Wall clock time and date at job start Tue Mar 31 2020 20:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.53000 * 109.47060 * 65.00086 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00140 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64926 * 0.02562 * 8 6 5 10 10 C 1.54903 * 104.83483 * 204.09411 * 9 8 6 11 11 C 1.55161 * 101.57878 * 322.99156 * 10 9 8 12 12 H 1.09000 * 110.72024 * 276.95497 * 11 10 9 13 13 N 1.46501 * 110.71863 * 153.86552 * 11 10 9 14 14 C 1.35313 * 125.87097 * 326.44943 * 13 11 10 15 15 C 1.35347 * 106.17885 * 179.97438 * 14 13 11 16 16 C 1.50704 * 126.75291 * 179.97438 * 15 14 13 17 17 N 1.46494 * 109.46858 * 95.00335 * 16 15 14 18 18 C 1.36946 * 119.99677 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99879 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99621 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00401 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99440 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47062 * 120.00315 * 22 20 18 25 25 H 1.48510 * 109.47005 * 239.99897 * 22 20 18 26 26 N 1.33767 * 106.49534 * 0.02562 * 15 14 13 27 27 N 1.28634 * 108.88688 * 359.72959 * 26 15 14 28 28 C 1.47023 * 125.64769 * 179.71245 * 8 6 5 29 29 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 30 30 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 33 33 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 35 35 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 36 36 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 37 37 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 38 38 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 39 39 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 40 40 H 1.09004 * 110.36967 * 322.93225 * 9 8 6 41 41 H 1.09000 * 110.36618 * 85.25303 * 9 8 6 42 42 H 1.09007 * 111.00708 * 81.06298 * 10 9 8 43 43 H 1.08996 * 111.01049 * 204.88100 * 10 9 8 44 44 H 1.08008 * 126.90900 * 359.97438 * 14 13 11 45 45 H 1.08998 * 109.47058 * 215.00690 * 16 15 14 46 46 H 1.08995 * 109.46860 * 335.00077 * 16 15 14 47 47 H 0.96995 * 120.00181 * 359.97438 * 17 16 15 48 48 H 0.96999 * 120.00073 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.88020 * 298.39544 * 28 8 6 50 50 H 1.09002 * 109.87767 * 59.56072 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1877 6 6 2.1372 -2.9059 2.4185 7 8 2.7578 -2.2935 3.2614 8 7 1.8971 -4.2220 2.5819 9 6 1.1607 -5.0845 1.6400 10 6 0.6300 -6.2545 2.5055 11 6 1.8066 -6.4692 3.4940 12 1 2.5785 -7.0940 3.0449 13 7 1.3294 -7.0590 4.7473 14 6 0.1283 -6.8274 5.3259 15 6 0.1052 -7.5699 6.4572 16 6 -1.0200 -7.6568 7.4560 17 7 -1.8615 -8.8146 7.1439 18 6 -2.9535 -9.0966 7.9208 19 1 -3.1944 -8.4652 8.7632 20 6 -3.7511 -10.1934 7.6247 21 7 -3.4577 -10.9626 6.5978 22 14 -5.2402 -10.5784 8.6848 23 1 -5.3497 -9.5702 9.7695 24 1 -6.4665 -10.5413 7.8481 25 1 -5.0879 -11.9305 9.2800 26 7 1.2781 -8.2106 6.5151 27 7 1.9786 -7.8907 5.4847 28 6 2.3319 -5.0367 3.7260 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6055 -0.2619 2.1369 37 1 3.1264 -0.6444 1.2950 38 1 0.5490 -2.2725 1.1419 39 1 2.0699 -2.6550 0.3000 40 1 0.3311 -4.5367 1.1931 41 1 1.8303 -5.4588 0.8656 42 1 -0.2782 -5.9677 3.0356 43 1 0.4614 -7.1442 1.8989 44 1 -0.6545 -6.1801 4.9587 45 1 -0.6078 -7.7670 8.4590 46 1 -1.6197 -6.7480 7.4076 47 1 -1.6457 -9.3810 6.3867 48 1 -4.0150 -11.7292 6.3911 49 1 3.4203 -5.0436 3.7837 50 1 1.9121 -4.6347 4.6481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098612072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:09 Heat of formation + Delta-G solvation = 67.093026 kcal Electronic energy + Delta-G solvation = -28304.217947 eV Core-core repulsion = 24368.799430 eV Total energy + Delta-G solvation = -3935.418516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.07847 -40.58613 -38.35433 -36.90347 -35.08524 -34.06695 -32.02687 -31.62578 -30.82354 -29.96619 -29.20349 -27.62200 -25.93986 -25.55881 -23.64401 -23.20411 -22.73786 -20.89838 -20.63805 -20.41261 -19.69954 -17.91781 -17.44600 -17.14705 -16.46644 -16.19597 -15.83399 -15.49106 -14.91167 -14.81141 -14.53955 -14.26217 -14.18176 -14.00991 -13.68013 -13.35378 -13.20423 -13.16156 -12.91826 -12.71708 -12.64038 -12.53147 -12.25880 -12.22744 -12.00981 -11.80752 -11.52527 -11.27489 -11.25211 -11.09975 -11.01104 -10.90192 -10.82853 -10.47943 -10.28006 -10.06314 -9.90638 -9.73486 -9.21329 -8.90166 -8.86487 -6.91994 -5.74520 -3.04059 1.73523 2.05331 2.21235 2.62530 2.88410 3.45164 3.51041 3.53287 3.66031 3.74128 4.14825 4.25665 4.30062 4.37255 4.40707 4.55323 4.59071 4.62630 4.71347 4.75711 4.89171 4.91983 5.06214 5.08984 5.17437 5.20272 5.22830 5.27624 5.30861 5.35400 5.37835 5.44235 5.49281 5.56388 5.58238 5.62260 5.65565 5.76632 5.82986 5.88242 5.96309 6.16820 6.38144 6.64603 6.71958 6.77661 6.93851 7.70527 7.71708 8.42759 8.80181 9.54767 10.10185 10.46319 11.48295 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.001964 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.157134 B =14256.154805 C =15152.445666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.529 3.471 7 O -0.533 6.533 8 N -0.622 5.622 9 C 0.102 3.898 10 C -0.144 4.144 11 C 0.137 3.863 12 H 0.130 0.870 13 N -0.294 5.294 14 C -0.042 4.042 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.093 5.093 28 C 0.101 3.899 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.186 0.814 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.086 0.914 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.091 21.508 -20.030 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.139 4.139 5 C -0.176 4.176 6 C 0.319 3.681 7 O -0.409 6.409 8 N -0.358 5.358 9 C -0.021 4.021 10 C -0.183 4.183 11 C 0.034 3.966 12 H 0.148 0.852 13 N -0.088 5.088 14 C -0.192 4.192 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.118 5.118 27 N -0.071 5.071 28 C -0.023 4.023 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.648 21.160 -19.264 31.286 hybrid contribution -1.755 -0.038 -0.034 1.756 sum 10.893 21.122 -19.298 30.613 Atomic orbital electron populations 1.21928 0.95155 1.01824 1.01988 1.21144 0.95977 0.96467 0.98030 1.21829 1.01060 0.95780 1.01862 1.21440 1.01872 0.92300 0.98274 1.21753 1.03020 0.97006 0.95816 1.20557 0.79392 0.79677 0.88476 1.90743 1.40541 1.64879 1.44762 1.48472 1.56521 1.08375 1.22433 1.22388 0.96494 0.90854 0.92386 1.23307 0.97734 0.99841 0.97427 1.22488 0.98776 0.94316 0.81055 0.85203 1.47097 1.12277 1.30969 1.18489 1.23266 0.91183 1.07471 0.97283 1.22471 0.96122 0.97569 0.97775 1.18959 0.85905 0.92253 0.92602 1.42306 1.29565 1.29454 1.35715 1.19287 1.01557 1.08398 1.07734 0.90811 1.24757 0.99691 0.97971 0.98539 1.69691 1.40456 1.18468 1.29437 0.86086 0.82527 0.77893 0.79484 1.20459 1.21937 1.21848 1.75110 1.03876 1.19762 1.13029 1.78295 1.21152 1.07340 1.00312 1.22187 1.00960 0.88428 0.90760 0.92506 0.92664 0.92529 0.91163 0.92626 0.92664 0.92541 0.91018 0.91123 0.88505 0.88768 0.89171 0.90114 0.88557 0.87645 0.79649 0.94233 0.94465 0.78111 0.93585 0.89613 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.95 37.16 0.33 -0.35 16 2 C -0.10 -0.47 2.92 -90.62 -0.26 -0.74 16 3 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 4 C -0.10 -0.65 3.97 -26.73 -0.11 -0.75 16 5 C -0.14 -0.74 4.46 -27.88 -0.12 -0.87 16 6 C 0.53 4.84 7.85 -10.98 -0.09 4.75 16 7 O -0.53 -7.22 16.31 5.56 0.09 -7.13 16 8 N -0.62 -4.74 3.33 -170.52 -0.57 -5.31 16 9 C 0.10 0.44 6.69 -2.53 -0.02 0.42 16 10 C -0.14 -0.87 6.49 -24.58 -0.16 -1.03 16 11 C 0.14 1.19 3.97 -66.09 -0.26 0.93 16 12 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 13 N -0.29 -4.01 3.29 -52.98 -0.17 -4.19 16 14 C -0.04 -0.63 10.59 -17.05 -0.18 -0.81 16 15 C 0.00 -0.04 6.61 -82.78 -0.55 -0.58 16 16 C 0.23 4.90 6.82 -5.19 -0.04 4.86 16 17 N -0.73 -18.94 5.59 -61.09 -0.34 -19.28 16 18 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 N -0.25 -5.11 12.41 33.29 0.41 -4.70 16 27 N -0.09 -1.62 13.17 60.35 0.79 -0.83 16 28 C 0.10 0.92 6.63 -3.06 -0.02 0.90 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.10 0.39 6.27 -51.93 -0.33 0.07 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.23 7.48 -51.93 -0.39 -0.15 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.65 6.40 -51.92 -0.33 0.32 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.19 2.17 7.01 -52.48 -0.37 1.80 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.39 10.81 7.66 -40.82 -0.31 10.50 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -36.50 406.25 -7.71 -44.21 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.37 Total: 2.50 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.38 Total: -1.02 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.85 Total: -62.14 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.50 -7.71 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098612072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.303 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds