Wall clock time and date at job start Tue Mar 31 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 C 1.53001 * 109.47358 * 239.99914 * 2 1 3 5 5 C 1.52997 * 109.46967 * 119.99708 * 2 1 3 6 6 C 1.50698 * 109.47055 * 60.00266 * 5 2 1 7 7 O 1.21280 * 120.00364 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99765 * 179.97438 * 6 5 2 9 9 C 1.47015 * 125.64929 * 359.97431 * 8 6 5 10 10 C 1.54325 * 107.27065 * 178.96227 * 9 8 6 11 11 C 1.55157 * 102.94374 * 337.80787 * 10 9 8 12 12 H 1.09000 * 111.00346 * 277.43176 * 11 10 9 13 13 N 1.46495 * 111.00828 * 153.57764 * 11 10 9 14 14 C 1.35311 * 125.86445 * 326.45310 * 13 11 10 15 15 C 1.35359 * 106.17461 * 180.02562 * 14 13 11 16 16 C 1.50702 * 126.75046 * 179.97438 * 15 14 13 17 17 N 1.46509 * 109.46821 * 94.99958 * 16 15 14 18 18 C 1.36935 * 120.00003 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99922 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47222 * 120.00574 * 22 20 18 25 25 H 1.48500 * 109.47208 * 240.00141 * 22 20 18 26 26 N 1.33773 * 106.49410 * 359.97438 * 15 14 13 27 27 N 1.28631 * 108.88502 * 359.73991 * 26 15 14 28 28 C 1.47425 * 125.64189 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.47784 * 300.00385 * 1 2 3 30 30 H 1.09011 * 109.47248 * 60.00099 * 1 2 3 31 31 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46968 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47299 * 299.99615 * 3 2 1 34 34 H 1.08999 * 109.47114 * 60.00224 * 3 2 1 35 35 H 1.08998 * 109.47201 * 300.00044 * 4 2 1 36 36 H 1.09000 * 109.46680 * 60.00180 * 4 2 1 37 37 H 1.08997 * 109.47012 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47262 * 300.00139 * 5 2 1 39 39 H 1.09003 * 109.46947 * 180.02562 * 5 2 1 40 40 H 1.09000 * 109.88350 * 59.54436 * 9 8 6 41 41 H 1.08997 * 110.01690 * 298.44952 * 9 8 6 42 42 H 1.08996 * 110.72124 * 219.44887 * 10 9 8 43 43 H 1.08999 * 110.87305 * 96.24314 * 10 9 8 44 44 H 1.07999 * 126.91754 * 0.02562 * 14 13 11 45 45 H 1.08997 * 109.47106 * 214.99783 * 16 15 14 46 46 H 1.08995 * 109.47027 * 335.00284 * 16 15 14 47 47 H 0.97000 * 119.99502 * 0.02562 * 17 16 15 48 48 H 0.96999 * 119.99770 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.36633 * 85.27695 * 28 8 6 50 50 H 1.08996 * 110.37033 * 322.94075 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5376 -2.1420 1.2493 7 8 0.8400 -2.5386 0.3399 8 7 1.8636 -2.9720 2.2599 9 6 2.6979 -2.6239 3.4193 10 6 2.7751 -3.8745 4.3202 11 6 1.5172 -4.6814 3.9031 12 1 0.6293 -4.3148 4.4182 13 7 1.7080 -6.1137 4.1448 14 6 2.8770 -6.7868 4.0381 15 6 2.5996 -8.0752 4.3465 16 6 3.5727 -9.2257 4.3726 17 7 4.0696 -9.4141 5.7379 18 6 4.9714 -10.4088 6.0071 19 1 5.3167 -11.0542 5.2129 20 6 5.4426 -10.5870 7.3006 21 7 5.0223 -9.8002 8.2683 22 14 6.6723 -11.9444 7.6679 23 1 6.9818 -12.6835 6.4177 24 1 7.9190 -11.3489 8.2121 25 1 6.0938 -12.8795 8.6660 26 7 1.2919 -8.1264 4.6236 27 7 0.7938 -6.9469 4.5007 28 6 1.4426 -4.3792 2.3858 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.6765 -0.2073 2.1393 39 1 3.1299 -0.7208 1.2495 40 1 2.2441 -1.7989 3.9684 41 1 3.6979 -2.3432 3.0886 42 1 2.7227 -3.5955 5.3726 43 1 3.6826 -4.4433 4.1182 44 1 3.8380 -6.3782 3.7625 45 1 3.0703 -10.1341 4.0402 46 1 4.4092 -9.0092 3.7082 47 1 3.7592 -8.8347 6.4512 48 1 5.3513 -9.9250 9.1722 49 1 2.1231 -5.0294 1.8359 50 1 0.4220 -4.5037 2.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098615575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:21 Heat of formation + Delta-G solvation = 53.804167 kcal Electronic energy + Delta-G solvation = -28728.060563 eV Core-core repulsion = 24792.065798 eV Total energy + Delta-G solvation = -3935.994765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.32831 -41.45374 -39.37123 -37.22521 -36.80222 -35.25822 -33.71318 -31.99301 -31.62992 -30.47863 -28.84131 -28.10365 -28.00502 -27.64572 -25.18328 -24.81868 -23.85874 -22.24713 -21.67301 -20.88904 -19.53590 -19.36768 -18.57934 -18.09689 -17.33466 -16.87470 -16.58308 -16.44319 -16.01894 -15.75673 -15.55567 -15.22851 -15.19915 -15.04084 -14.76457 -14.42625 -14.25734 -14.21844 -13.66892 -13.53049 -13.18705 -13.06558 -12.96414 -12.91417 -12.81945 -12.79022 -12.65490 -12.56934 -12.21757 -12.02912 -12.02195 -12.00929 -11.89198 -11.79220 -11.61468 -11.52467 -11.08393 -10.96147 -10.53577 -10.25257 -9.76015 -9.00914 -7.92452 -5.22641 0.54302 1.13414 1.44213 1.51474 1.53034 1.59498 1.62868 1.97416 2.60328 3.01230 3.17590 3.36352 3.43479 3.63503 3.67355 3.80592 3.86041 3.92479 3.94747 4.09129 4.20693 4.22353 4.25711 4.32411 4.51041 4.57692 4.58931 4.64066 4.67769 4.74678 4.81859 4.85926 4.86483 4.87825 4.96522 5.00132 5.06001 5.11581 5.12187 5.17918 5.18381 5.27161 5.41099 5.52728 5.52993 5.61660 5.64187 6.27500 6.40363 7.13525 7.34552 7.48034 8.05302 8.31570 9.31552 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.001902 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.935116 B =14716.123874 C =15038.994599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.054 4.054 3 C -0.137 4.137 4 C -0.152 4.152 5 C -0.120 4.120 6 C 0.525 3.475 7 O -0.565 6.565 8 N -0.618 5.618 9 C 0.104 3.896 10 C -0.136 4.136 11 C 0.127 3.873 12 H 0.137 0.863 13 N -0.275 5.275 14 C -0.015 4.015 15 C -0.035 4.035 16 C 0.235 3.765 17 N -0.738 5.738 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.298 1.298 26 N -0.297 5.297 27 N -0.111 5.111 28 C 0.107 3.893 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.227 0.773 45 H 0.028 0.972 46 H 0.064 0.936 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 28.742 -15.550 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.209 4.209 5 C -0.160 4.160 6 C 0.317 3.683 7 O -0.445 6.445 8 N -0.353 5.353 9 C -0.017 4.017 10 C -0.175 4.175 11 C 0.025 3.975 12 H 0.155 0.845 13 N -0.069 5.069 14 C -0.166 4.166 15 C -0.174 4.174 16 C 0.107 3.893 17 N -0.381 5.381 18 C -0.374 4.374 19 H 0.102 0.898 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.218 1.218 25 H -0.225 1.225 26 N -0.163 5.163 27 N -0.090 5.090 28 C -0.018 4.018 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.243 0.757 45 H 0.045 0.955 46 H 0.082 0.918 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.771 28.289 -15.834 32.768 hybrid contribution 1.089 -0.845 0.423 1.442 sum -3.683 27.444 -15.411 31.690 Atomic orbital electron populations 1.22065 0.95188 1.02320 1.01347 1.20324 0.95529 0.95764 0.93857 1.21847 1.01538 0.93628 1.02425 1.22066 1.00543 1.01263 0.97072 1.21841 1.03714 0.89369 1.01036 1.21109 0.79264 0.88303 0.79631 1.90630 1.39602 1.77935 1.36286 1.48516 1.51980 1.10746 1.24103 1.22315 0.97072 0.97351 0.85002 1.23216 0.95745 0.95663 1.02853 1.23009 1.04066 0.73126 0.97310 0.84517 1.47339 1.06145 1.10270 1.43155 1.23678 0.93912 0.91748 1.07304 1.22303 0.92387 0.96694 1.05976 1.18976 0.91575 0.91136 0.87596 1.42500 1.51707 1.38796 1.05064 1.19728 1.15753 1.07924 0.93957 0.89808 1.25622 1.03294 1.02217 0.95800 1.69855 1.49249 1.42479 1.00646 0.85004 0.78033 0.78397 0.77876 1.18673 1.21765 1.22535 1.75044 1.09975 1.13479 1.17839 1.78199 1.17340 0.94543 1.18883 1.22233 1.01655 0.84384 0.93547 0.92424 0.93237 0.92615 0.91537 0.92675 0.91481 0.92635 0.93222 0.92498 0.86362 0.86475 0.87659 0.87634 0.86576 0.88263 0.75688 0.95456 0.91822 0.79734 0.94075 0.90993 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 71.98 0.59 -1.59 16 2 C -0.05 -0.60 0.77 -52.18 -0.04 -0.64 16 3 C -0.14 -0.94 8.47 71.98 0.61 -0.33 16 4 C -0.15 -2.22 8.18 71.98 0.59 -1.63 16 5 C -0.12 -0.94 3.96 29.85 0.12 -0.82 16 6 C 0.53 7.97 7.26 87.66 0.64 8.60 16 7 O -0.57 -13.47 11.60 -3.03 -0.04 -13.51 16 8 N -0.62 -7.44 3.33 -811.84 -2.70 -10.15 16 9 C 0.10 0.46 6.49 86.73 0.56 1.02 16 10 C -0.14 -1.11 6.38 31.78 0.20 -0.91 16 11 C 0.13 1.97 4.08 46.38 0.19 2.16 16 12 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 13 N -0.28 -7.08 3.37 -320.61 -1.08 -8.17 16 14 C -0.01 -0.41 10.59 83.49 0.88 0.48 16 15 C -0.04 -1.31 6.62 41.60 0.28 -1.04 16 16 C 0.23 9.75 6.82 85.63 0.58 10.33 16 17 N -0.74 -38.44 5.59 -347.17 -1.94 -40.38 16 18 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 22 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 N -0.30 -12.28 12.41 -48.59 -0.60 -12.89 16 27 N -0.11 -3.92 13.16 37.02 0.49 -3.43 16 28 C 0.11 1.76 6.60 86.85 0.57 2.33 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 1.14 5.51 -2.39 -0.01 1.12 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.05 1.15 5.51 -2.39 -0.01 1.13 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 0.82 6.39 -2.39 -0.02 0.80 16 44 H 0.23 4.15 7.02 -2.91 -0.02 4.13 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.37 21.11 7.66 -92.71 -0.71 20.40 16 48 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 Total: -1.00 -80.23 399.81 3.74 -76.50 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.23 Total: 22.50 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 7.08 Total: 1.30 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -5.56 Total: -134.86 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.04 Total: -13.51 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -80.23 3.74 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098615575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.300 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds