75994 * 11 9 8 39 39 H 1.08993 * 110.36659 * 86.08367 * 11 9 8 40 40 H 0.96995 * 119.99969 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.88154 * 239.52121 * 21 12 11 42 42 H 1.08994 * 110.01533 * 118.42739 * 21 12 11 43 43 H 1.09000 * 109.47326 * 173.52033 * 24 22 21 44 44 H 1.08998 * 109.46693 * 293.52610 * 24 22 21 45 45 H 1.08994 * 109.46717 * 53.52075 * 24 22 21 46 46 H 1.09006 * 109.47005 * 30.27961 * 28 27 3 47 47 H 1.08996 * 109.47271 * 150.28564 * 28 27 3 48 48 H 1.09003 * 109.47526 * 179.97438 * 29 28 27 49 49 H 1.09002 * 109.47475 * 300.00086 * 29 28 27 50 50 H 1.09008 * 109.47218 * 60.00115 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3033 2.1884 -1.0969 5 6 2.1540 1.7668 -2.5027 6 8 1.7630 0.6451 -2.7628 7 7 2.4556 2.6231 -3.4987 8 6 2.3130 2.2024 -4.8948 9 6 2.7179 3.3533 -5.8181 10 1 3.6949 3.7489 -5.5406 11 6 1.6446 4.4703 -5.8163 12 7 1.8129 5.1573 -7.1099 13 6 1.4437 6.4475 -7.3822 14 1 0.9863 7.0522 -6.6131 15 6 1.6574 6.9784 -8.6469 16 7 2.2144 6.2414 -9.5845 17 14 1.1544 8.7386 -9.0182 18 1 1.8836 9.6632 -8.1133 19 1 1.4882 9.0618 -10.4288 20 1 -0.3076 8.8905 -8.8078 21 6 2.4430 4.2279 -8.0589 22 6 2.7003 2.9067 -7.3040 23 1 1.8952 2.1941 -7.4830 24 6 4.0498 2.3079 -7.7052 25 7 2.7238 3.3946 -0.6789 26 7 2.7367 3.4235 0.6083 27 7 2.3041 2.1770 1.0826 28 6 2.1680 1.7753 2.4849 29 6 0.7583 2.1095 2.9766 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7673 3.5180 -3.2913 36 1 2.9564 1.3427 -5.0826 37 1 1.2758 1.9290 -5.0877 38 1 0.6469 4.0377 -5.7435 39 1 1.8196 5.1632 -4.9933 40 1 2.3641 6.6124 -10.4681 41 1 3.3869 4.6426 -8.4126 42 1 1.7774 4.0488 -8.9032 43 1 4.2632 1.4412 -7.0796 44 1 4.0149 2.0017 -8.7508 45 1 4.8327 3.0543 -7.5712 46 1 2.3389 0.7024 2.5737 47 1 2.9000 2.3112 3.0890 48 1 0.6568 1.8103 4.0198 49 1 0.5872 3.1823 2.8877 50 1 0.0261 1.5736 2.3725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092962786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:33 Heat of formation + Delta-G solvation = 43.311322 kcal Electronic energy + Delta-G solvation = -29251.885799 eV Core-core repulsion = 25315.436031 eV Total energy + Delta-G solvation = -3936.449769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.36418 -40.61577 -39.47302 -36.85797 -36.03580 -34.76413 -34.60111 -32.53609 -31.69481 -31.30913 -30.25952 -27.84907 -26.77808 -25.58565 -25.14997 -24.60701 -23.79403 -21.83084 -21.57546 -21.18806 -20.71286 -19.13118 -18.67590 -17.53714 -17.29195 -16.80917 -16.71769 -16.21492 -15.86523 -15.78448 -15.61941 -15.49681 -14.87072 -14.70572 -14.64559 -14.39561 -14.14519 -13.90498 -13.76706 -13.43381 -13.40578 -13.24705 -13.13757 -13.09013 -12.84500 -12.75213 -12.64924 -12.42186 -12.32102 -12.00014 -11.96084 -11.88799 -11.82761 -11.55042 -11.42028 -11.35709 -11.21804 -10.99109 -10.68912 -10.33159 -9.96854 -8.88486 -7.83946 -5.19418 0.10546 0.59920 1.08569 1.44686 1.48285 1.54456 2.13846 2.22819 2.49690 3.13750 3.33211 3.38485 3.51901 3.61613 3.69717 3.82606 3.94942 3.95682 3.97260 4.10944 4.23982 4.30311 4.39035 4.43884 4.49688 4.52946 4.62114 4.65980 4.75070 4.76717 4.82935 4.87447 4.88254 4.97842 4.98646 5.09421 5.11871 5.17297 5.21646 5.34909 5.38114 5.40805 5.47158 5.48579 5.54218 5.74027 5.83233 6.21443 6.41708 6.89000 7.11765 7.13082 7.79002 8.43748 9.25996 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.002421 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.672861 B =11560.806052 C =12583.102212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C 0.137 3.863 4 C -0.130 4.130 5 C 0.603 3.397 6 O -0.556 6.556 7 N -0.709 5.709 8 C 0.147 3.853 9 C -0.092 4.092 10 H 0.084 0.916 11 C 0.137 3.863 12 N -0.629 5.629 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.067 4.067 16 N -0.950 5.950 17 Si 0.978 3.022 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.192 3.808 22 C -0.099 4.099 23 H 0.079 0.921 24 C -0.127 4.127 25 N -0.228 5.228 26 N -0.092 5.092 27 N -0.347 5.347 28 C 0.102 3.898 29 C -0.170 4.170 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.015 0.985 42 H 0.002 0.998 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.136 0.864 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.048 0.952 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -17.407 27.105 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.003 4.003 4 C -0.271 4.271 5 C 0.389 3.611 6 O -0.434 6.434 7 N -0.359 5.359 8 C 0.023 3.977 9 C -0.112 4.112 10 H 0.102 0.898 11 C 0.012 3.988 12 N -0.355 5.355 13 C -0.373 4.373 14 H 0.097 0.903 15 C -0.259 4.259 16 N -0.599 5.599 17 Si 0.806 3.194 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.204 1.204 21 C 0.067 3.933 22 C -0.119 4.119 23 H 0.098 0.902 24 C -0.185 4.185 25 N -0.100 5.100 26 N -0.071 5.071 27 N -0.133 5.133 28 C -0.016 4.016 29 C -0.228 4.228 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.034 0.966 42 H 0.020 0.980 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.154 0.846 47 H 0.136 0.864 48 H 0.132 0.868 49 H 0.067 0.933 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.412 -16.624 27.187 31.869 hybrid contribution -0.449 1.135 -0.947 1.545 sum -0.037 -15.489 26.240 30.470 Atomic orbital electron populations 1.21720 0.92554 1.03894 1.01688 1.20602 0.97568 0.85443 1.06449 1.22338 0.95047 0.97092 0.85789 1.21308 1.17145 0.92917 0.95697 1.16848 0.76979 0.84356 0.82958 1.90734 1.48462 1.20203 1.84017 1.45846 1.66726 1.17310 1.06010 1.21256 1.01778 0.96429 0.78207 1.22477 0.99207 0.94702 0.94780 0.89764 1.21749 0.95897 0.93249 0.87894 1.44787 1.71516 1.10368 1.08858 1.19412 1.33259 0.88266 0.96402 0.90307 1.25652 1.01763 1.02443 0.96092 1.70182 1.49674 1.36750 1.03266 0.85159 0.78066 0.79594 0.76558 1.20306 1.21875 1.20422 1.20990 0.95020 0.86916 0.90393 1.22315 0.99270 0.96704 0.93565 0.90229 1.21645 0.94731 1.00510 1.01593 1.74599 1.11688 1.18802 1.04957 1.81889 1.21433 1.00786 1.03023 1.50841 1.43658 1.09841 1.08939 1.22552 1.01103 1.04255 0.73709 1.22266 0.94120 1.02287 1.04140 0.91549 0.94450 0.89167 0.88021 0.86495 0.75434 0.89761 0.91569 0.96291 0.94256 0.94400 0.96646 0.97993 0.90358 0.92529 0.93590 0.84612 0.86372 0.86797 0.93276 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.06 -0.78 5.63 29.85 0.17 -0.62 16 3 C 0.14 2.65 6.27 41.72 0.26 2.91 16 4 C -0.13 -3.45 6.99 40.82 0.29 -3.16 16 5 C 0.60 17.29 7.82 86.69 0.68 17.97 16 6 O -0.56 -16.99 14.72 -4.04 -0.06 -17.05 16 7 N -0.71 -20.03 5.50 -466.26 -2.56 -22.59 16 8 C 0.15 4.18 5.13 86.38 0.44 4.62 16 9 C -0.09 -3.11 2.50 -9.40 -0.02 -3.13 16 10 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 11 C 0.14 5.79 6.65 86.86 0.58 6.37 16 12 N -0.63 -33.59 3.39 -692.00 -2.35 -35.94 16 13 C -0.24 -14.25 10.28 84.04 0.86 -13.39 16 14 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 15 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 16 N -0.95 -58.65 10.31 21.65 0.22 -58.43 16 17 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C 0.19 9.70 4.97 86.73 0.43 10.13 16 22 C -0.10 -3.60 3.02 -9.60 -0.03 -3.63 16 23 H 0.08 2.74 8.04 -2.39 -0.02 2.72 16 24 C -0.13 -3.85 9.16 71.98 0.66 -3.19 16 25 N -0.23 -6.57 12.04 -50.00 -0.60 -7.17 16 26 N -0.09 -2.34 13.78 37.02 0.51 -1.83 16 27 N -0.35 -5.93 3.63 -333.77 -1.21 -7.14 16 28 C 0.10 0.63 7.02 86.38 0.61 1.24 16 29 C -0.17 -0.87 10.24 71.98 0.74 -0.13 16 30 H 0.07 0.60 6.12 -2.39 -0.01 0.58 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.72 6.42 -2.38 -0.02 1.70 16 34 H 0.12 0.56 7.18 -2.39 -0.02 0.54 16 35 H 0.41 11.57 8.16 -92.71 -0.76 10.82 16 36 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.07 1.98 7.96 -2.39 -0.02 1.96 16 38 H 0.02 0.82 7.91 -2.39 -0.02 0.80 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.02 0.87 7.01 -2.39 -0.02 0.85 16 42 H 0.00 0.10 7.50 -2.39 -0.02 0.09 16 43 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 46 H 0.14 -0.05 7.16 -2.38 -0.02 -0.07 16 47 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.07 0.39 6.12 -2.38 -0.01 0.37 16 Total: -1.00 -77.56 400.31 3.00 -74.56 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.19 Total: 14.77 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.84 Total: 11.55 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.99 Total: -133.10 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.06 Total: -17.05 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -77.56 3.00 -74.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092962786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.873 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds