Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.53000 * 109.47118 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47013 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00267 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99782 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.64988 * 0.04723 * 8 6 5 10 10 C 1.54319 * 107.27550 * 181.02069 * 9 8 6 11 11 C 1.55164 * 102.94174 * 22.19087 * 10 9 8 12 12 H 1.08998 * 111.03428 * 82.58167 * 11 10 9 13 13 N 1.46492 * 111.00696 * 206.42755 * 11 10 9 14 14 C 1.35317 * 125.86956 * 27.20835 * 13 11 10 15 15 C 1.35349 * 106.17446 * 179.97438 * 14 13 11 16 16 C 1.50703 * 126.75129 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47470 * 95.04643 * 16 15 14 18 18 C 1.36932 * 120.00287 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99540 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00200 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47086 * 119.99992 * 22 20 18 25 25 H 1.48498 * 109.47049 * 239.99941 * 22 20 18 26 26 N 1.33777 * 106.49799 * 0.02562 * 15 14 13 27 27 N 1.28634 * 108.88349 * 359.97438 * 26 15 14 28 28 C 1.47423 * 125.64795 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.46564 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47112 * 299.99817 * 1 2 3 31 31 H 1.09000 * 109.46529 * 60.00146 * 1 2 3 32 32 H 1.08998 * 109.47676 * 239.99703 * 2 1 3 33 33 H 1.09002 * 109.47262 * 119.99803 * 2 1 3 34 34 H 1.09001 * 109.46979 * 60.00102 * 3 2 1 35 35 H 1.08998 * 109.47348 * 299.99921 * 3 2 1 36 36 H 1.08998 * 109.47676 * 59.99703 * 4 3 2 37 37 H 1.09002 * 109.47262 * 299.99803 * 4 3 2 38 38 H 1.09001 * 109.46979 * 60.00102 * 5 4 3 39 39 H 1.08998 * 109.47348 * 299.99921 * 5 4 3 40 40 H 1.08999 * 109.88111 * 300.43764 * 9 8 6 41 41 H 1.08999 * 109.88555 * 61.59948 * 9 8 6 42 42 H 1.08999 * 110.72403 * 263.83290 * 10 9 8 43 43 H 1.08995 * 110.72599 * 140.55478 * 10 9 8 44 44 H 1.07994 * 126.91360 * 359.93700 * 14 13 11 45 45 H 1.09001 * 109.47240 * 215.04786 * 16 15 14 46 46 H 1.09006 * 109.46803 * 335.04653 * 16 15 14 47 47 H 0.97002 * 119.99348 * 0.02562 * 17 16 15 48 48 H 0.96997 * 120.00045 * 179.97438 * 21 20 18 49 49 H 1.08998 * 110.36934 * 37.07066 * 28 8 6 50 50 H 1.09001 * 110.36928 * 274.74454 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.5870 2.8850 0.0026 7 8 6.1935 1.8347 0.0024 8 7 6.2609 4.0522 0.0028 9 6 5.6547 5.3916 0.0029 10 6 6.8080 6.4166 -0.0231 11 6 7.9886 5.5966 -0.6075 12 1 7.9404 5.5625 -1.6958 13 7 9.2749 6.1347 -0.1581 14 6 9.4923 6.8126 0.9926 15 6 10.8105 7.1193 1.0062 16 6 11.5496 7.8746 2.0807 17 7 12.1610 6.9243 3.0131 18 6 12.8891 7.3826 4.0785 19 1 13.0121 8.4446 4.2316 20 6 13.4689 6.4822 4.9616 21 7 13.3193 5.1880 4.7747 22 14 14.4614 7.1073 6.4154 23 1 14.4792 8.5921 6.4008 24 1 13.8424 6.6315 7.6787 25 1 15.8522 6.5952 6.3221 26 7 11.3282 6.6211 -0.1223 27 7 10.3926 6.0437 -0.7900 28 6 7.7280 4.1973 0.0034 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9338 0.9285 -0.8890 37 1 3.9330 0.9288 0.8909 38 1 3.7163 3.3986 0.8913 39 1 3.7171 3.3991 -0.8887 40 1 5.0289 5.5153 -0.8810 41 1 5.0575 5.5282 0.9044 42 1 7.0398 6.7620 0.9844 43 1 6.5629 7.2566 -0.6730 44 1 8.7611 7.0598 1.7479 45 1 12.3270 8.4876 1.6247 46 1 10.8516 8.5150 2.6202 47 1 12.0508 5.9705 2.8753 48 1 13.7248 4.5588 5.3916 49 1 8.1860 3.4233 -0.6123 50 1 8.1134 4.1506 1.0220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098615589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = 38.059714 kcal Electronic energy + Delta-G solvation = -27966.398129 eV Core-core repulsion = 24029.720634 eV Total energy + Delta-G solvation = -3936.677495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.33012 -41.25426 -39.00797 -36.86919 -36.80043 -35.27591 -33.74065 -33.18919 -31.83397 -31.57239 -30.18280 -28.14090 -27.63068 -25.43055 -24.83153 -23.91615 -23.09489 -22.20888 -21.84126 -21.61535 -20.25177 -19.39827 -18.60260 -18.11788 -17.41843 -17.13417 -16.67212 -16.55058 -16.30440 -15.95030 -15.57402 -15.46380 -15.09657 -14.75652 -14.64068 -14.46614 -14.29267 -14.09406 -13.91347 -13.84095 -13.66277 -13.11411 -13.04191 -12.87727 -12.81113 -12.80425 -12.58721 -12.55756 -12.04607 -12.03456 -11.90173 -11.87048 -11.81415 -11.79206 -11.68381 -11.36449 -11.16469 -10.97858 -10.93286 -10.25469 -9.85001 -9.02562 -7.93740 -5.24406 0.53018 1.14167 1.43578 1.50329 1.51810 1.53223 1.61807 1.94464 2.59341 2.96914 3.19037 3.36230 3.42997 3.61169 3.66020 3.83906 3.87912 3.92184 4.01925 4.08692 4.20963 4.22979 4.27350 4.29690 4.33940 4.44015 4.50136 4.57650 4.64353 4.71405 4.74776 4.82667 4.86418 4.86974 4.96049 4.98243 5.01663 5.09527 5.11706 5.11971 5.19054 5.25521 5.37607 5.45707 5.51374 5.53850 5.63757 6.25666 6.34536 7.03740 7.32384 7.47874 8.04021 8.29353 9.30465 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.001912 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.751074 B =14637.141142 C =15903.404390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.107 4.107 5 C -0.122 4.122 6 C 0.520 3.480 7 O -0.593 6.593 8 N -0.618 5.618 9 C 0.101 3.899 10 C -0.131 4.131 11 C 0.130 3.870 12 H 0.143 0.857 13 N -0.277 5.277 14 C -0.014 4.014 15 C -0.037 4.037 16 C 0.235 3.765 17 N -0.741 5.741 18 C -0.241 4.241 19 H 0.087 0.913 20 C -0.080 4.080 21 N -0.975 5.975 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.292 1.292 25 H -0.299 1.299 26 N -0.296 5.296 27 N -0.113 5.113 28 C 0.099 3.901 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.030 0.970 46 H 0.067 0.933 47 H 0.369 0.631 48 H 0.249 0.751 49 H 0.066 0.934 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.139 1.182 -12.937 35.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.161 4.161 6 C 0.311 3.689 7 O -0.473 6.473 8 N -0.353 5.353 9 C -0.021 4.021 10 C -0.169 4.169 11 C 0.028 3.972 12 H 0.161 0.839 13 N -0.070 5.070 14 C -0.165 4.165 15 C -0.175 4.175 16 C 0.107 3.893 17 N -0.383 5.383 18 C -0.372 4.372 19 H 0.105 0.895 20 C -0.272 4.272 21 N -0.626 5.626 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.220 1.220 25 H -0.226 1.226 26 N -0.163 5.163 27 N -0.091 5.091 28 C -0.027 4.027 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.150 0.850 44 H 0.245 0.755 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.200 0.800 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.117 0.193 -14.143 35.094 hybrid contribution 0.911 -0.545 1.630 1.946 sum -31.206 -0.352 -12.512 33.623 Atomic orbital electron populations 1.21764 0.95036 1.01779 1.02255 1.21564 0.96517 0.97280 1.01541 1.21574 0.93097 0.96864 1.03300 1.21355 0.96300 0.95069 1.01786 1.21735 0.87176 1.00054 1.07151 1.21423 0.91925 0.81196 0.74342 1.90735 1.71849 1.32735 1.51947 1.48510 1.05429 1.07673 1.73641 1.22443 0.95783 0.77887 1.05958 1.23250 0.90485 0.98681 1.04532 1.23020 0.78084 0.93562 1.02534 0.83936 1.47354 1.09329 1.35945 1.14420 1.23715 0.98780 1.01171 0.92857 1.22334 0.93219 1.05400 0.96563 1.19004 0.94119 0.90336 0.85805 1.42548 1.62214 1.04834 1.28721 1.19759 1.23211 0.92905 1.01328 0.89475 1.25663 1.03211 0.95427 1.02858 1.69874 1.51013 1.01612 1.40099 0.84982 0.77349 0.78246 0.78610 1.18248 1.21953 1.22610 1.75045 1.23522 1.11416 1.06324 1.78199 0.88637 1.20557 1.21721 1.22266 0.83322 0.96273 1.00823 0.92947 0.92323 0.92116 0.92633 0.92913 0.90743 0.90387 0.93044 0.93504 0.86072 0.85510 0.86884 0.87589 0.88142 0.84963 0.75476 0.95236 0.91495 0.80007 0.94185 0.91543 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.11 -0.88 5.21 30.59 0.16 -0.72 16 4 C -0.11 -1.39 4.50 30.59 0.14 -1.25 16 5 C -0.12 -1.07 4.89 29.85 0.15 -0.93 16 6 C 0.52 9.85 7.85 87.66 0.69 10.54 16 7 O -0.59 -18.27 16.24 -3.02 -0.05 -18.32 16 8 N -0.62 -9.11 3.33 -811.85 -2.70 -11.81 16 9 C 0.10 0.38 6.49 86.73 0.56 0.94 16 10 C -0.13 -0.73 6.31 31.78 0.20 -0.53 16 11 C 0.13 2.03 4.12 46.38 0.19 2.22 16 12 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 13 N -0.28 -7.15 3.40 -320.62 -1.09 -8.24 16 14 C -0.01 -0.37 10.61 83.49 0.89 0.51 16 15 C -0.04 -1.37 6.62 41.60 0.28 -1.10 16 16 C 0.23 9.70 6.82 85.63 0.58 10.29 16 17 N -0.74 -39.24 5.59 -347.17 -1.94 -41.18 16 18 C -0.24 -13.58 9.99 84.03 0.84 -12.75 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 21 N -0.97 -62.18 13.06 21.65 0.28 -61.89 16 22 Si 0.98 46.79 29.55 68.60 2.03 48.81 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 N -0.30 -12.32 12.41 -48.60 -0.60 -12.92 16 27 N -0.11 -4.00 13.16 37.02 0.49 -3.51 16 28 C 0.10 2.05 6.60 86.85 0.57 2.62 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.10 0.56 6.24 -2.39 -0.01 0.54 16 43 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.23 4.07 6.81 -2.91 -0.02 4.05 16 45 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 47 H 0.37 21.64 7.66 -92.71 -0.71 20.93 16 48 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 49 H 0.07 1.73 8.04 -2.39 -0.02 1.72 16 50 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -87.09 410.77 3.23 -83.85 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.21 Total: 21.24 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.60 Total: 3.97 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -5.56 Total: -139.55 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -87.09 3.23 -83.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098615589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.914 kcal (2) G-P(sol) polarization free energy of solvation -87.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds