Wall clock time and date at job start Tue Mar 31 2020 20:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 C 1.53005 * 109.47038 * 185.46182 * 3 2 1 5 5 C 1.52991 * 109.47163 * 64.99580 * 4 3 2 6 6 C 1.50700 * 109.47374 * 65.46287 * 3 2 1 7 7 O 1.21279 * 120.00253 * 35.03815 * 6 3 2 8 8 N 1.34781 * 119.99967 * 215.04210 * 6 3 2 9 9 C 1.47425 * 125.64693 * 355.00899 * 8 6 3 10 10 C 1.54907 * 104.83114 * 204.09463 * 9 8 6 11 11 C 1.55158 * 101.58241 * 322.99152 * 10 9 8 12 12 H 1.08995 * 110.72201 * 276.96072 * 11 10 9 13 13 N 1.46497 * 110.71941 * 153.86445 * 11 10 9 14 14 C 1.35316 * 125.87264 * 326.45660 * 13 11 10 15 15 C 1.35351 * 106.17852 * 180.02562 * 14 13 11 16 16 C 1.50698 * 126.74839 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47126 * 95.00165 * 16 15 14 18 18 C 1.36926 * 120.00158 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00082 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47152 * 90.00025 * 22 20 18 24 24 H 1.48494 * 109.47132 * 210.00367 * 22 20 18 25 25 H 1.48507 * 109.47183 * 330.00338 * 22 20 18 26 26 N 1.33763 * 106.49525 * 359.97438 * 15 14 13 27 27 N 1.28639 * 108.88998 * 359.73755 * 26 15 14 28 28 C 1.47018 * 125.64682 * 174.70418 * 8 6 3 29 29 H 1.09003 * 109.46766 * 54.95272 * 1 2 3 30 30 H 1.09002 * 109.46741 * 174.95044 * 1 2 3 31 31 H 1.08991 * 109.47409 * 294.95402 * 1 2 3 32 32 H 1.09007 * 109.46944 * 119.99600 * 2 1 3 33 33 H 1.08990 * 109.47280 * 239.99809 * 2 1 3 34 34 H 1.09001 * 109.47311 * 305.45634 * 3 2 1 35 35 H 1.08995 * 109.47026 * 185.00452 * 4 3 2 36 36 H 1.09003 * 109.46686 * 304.99740 * 4 3 2 37 37 H 1.09004 * 109.47252 * 180.02562 * 5 4 3 38 38 H 1.08995 * 109.47861 * 300.00361 * 5 4 3 39 39 H 1.09003 * 109.47189 * 60.00468 * 5 4 3 40 40 H 1.08996 * 110.36520 * 322.93531 * 9 8 6 41 41 H 1.09005 * 110.36041 * 85.14706 * 9 8 6 42 42 H 1.08996 * 111.00397 * 81.06493 * 10 9 8 43 43 H 1.09001 * 111.00250 * 204.92205 * 10 9 8 44 44 H 1.08002 * 126.90358 * 0.02562 * 14 13 11 45 45 H 1.09004 * 109.47062 * 214.99894 * 16 15 14 46 46 H 1.08998 * 109.47542 * 335.00522 * 16 15 14 47 47 H 0.97005 * 119.99319 * 359.97438 * 17 16 15 48 48 H 0.97003 * 120.00118 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.88781 * 298.39201 * 28 8 6 50 50 H 1.09002 * 109.88267 * 59.56200 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5638 1.4447 -0.1373 5 6 3.9536 0.8776 -1.5037 6 6 1.6511 2.1128 1.2925 7 8 1.6293 1.4750 2.3238 8 7 1.3275 3.4212 1.3023 9 6 1.4110 4.3356 0.1490 10 6 1.5487 5.7474 0.7715 11 6 0.6230 5.6328 2.0113 12 1 -0.4164 5.8085 1.7342 13 7 1.0427 6.5661 3.0596 14 6 2.3160 6.9388 3.3261 15 6 2.2460 7.8053 4.3635 16 6 3.4006 8.5041 5.0340 17 7 3.5769 9.8330 4.4430 18 6 4.5721 10.6572 4.8959 19 1 5.2275 10.3275 5.6885 20 6 4.7394 11.9162 4.3355 21 7 3.9411 12.3178 3.3693 22 14 6.0967 13.0409 4.9538 23 1 7.3346 12.8002 4.1697 24 1 5.6773 14.4565 4.7949 25 1 6.3572 12.7599 6.3886 26 7 0.9505 7.9192 4.6765 27 7 0.2632 7.1771 3.8818 28 6 0.8266 4.1712 2.4634 29 1 -0.3633 0.5902 -0.8414 30 1 -0.3633 -1.0237 -0.0905 31 1 -0.3634 0.4335 0.9316 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.5990 1.9838 -0.8371 35 1 3.9352 2.4656 -0.0482 36 1 4.0004 0.8294 0.6495 37 1 5.0393 0.8787 -1.6014 38 1 3.5823 -0.1433 -1.5928 39 1 3.5171 1.4929 -2.2905 40 1 2.2856 4.1017 -0.4580 41 1 0.5043 4.2711 -0.4527 42 1 2.5784 5.9442 1.0696 43 1 1.1890 6.5138 0.0849 44 1 3.2084 6.6107 2.8139 45 1 3.1950 8.6048 6.0997 46 1 4.3102 7.9203 4.8930 47 1 2.9885 10.1289 3.7308 48 1 4.0578 13.1977 2.9779 49 1 -0.1212 3.7488 2.7968 50 1 1.5566 4.1335 3.2720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098618900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:34 Heat of formation + Delta-G solvation = 45.026729 kcal Electronic energy + Delta-G solvation = -28955.728994 eV Core-core repulsion = 25019.353611 eV Total energy + Delta-G solvation = -3936.375383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.35134 -41.48069 -39.15694 -36.84983 -36.79709 -35.24595 -33.71393 -32.64053 -31.86157 -31.62600 -30.27474 -28.19663 -27.64569 -25.43302 -24.83646 -23.92705 -23.69892 -22.38107 -22.22340 -21.51506 -19.97844 -19.38750 -18.77339 -18.23599 -17.42016 -16.95936 -16.69162 -16.52391 -16.01158 -15.66262 -15.56314 -15.36945 -15.07099 -14.91692 -14.77660 -14.70239 -14.30600 -13.98406 -13.87078 -13.51127 -13.36987 -13.24064 -13.12107 -12.98337 -12.88430 -12.78101 -12.76025 -12.59711 -12.44740 -12.09418 -12.05989 -11.90500 -11.84534 -11.81249 -11.67054 -11.40330 -11.14346 -10.95847 -10.80388 -10.26764 -9.86143 -9.02336 -7.93145 -5.23553 0.51670 1.13763 1.42114 1.50755 1.51217 1.52712 1.61499 1.90373 2.59597 3.00488 3.09032 3.34466 3.42292 3.52771 3.66743 3.75378 3.82039 3.89290 3.93311 4.07126 4.19169 4.23401 4.26429 4.33596 4.35553 4.46367 4.49861 4.52715 4.55538 4.63276 4.66630 4.77852 4.80857 4.83440 4.92061 4.94432 5.03999 5.09097 5.09213 5.15850 5.20481 5.22289 5.27525 5.38971 5.48751 5.51187 5.61872 6.26479 6.32419 7.03365 7.33572 7.45747 8.03806 8.30686 9.30638 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002177 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.552031 B =12861.086488 C =13650.682672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.094 4.094 4 C -0.113 4.113 5 C -0.148 4.148 6 C 0.532 3.468 7 O -0.584 6.584 8 N -0.618 5.618 9 C 0.102 3.898 10 C -0.138 4.138 11 C 0.130 3.870 12 H 0.149 0.851 13 N -0.277 5.277 14 C -0.017 4.017 15 C -0.034 4.034 16 C 0.235 3.765 17 N -0.737 5.737 18 C -0.244 4.244 19 H 0.083 0.917 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.270 1.270 26 N -0.296 5.296 27 N -0.107 5.107 28 C 0.105 3.895 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.220 0.780 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.372 0.628 48 H 0.251 0.749 49 H 0.080 0.920 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -27.162 -17.715 32.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.115 4.115 4 C -0.151 4.151 5 C -0.206 4.206 6 C 0.323 3.677 7 O -0.463 6.463 8 N -0.352 5.352 9 C -0.020 4.020 10 C -0.176 4.176 11 C 0.029 3.971 12 H 0.167 0.833 13 N -0.071 5.071 14 C -0.168 4.168 15 C -0.172 4.172 16 C 0.107 3.893 17 N -0.380 5.380 18 C -0.376 4.376 19 H 0.101 0.899 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.194 1.194 26 N -0.163 5.163 27 N -0.085 5.085 28 C -0.020 4.020 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.237 0.763 45 H 0.046 0.954 46 H 0.079 0.921 47 H 0.203 0.797 48 H 0.060 0.940 49 H 0.098 0.902 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.129 -27.354 -16.595 32.576 hybrid contribution 1.207 0.862 0.406 1.537 sum -4.922 -26.492 -16.188 31.435 Atomic orbital electron populations 1.21800 0.95602 1.02504 1.01154 1.21529 0.96133 0.94149 1.03106 1.21504 0.98477 0.97643 0.93849 1.21457 0.91942 1.02199 0.99503 1.21805 1.01816 1.01724 0.95211 1.21141 0.75055 0.79739 0.91785 1.90705 1.54490 1.64511 1.36605 1.48552 1.65502 1.08916 1.12233 1.22695 1.05794 0.85429 0.88056 1.23384 1.00345 0.99312 0.94592 1.22968 1.03881 0.85332 0.84931 0.83289 1.47439 1.04999 1.30263 1.24376 1.23598 0.90627 1.01797 1.00826 1.22271 0.93554 1.01713 0.99695 1.18958 0.90783 0.85095 0.94426 1.42479 1.38072 1.13590 1.43874 1.19677 1.07234 0.95884 1.14775 0.89925 1.25632 1.02210 0.99442 0.99593 1.69847 1.42042 1.20272 1.30000 0.85063 0.78502 0.77488 0.78211 1.20853 1.22478 1.19437 1.75035 1.04442 1.16687 1.20094 1.78179 1.20321 1.08405 1.01595 1.22003 1.00331 0.89686 0.89947 0.90898 0.91850 0.95283 0.93179 0.88326 0.86053 0.91058 0.93061 0.92205 0.91816 0.90851 0.86799 0.87256 0.89000 0.85762 0.76326 0.95402 0.92133 0.79693 0.94022 0.90178 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.65 71.98 0.69 -1.04 16 2 C -0.11 -1.25 5.04 30.59 0.15 -1.09 16 3 C -0.09 -0.94 1.63 -11.54 -0.02 -0.96 16 4 C -0.11 -1.05 5.38 30.59 0.16 -0.89 16 5 C -0.15 -0.78 9.67 71.98 0.70 -0.08 16 6 C 0.53 9.51 5.98 87.66 0.52 10.04 16 7 O -0.58 -16.46 16.32 -3.03 -0.05 -16.51 16 8 N -0.62 -8.49 3.33 -811.78 -2.70 -11.19 16 9 C 0.10 0.52 6.17 86.85 0.54 1.05 16 10 C -0.14 -1.21 6.49 31.99 0.21 -1.00 16 11 C 0.13 2.02 3.97 46.19 0.18 2.20 16 12 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 13 N -0.28 -7.29 3.29 -321.53 -1.06 -8.35 16 14 C -0.02 -0.49 10.59 83.49 0.88 0.39 16 15 C -0.03 -1.31 6.61 41.60 0.28 -1.03 16 16 C 0.24 10.02 6.82 85.63 0.58 10.61 16 17 N -0.74 -38.96 5.59 -347.16 -1.94 -40.90 16 18 C -0.24 -13.79 9.99 84.04 0.84 -12.96 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 21 N -0.97 -60.37 13.06 21.65 0.28 -60.08 16 22 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 N -0.30 -12.37 12.41 -48.61 -0.60 -12.98 16 27 N -0.11 -3.75 13.17 37.02 0.49 -3.27 16 28 C 0.11 1.86 6.64 86.73 0.58 2.44 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.03 0.48 7.42 -2.39 -0.02 0.46 16 32 H 0.05 0.84 7.66 -2.38 -0.02 0.82 16 33 H 0.10 0.64 6.33 -2.39 -0.02 0.63 16 34 H 0.12 0.49 7.13 -2.39 -0.02 0.47 16 35 H 0.07 0.60 7.99 -2.39 -0.02 0.59 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.30 6.45 -2.39 -0.02 0.29 16 39 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.11 0.14 7.52 -2.39 -0.02 0.13 16 41 H 0.11 0.04 8.14 -2.38 -0.02 0.03 16 42 H 0.09 0.94 6.39 -2.39 -0.02 0.93 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.22 4.61 7.01 -2.91 -0.02 4.59 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.37 21.34 7.66 -92.70 -0.71 20.63 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.05 1.26 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -82.56 403.44 3.44 -79.12 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.23 Total: 22.11 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.77 Total: 3.70 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -5.53 Total: -136.76 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.05 Total: -16.51 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -82.56 3.44 -79.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.146 kcal (2) G-P(sol) polarization free energy of solvation -82.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds