Wall clock time and date at job start Tue Mar 31 2020 20:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 C 1.53001 * 109.47358 * 239.99914 * 2 1 3 5 5 C 1.52997 * 109.46967 * 119.99708 * 2 1 3 6 6 C 1.50698 * 109.47055 * 60.00266 * 5 2 1 7 7 O 1.21280 * 120.00364 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99765 * 179.97438 * 6 5 2 9 9 C 1.47015 * 125.64929 * 359.97431 * 8 6 5 10 10 C 1.54325 * 107.27065 * 178.96227 * 9 8 6 11 11 C 1.55157 * 102.94374 * 337.80787 * 10 9 8 12 12 H 1.09000 * 111.00346 * 277.43176 * 11 10 9 13 13 N 1.46495 * 111.00828 * 153.57764 * 11 10 9 14 14 C 1.35311 * 125.86445 * 326.45310 * 13 11 10 15 15 C 1.35359 * 106.17461 * 180.02562 * 14 13 11 16 16 C 1.50702 * 126.75046 * 179.97438 * 15 14 13 17 17 N 1.46509 * 109.46821 * 94.99958 * 16 15 14 18 18 C 1.36935 * 120.00003 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99922 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47222 * 120.00574 * 22 20 18 25 25 H 1.48500 * 109.47208 * 240.00141 * 22 20 18 26 26 N 1.33773 * 106.49410 * 359.97438 * 15 14 13 27 27 N 1.28631 * 108.88502 * 359.73991 * 26 15 14 28 28 C 1.47425 * 125.64189 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.47784 * 300.00385 * 1 2 3 30 30 H 1.09011 * 109.47248 * 60.00099 * 1 2 3 31 31 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46968 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47299 * 299.99615 * 3 2 1 34 34 H 1.08999 * 109.47114 * 60.00224 * 3 2 1 35 35 H 1.08998 * 109.47201 * 300.00044 * 4 2 1 36 36 H 1.09000 * 109.46680 * 60.00180 * 4 2 1 37 37 H 1.08997 * 109.47012 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47262 * 300.00139 * 5 2 1 39 39 H 1.09003 * 109.46947 * 180.02562 * 5 2 1 40 40 H 1.09000 * 109.88350 * 59.54436 * 9 8 6 41 41 H 1.08997 * 110.01690 * 298.44952 * 9 8 6 42 42 H 1.08996 * 110.72124 * 219.44887 * 10 9 8 43 43 H 1.08999 * 110.87305 * 96.24314 * 10 9 8 44 44 H 1.07999 * 126.91754 * 0.02562 * 14 13 11 45 45 H 1.08997 * 109.47106 * 214.99783 * 16 15 14 46 46 H 1.08995 * 109.47027 * 335.00284 * 16 15 14 47 47 H 0.97000 * 119.99502 * 0.02562 * 17 16 15 48 48 H 0.96999 * 119.99770 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.36633 * 85.27695 * 28 8 6 50 50 H 1.08996 * 110.37033 * 322.94075 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5376 -2.1420 1.2493 7 8 0.8400 -2.5386 0.3399 8 7 1.8636 -2.9720 2.2599 9 6 2.6979 -2.6239 3.4193 10 6 2.7751 -3.8745 4.3202 11 6 1.5172 -4.6814 3.9031 12 1 0.6293 -4.3148 4.4182 13 7 1.7080 -6.1137 4.1448 14 6 2.8770 -6.7868 4.0381 15 6 2.5996 -8.0752 4.3465 16 6 3.5727 -9.2257 4.3726 17 7 4.0696 -9.4141 5.7379 18 6 4.9714 -10.4088 6.0071 19 1 5.3167 -11.0542 5.2129 20 6 5.4426 -10.5870 7.3006 21 7 5.0223 -9.8002 8.2683 22 14 6.6723 -11.9444 7.6679 23 1 6.9818 -12.6835 6.4177 24 1 7.9190 -11.3489 8.2121 25 1 6.0938 -12.8795 8.6660 26 7 1.2919 -8.1264 4.6236 27 7 0.7938 -6.9469 4.5007 28 6 1.4426 -4.3792 2.3858 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.6765 -0.2073 2.1393 39 1 3.1299 -0.7208 1.2495 40 1 2.2441 -1.7989 3.9684 41 1 3.6979 -2.3432 3.0886 42 1 2.7227 -3.5955 5.3726 43 1 3.6826 -4.4433 4.1182 44 1 3.8380 -6.3782 3.7625 45 1 3.0703 -10.1341 4.0402 46 1 4.4092 -9.0092 3.7082 47 1 3.7592 -8.8347 6.4512 48 1 5.3513 -9.9250 9.1722 49 1 2.1231 -5.0294 1.8359 50 1 0.4220 -4.5037 2.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098615575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:22 Heat of formation + Delta-G solvation = 77.839074 kcal Electronic energy + Delta-G solvation = -28727.018331 eV Core-core repulsion = 24792.065798 eV Total energy + Delta-G solvation = -3934.952533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.08182 -40.84735 -38.73813 -36.62480 -35.09644 -34.09547 -31.99926 -31.11682 -30.08646 -29.79281 -28.22156 -27.57045 -27.51859 -25.89614 -24.40836 -23.20241 -22.75353 -20.92351 -20.68821 -20.33382 -19.00481 -17.90743 -17.53526 -17.08657 -16.23132 -16.08566 -15.79707 -15.22269 -14.84460 -14.77555 -14.66447 -14.47198 -14.26113 -13.81518 -13.71831 -13.45752 -13.16308 -13.08242 -12.75558 -12.56535 -12.52546 -12.43647 -12.17315 -12.14667 -12.01505 -11.62804 -11.50127 -11.47744 -11.26594 -11.15466 -11.04588 -10.90692 -10.83292 -10.48434 -10.07394 -9.97753 -9.86291 -9.73471 -9.19943 -8.90721 -8.86840 -6.92649 -5.75042 -3.04610 1.72579 2.00727 2.17809 2.64348 2.87428 3.44794 3.50617 3.52896 3.65075 3.81219 4.15641 4.19371 4.28065 4.35054 4.40189 4.55067 4.62051 4.70908 4.74183 4.93468 4.99036 5.06410 5.07672 5.09928 5.20569 5.23887 5.26907 5.28414 5.35025 5.38499 5.48151 5.51813 5.57189 5.59176 5.62533 5.72881 5.74353 5.81014 5.86832 6.12578 6.16067 6.17593 6.37242 6.63483 6.70935 6.76825 6.94921 7.71089 7.71695 8.42207 8.79462 9.54215 10.09597 10.45666 11.47762 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.001902 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.935116 B =14716.123874 C =15038.994599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.127 4.127 6 C 0.533 3.467 7 O -0.523 6.523 8 N -0.621 5.621 9 C 0.103 3.897 10 C -0.143 4.143 11 C 0.135 3.865 12 H 0.129 0.871 13 N -0.293 5.293 14 C -0.043 4.043 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.092 5.092 28 C 0.101 3.899 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.187 0.813 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.080 0.920 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 26.323 -15.369 30.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.211 4.211 5 C -0.167 4.167 6 C 0.323 3.677 7 O -0.400 6.400 8 N -0.357 5.357 9 C -0.020 4.020 10 C -0.182 4.182 11 C 0.031 3.969 12 H 0.147 0.853 13 N -0.087 5.087 14 C -0.193 4.193 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.118 5.118 27 N -0.070 5.070 28 C -0.023 4.023 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.219 0.781 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.807 25.849 -15.620 30.959 hybrid contribution 1.809 -0.180 0.488 1.882 sum -4.998 25.669 -15.132 30.213 Atomic orbital electron populations 1.22113 0.93976 1.04070 1.00962 1.20301 0.96489 0.94601 0.93924 1.21896 1.00911 0.95126 1.02012 1.22112 1.00045 1.02776 0.96203 1.21788 1.02465 0.91689 1.00724 1.20474 0.79865 0.87202 0.80179 1.90624 1.37697 1.77055 1.34586 1.48455 1.51983 1.11799 1.23432 1.22071 0.96039 0.97595 0.86298 1.23139 0.97691 0.95671 1.01661 1.22592 1.01681 0.75588 0.97033 0.85320 1.47015 1.07110 1.08973 1.45559 1.23277 0.92570 0.93228 1.10274 1.22479 0.92829 0.95512 1.03091 1.18962 0.90511 0.90449 0.89801 1.42310 1.51898 1.39434 1.03408 1.19280 1.16211 1.07848 0.93640 0.90811 1.24760 1.00853 0.99565 0.95801 1.69692 1.47434 1.40424 1.00491 0.86084 0.80644 0.81370 0.77879 1.20458 1.21942 1.21848 1.75119 1.08820 1.11760 1.16097 1.78308 1.16379 0.94625 1.17716 1.22457 1.02897 0.83030 0.93908 0.93485 0.92953 0.89875 0.92617 0.92265 0.92636 0.89878 0.92947 0.93465 0.88773 0.88763 0.90251 0.90041 0.87885 0.88493 0.79553 0.94245 0.94440 0.78111 0.93578 0.90203 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.18 37.16 0.30 -0.85 16 2 C -0.05 -0.34 0.77 -154.51 -0.12 -0.46 16 3 C -0.14 -0.69 8.47 37.16 0.31 -0.38 16 4 C -0.15 -1.17 8.18 37.16 0.30 -0.87 16 5 C -0.13 -0.69 3.96 -27.89 -0.11 -0.81 16 6 C 0.53 4.45 7.26 -10.98 -0.08 4.37 16 7 O -0.52 -6.10 11.60 5.56 0.06 -6.04 16 8 N -0.62 -4.45 3.33 -170.54 -0.57 -5.02 16 9 C 0.10 0.45 6.49 -3.07 -0.02 0.43 16 10 C -0.14 -0.84 6.38 -24.90 -0.16 -1.00 16 11 C 0.14 1.17 4.08 -65.79 -0.27 0.91 16 12 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 13 N -0.29 -3.92 3.37 -52.69 -0.18 -4.10 16 14 C -0.04 -0.63 10.59 -17.04 -0.18 -0.81 16 15 C 0.00 -0.03 6.62 -82.77 -0.55 -0.58 16 16 C 0.23 4.83 6.82 -5.19 -0.04 4.79 16 17 N -0.73 -18.80 5.59 -61.08 -0.34 -19.14 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 N -0.25 -5.07 12.41 33.29 0.41 -4.65 16 27 N -0.09 -1.60 13.16 60.35 0.79 -0.81 16 28 C 0.10 0.88 6.60 -2.54 -0.02 0.86 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.82 5.51 -51.93 -0.29 0.53 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.83 5.51 -51.93 -0.29 0.54 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.60 6.39 -51.93 -0.33 0.27 16 44 H 0.19 2.05 7.02 -52.49 -0.37 1.68 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 10.75 7.66 -40.82 -0.31 10.44 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.93 8.04 -51.93 -0.42 0.52 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -35.27 399.81 -7.26 -42.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.31 Total: 3.30 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.86 Total: -1.73 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.85 Total: -61.46 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: 0.06 Total: -6.04 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.27 -7.26 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098615575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.374 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds