Wall clock time and date at job start Tue Mar 31 2020 20:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 C 1.53005 * 109.47038 * 185.46182 * 3 2 1 5 5 C 1.52991 * 109.47163 * 64.99580 * 4 3 2 6 6 C 1.50700 * 109.47374 * 65.46287 * 3 2 1 7 7 O 1.21279 * 120.00253 * 35.03815 * 6 3 2 8 8 N 1.34781 * 119.99967 * 215.04210 * 6 3 2 9 9 C 1.47425 * 125.64693 * 355.00899 * 8 6 3 10 10 C 1.54907 * 104.83114 * 204.09463 * 9 8 6 11 11 C 1.55158 * 101.58241 * 322.99152 * 10 9 8 12 12 H 1.08995 * 110.72201 * 276.96072 * 11 10 9 13 13 N 1.46497 * 110.71941 * 153.86445 * 11 10 9 14 14 C 1.35316 * 125.87264 * 326.45660 * 13 11 10 15 15 C 1.35351 * 106.17852 * 180.02562 * 14 13 11 16 16 C 1.50698 * 126.74839 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47126 * 95.00165 * 16 15 14 18 18 C 1.36926 * 120.00158 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00082 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47152 * 90.00025 * 22 20 18 24 24 H 1.48494 * 109.47132 * 210.00367 * 22 20 18 25 25 H 1.48507 * 109.47183 * 330.00338 * 22 20 18 26 26 N 1.33763 * 106.49525 * 359.97438 * 15 14 13 27 27 N 1.28639 * 108.88998 * 359.73755 * 26 15 14 28 28 C 1.47018 * 125.64682 * 174.70418 * 8 6 3 29 29 H 1.09003 * 109.46766 * 54.95272 * 1 2 3 30 30 H 1.09002 * 109.46741 * 174.95044 * 1 2 3 31 31 H 1.08991 * 109.47409 * 294.95402 * 1 2 3 32 32 H 1.09007 * 109.46944 * 119.99600 * 2 1 3 33 33 H 1.08990 * 109.47280 * 239.99809 * 2 1 3 34 34 H 1.09001 * 109.47311 * 305.45634 * 3 2 1 35 35 H 1.08995 * 109.47026 * 185.00452 * 4 3 2 36 36 H 1.09003 * 109.46686 * 304.99740 * 4 3 2 37 37 H 1.09004 * 109.47252 * 180.02562 * 5 4 3 38 38 H 1.08995 * 109.47861 * 300.00361 * 5 4 3 39 39 H 1.09003 * 109.47189 * 60.00468 * 5 4 3 40 40 H 1.08996 * 110.36520 * 322.93531 * 9 8 6 41 41 H 1.09005 * 110.36041 * 85.14706 * 9 8 6 42 42 H 1.08996 * 111.00397 * 81.06493 * 10 9 8 43 43 H 1.09001 * 111.00250 * 204.92205 * 10 9 8 44 44 H 1.08002 * 126.90358 * 0.02562 * 14 13 11 45 45 H 1.09004 * 109.47062 * 214.99894 * 16 15 14 46 46 H 1.08998 * 109.47542 * 335.00522 * 16 15 14 47 47 H 0.97005 * 119.99319 * 359.97438 * 17 16 15 48 48 H 0.97003 * 120.00118 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.88781 * 298.39201 * 28 8 6 50 50 H 1.09002 * 109.88267 * 59.56200 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4447 -0.1373 5 6 3.9536 0.8776 -1.5037 6 6 1.6511 2.1128 1.2925 7 8 1.6293 1.4750 2.3238 8 7 1.3275 3.4212 1.3023 9 6 1.4110 4.3356 0.1490 10 6 1.5487 5.7474 0.7715 11 6 0.6230 5.6328 2.0113 12 1 -0.4164 5.8085 1.7342 13 7 1.0427 6.5661 3.0596 14 6 2.3160 6.9388 3.3261 15 6 2.2460 7.8053 4.3635 16 6 3.4006 8.5041 5.0340 17 7 3.5769 9.8330 4.4430 18 6 4.5721 10.6572 4.8959 19 1 5.2275 10.3275 5.6885 20 6 4.7394 11.9162 4.3355 21 7 3.9411 12.3178 3.3693 22 14 6.0967 13.0409 4.9538 23 1 7.3346 12.8002 4.1697 24 1 5.6773 14.4565 4.7949 25 1 6.3572 12.7599 6.3886 26 7 0.9505 7.9192 4.6765 27 7 0.2632 7.1771 3.8818 28 6 0.8266 4.1712 2.4634 29 1 -0.3633 0.5902 -0.8414 30 1 -0.3633 -1.0237 -0.0905 31 1 -0.3634 0.4335 0.9316 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.5990 1.9838 -0.8371 35 1 3.9352 2.4656 -0.0482 36 1 4.0004 0.8294 0.6495 37 1 5.0393 0.8787 -1.6014 38 1 3.5823 -0.1433 -1.5928 39 1 3.5171 1.4929 -2.2905 40 1 2.2856 4.1017 -0.4580 41 1 0.5043 4.2711 -0.4527 42 1 2.5784 5.9442 1.0696 43 1 1.1890 6.5138 0.0849 44 1 3.2084 6.6107 2.8139 45 1 3.1950 8.6048 6.0997 46 1 4.3102 7.9203 4.8930 47 1 2.9885 10.1289 3.7308 48 1 4.0578 13.1977 2.9779 49 1 -0.1212 3.7488 2.7968 50 1 1.5566 4.1335 3.2720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098618900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:35 Heat of formation + Delta-G solvation = 70.134138 kcal Electronic energy + Delta-G solvation = -28954.640255 eV Core-core repulsion = 25019.353611 eV Total energy + Delta-G solvation = -3935.286644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.07398 -40.79536 -38.43743 -36.22152 -35.07949 -34.03104 -32.20814 -31.95246 -30.96390 -30.00033 -29.53528 -27.63184 -25.88279 -24.66152 -23.26731 -23.19564 -22.73676 -21.77338 -20.89143 -20.54156 -19.38529 -18.09294 -17.57221 -17.11933 -16.37287 -16.01788 -15.84819 -15.16912 -14.87112 -14.82099 -14.54321 -14.32749 -14.25187 -14.07219 -13.64829 -13.41973 -13.21444 -13.00935 -12.85690 -12.81369 -12.57570 -12.52291 -12.34593 -12.23638 -12.04431 -11.94519 -11.50944 -11.38043 -11.25453 -11.20432 -10.97931 -10.90469 -10.80497 -10.47407 -10.15752 -10.08738 -9.89344 -9.72553 -9.19689 -8.89480 -8.85759 -6.91779 -5.73976 -3.03464 1.73948 2.05478 2.20482 2.63029 2.88815 3.45624 3.51003 3.53132 3.66154 3.73794 4.08705 4.22112 4.26755 4.36722 4.39316 4.56463 4.63015 4.72404 4.74741 4.75609 4.88119 4.92552 4.97954 5.08119 5.08749 5.17698 5.24176 5.27624 5.30359 5.33668 5.35631 5.48408 5.49577 5.55654 5.61345 5.62499 5.65802 5.74836 5.82072 5.83132 5.88151 6.17195 6.38572 6.64994 6.72416 6.78044 6.94928 7.71505 7.72036 8.43249 8.80576 9.55158 10.10596 10.46829 11.48792 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002177 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.552031 B =12861.086488 C =13650.682672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.152 4.152 6 C 0.538 3.462 7 O -0.531 6.531 8 N -0.621 5.621 9 C 0.101 3.899 10 C -0.143 4.143 11 C 0.138 3.862 12 H 0.130 0.870 13 N -0.294 5.294 14 C -0.042 4.042 15 C -0.002 4.002 16 C 0.232 3.768 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.250 5.250 27 N -0.093 5.093 28 C 0.101 3.899 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.186 0.814 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.085 0.915 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -26.277 -14.929 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.123 4.123 4 C -0.153 4.153 5 C -0.209 4.209 6 C 0.327 3.673 7 O -0.406 6.406 8 N -0.356 5.356 9 C -0.022 4.022 10 C -0.182 4.182 11 C 0.034 3.966 12 H 0.148 0.852 13 N -0.088 5.088 14 C -0.192 4.192 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.118 5.118 27 N -0.071 5.071 28 C -0.024 4.024 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.884 -26.437 -13.801 30.606 hybrid contribution 1.502 0.731 -0.449 1.729 sum -5.383 -25.706 -14.250 29.880 Atomic orbital electron populations 1.21814 0.95589 1.02036 1.01842 1.21518 0.96168 0.93948 1.03318 1.21446 0.98033 0.97871 0.94942 1.21468 0.92522 1.02231 0.99052 1.21820 1.01684 1.01346 0.96074 1.20454 0.75987 0.79584 0.91289 1.90728 1.52150 1.63189 1.34537 1.48470 1.66512 1.08961 1.11705 1.22394 1.03155 0.87565 0.89089 1.23302 1.01394 0.97649 0.95887 1.22486 1.01920 0.86872 0.85338 0.85206 1.47096 1.05693 1.31183 1.24853 1.23264 0.89259 1.04009 1.02646 1.22465 0.94311 0.99583 0.97562 1.18960 0.88862 0.86710 0.95183 1.42299 1.38763 1.11894 1.44071 1.19233 1.07135 0.95463 1.15159 0.90881 1.24760 0.99526 0.97731 0.98962 1.69680 1.39973 1.20062 1.28366 0.86152 0.81340 0.80232 0.78235 1.21752 1.21797 1.20657 1.75108 1.03532 1.14870 1.18283 1.78297 1.19946 1.07874 1.00973 1.22191 1.01285 0.89115 0.89759 0.92825 0.92305 0.92623 0.90502 0.90631 0.89118 0.91460 0.90903 0.92160 0.92122 0.92447 0.89194 0.90169 0.88550 0.87634 0.79668 0.94240 0.94471 0.78111 0.93533 0.89661 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.65 37.16 0.36 -0.63 16 2 C -0.11 -0.70 5.04 -26.73 -0.13 -0.84 16 3 C -0.10 -0.63 1.63 -91.77 -0.15 -0.78 16 4 C -0.11 -0.65 5.38 -26.73 -0.14 -0.80 16 5 C -0.15 -0.63 9.67 37.15 0.36 -0.27 16 6 C 0.54 5.06 5.98 -10.98 -0.07 5.00 16 7 O -0.53 -7.21 16.32 5.56 0.09 -7.12 16 8 N -0.62 -4.89 3.33 -170.52 -0.57 -5.45 16 9 C 0.10 0.47 6.17 -2.53 -0.02 0.46 16 10 C -0.14 -0.89 6.49 -24.58 -0.16 -1.05 16 11 C 0.14 1.21 3.97 -66.09 -0.26 0.95 16 12 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 13 N -0.29 -4.03 3.29 -52.98 -0.17 -4.20 16 14 C -0.04 -0.62 10.59 -17.05 -0.18 -0.81 16 15 C 0.00 -0.03 6.61 -82.78 -0.55 -0.58 16 16 C 0.23 4.91 6.82 -5.19 -0.04 4.88 16 17 N -0.73 -18.98 5.59 -61.08 -0.34 -19.32 16 18 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 N -0.25 -5.12 12.41 33.29 0.41 -4.71 16 27 N -0.09 -1.62 13.17 60.35 0.79 -0.83 16 28 C 0.10 0.93 6.64 -3.06 -0.02 0.91 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.46 7.42 -51.93 -0.39 0.08 16 32 H 0.08 0.62 7.66 -51.92 -0.40 0.22 16 33 H 0.08 0.35 6.33 -51.93 -0.33 0.02 16 34 H 0.09 0.39 7.13 -51.93 -0.37 0.02 16 35 H 0.07 0.37 7.99 -51.93 -0.41 -0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.23 6.45 -51.93 -0.34 -0.10 16 39 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.29 7.52 -51.93 -0.39 -0.10 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 0.67 6.39 -51.93 -0.33 0.34 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.19 2.20 7.01 -52.49 -0.37 1.83 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.39 10.84 7.66 -40.82 -0.31 10.52 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.92 8.03 -51.93 -0.42 0.51 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -36.27 403.44 -7.49 -43.76 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.25 Total: 3.14 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.24 Total: -0.95 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.85 Total: -62.41 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.27 -7.49 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.897 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds