Wall clock time and date at job start Tue Mar 31 2020 20:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47584 * 2 1 4 4 C 1.52993 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47590 * 54.99651 * 4 3 2 6 6 C 1.53005 * 109.46904 * 294.99834 * 4 3 2 7 7 C 1.50702 * 109.47240 * 174.99787 * 4 3 2 8 8 O 1.21277 * 119.99616 * 26.17614 * 7 4 3 9 9 N 1.34777 * 119.99954 * 206.17569 * 7 4 3 10 10 C 1.47421 * 125.64707 * 174.83157 * 9 7 4 11 11 C 1.54904 * 104.83358 * 204.16860 * 10 9 7 12 12 C 1.55155 * 101.57931 * 322.98920 * 11 10 9 13 13 H 1.08999 * 110.87560 * 277.06462 * 12 11 10 14 14 N 1.46505 * 110.71875 * 153.86946 * 12 11 10 15 15 C 1.35319 * 125.86762 * 331.45662 * 14 12 11 16 16 C 1.35344 * 106.17507 * 180.02562 * 15 14 12 17 17 C 1.50702 * 126.75189 * 180.02562 * 16 15 14 18 18 N 1.46494 * 109.46959 * 94.99859 * 17 16 15 19 19 C 1.36943 * 119.99987 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99909 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99875 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99436 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00246 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47189 * 90.00138 * 23 21 19 25 25 H 1.48506 * 109.47031 * 209.99846 * 23 21 19 26 26 H 1.48493 * 109.47066 * 329.99834 * 23 21 19 27 27 N 1.33775 * 106.49677 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88679 * 0.02562 * 27 16 15 29 29 C 1.47017 * 125.65024 * 354.87894 * 9 7 4 30 30 H 1.09005 * 109.47184 * 59.99987 * 1 2 3 31 31 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47203 * 300.00600 * 1 2 3 33 33 H 1.09003 * 109.47588 * 239.99771 * 2 1 3 34 34 H 1.09005 * 109.47184 * 120.00013 * 2 1 3 35 35 H 1.08993 * 109.46901 * 59.99384 * 3 2 1 36 36 H 1.09006 * 109.46198 * 299.99876 * 3 2 1 37 37 H 1.08996 * 109.47027 * 66.01499 * 6 4 3 38 38 H 1.09002 * 109.47111 * 186.01881 * 6 4 3 39 39 H 1.09001 * 109.46691 * 306.01279 * 6 4 3 40 40 H 1.09008 * 110.36781 * 323.00586 * 10 9 7 41 41 H 1.08997 * 110.36812 * 85.32716 * 10 9 7 42 42 H 1.09002 * 111.00267 * 204.91637 * 11 10 9 43 43 H 1.09002 * 111.01052 * 81.06839 * 11 10 9 44 44 H 1.07997 * 126.90766 * 0.02562 * 15 14 12 45 45 H 1.09002 * 109.47260 * 215.00121 * 17 16 15 46 46 H 1.09000 * 109.46809 * 335.00125 * 17 16 15 47 47 H 0.96996 * 120.00495 * 0.02562 * 18 17 16 48 48 H 0.96998 * 119.99530 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.88483 * 59.48071 * 29 9 7 50 50 H 1.09000 * 109.88019 * 298.31900 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0804 0.8326 1.3065 7 6 4.0723 2.8579 -0.1245 8 8 3.3859 3.7807 0.2602 9 7 5.2843 3.0981 -0.6629 10 6 5.8518 4.4297 -0.9420 11 6 6.8924 4.1901 -2.0642 12 6 7.4813 2.8145 -1.6542 13 1 8.2574 2.9339 -0.8983 14 7 8.0051 2.1054 -2.8244 15 6 7.5595 2.2357 -4.0954 16 6 8.3179 1.4047 -4.8479 17 6 8.2133 1.1876 -6.3355 18 7 9.1731 2.0541 -7.0241 19 6 9.2593 2.0302 -8.3906 20 1 8.6195 1.3729 -8.9606 21 6 10.1691 2.8509 -9.0430 22 7 10.2522 2.8276 -10.3564 23 14 11.2752 3.9883 -8.0571 24 1 12.5355 3.2806 -7.7167 25 1 11.5878 5.1959 -8.8631 26 1 10.5817 4.3929 -6.8080 27 7 9.1794 0.8149 -4.0115 28 7 8.9680 1.2513 -2.8200 29 6 6.2590 2.0755 -1.0699 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9562 -0.8901 37 1 3.8077 -0.2219 1.3463 38 1 5.1651 0.9294 1.3533 39 1 3.6322 1.3561 2.1510 40 1 5.0724 5.1097 -1.2863 41 1 6.3386 4.8288 -0.0522 42 1 7.6613 4.9626 -2.0554 43 1 6.4092 4.1333 -3.0396 44 1 6.7597 2.8743 -4.4401 45 1 8.4335 0.1454 -6.5670 46 1 7.2034 1.4280 -6.6676 47 1 9.7475 2.6447 -6.5122 48 1 10.8877 3.4013 -10.8123 49 1 5.8208 1.4266 -1.8281 50 1 6.5612 1.4861 -0.2043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098645525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:45 Heat of formation + Delta-G solvation = 72.452346 kcal Electronic energy + Delta-G solvation = -28857.611807 eV Core-core repulsion = 24922.425688 eV Total energy + Delta-G solvation = -3935.186119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -43.27134 -40.79925 -38.46805 -36.37893 -35.29382 -34.14792 -32.70174 -32.00270 -30.96390 -30.39945 -29.34023 -27.16497 -26.27931 -25.46684 -23.89573 -22.92713 -22.39072 -21.28990 -20.91063 -20.81161 -19.53782 -18.22625 -17.70642 -17.34274 -16.73229 -16.08357 -15.90442 -15.55808 -14.94380 -14.87534 -14.51548 -14.48891 -14.19188 -14.07293 -13.79735 -13.59373 -13.20938 -13.03368 -12.96573 -12.78449 -12.73952 -12.56870 -12.45045 -12.33113 -12.18168 -11.76002 -11.66616 -11.51708 -11.42054 -11.29416 -11.16444 -10.98853 -10.89644 -10.62982 -10.24258 -10.18664 -10.01131 -9.61032 -9.27912 -9.09863 -8.92059 -7.25770 -5.77505 -3.13505 1.55469 1.92808 2.13730 2.48793 2.67917 3.37558 3.42765 3.46068 3.53745 3.66760 3.97671 4.17772 4.21715 4.28474 4.40654 4.49063 4.59505 4.60698 4.70065 4.74055 4.78008 4.83845 4.94824 5.00724 5.08605 5.12592 5.17187 5.20704 5.24990 5.29952 5.32696 5.38413 5.42434 5.49781 5.52091 5.59664 5.60307 5.66779 5.69833 5.74909 5.84027 5.93504 6.18752 6.50710 6.53842 6.62554 6.85993 7.63603 7.96635 8.41077 8.61007 9.18853 9.91356 10.11075 11.40535 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.002289 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.753431 B =12232.034602 C =12783.327997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.143 4.143 7 C 0.539 3.461 8 O -0.532 6.532 9 N -0.621 5.621 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.137 3.863 13 H 0.131 0.869 14 N -0.295 5.295 15 C -0.041 4.041 16 C -0.008 4.008 17 C 0.237 3.763 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.094 0.906 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.251 5.251 28 N -0.091 5.091 29 C 0.094 3.906 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.189 0.811 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.082 0.918 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.376 -1.315 27.003 31.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.200 4.200 7 C 0.328 3.672 8 O -0.407 6.407 9 N -0.356 5.356 10 C -0.014 4.014 11 C -0.183 4.183 12 C 0.034 3.966 13 H 0.149 0.851 14 N -0.089 5.089 15 C -0.192 4.192 16 C -0.146 4.146 17 C 0.109 3.891 18 N -0.396 5.396 19 C -0.374 4.374 20 H 0.111 0.889 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.118 5.118 28 N -0.070 5.070 29 C -0.031 4.031 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.206 0.794 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.839 -1.642 27.881 32.108 hybrid contribution 0.237 1.525 -0.039 1.544 sum -15.602 -0.116 27.842 31.916 Atomic orbital electron populations 1.21760 0.95565 1.01699 1.02006 1.21586 0.96207 0.96271 1.02264 1.21485 0.91738 0.97233 1.03529 1.21356 0.98089 0.92618 1.00919 0.89005 1.21783 1.01125 1.01565 0.95537 1.20458 0.78927 0.91760 0.76045 1.90721 1.55693 1.46441 1.47866 1.48458 1.16307 1.07538 1.63341 1.22240 0.96167 0.85582 0.97432 1.23328 0.99312 0.95210 1.00480 1.22526 0.96597 0.91456 0.86053 0.85107 1.47156 1.24308 1.29918 1.07525 1.23350 1.05764 1.06160 0.83880 1.22540 0.95300 0.97763 0.98950 1.18926 0.94180 0.95749 0.80292 1.42646 1.44496 1.48048 1.04368 1.19034 1.17775 1.20031 0.80518 0.88870 1.24640 0.99268 0.99735 0.95281 1.69700 1.39382 1.42642 1.06260 0.86543 0.81566 0.81094 0.79265 1.20951 1.21711 1.20643 1.75131 1.20586 1.20962 0.95150 1.78308 1.05462 1.05216 1.17977 1.22352 0.88389 0.91345 1.00989 0.92637 0.92638 0.92674 0.91869 0.91632 0.90726 0.91530 0.90851 0.92307 0.91681 0.89099 0.90413 0.87717 0.88574 0.79399 0.93379 0.93615 0.80499 0.93011 0.89958 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.15 0.37 -0.47 16 2 C -0.13 -0.69 5.69 -26.73 -0.15 -0.85 16 3 C -0.10 -0.70 4.14 -26.73 -0.11 -0.82 16 4 C -0.11 -0.72 2.20 -91.77 -0.20 -0.92 16 5 H 0.09 0.53 7.23 -51.93 -0.38 0.16 16 6 C -0.14 -0.76 8.78 37.16 0.33 -0.43 16 7 C 0.54 4.87 6.94 -10.98 -0.08 4.79 16 8 O -0.53 -6.69 16.51 5.56 0.09 -6.60 16 9 N -0.62 -4.53 3.33 -170.53 -0.57 -5.10 16 10 C 0.11 0.68 6.89 -2.53 -0.02 0.66 16 11 C -0.14 -0.86 6.43 -24.59 -0.16 -1.02 16 12 C 0.14 0.99 4.01 -66.10 -0.27 0.73 16 13 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 14 N -0.29 -3.44 3.30 -52.98 -0.17 -3.62 16 15 C -0.04 -0.54 10.60 -17.05 -0.18 -0.72 16 16 C -0.01 -0.14 6.61 -82.78 -0.55 -0.68 16 17 C 0.24 4.61 6.82 -5.20 -0.04 4.57 16 18 N -0.75 -18.06 5.40 -61.09 -0.33 -18.39 16 19 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 23 Si 0.88 22.49 27.73 -169.99 -4.71 17.78 16 24 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 27 N -0.25 -4.58 12.41 33.29 0.41 -4.17 16 28 N -0.09 -1.40 13.17 60.35 0.79 -0.61 16 29 C 0.09 0.59 6.06 -3.07 -0.02 0.57 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.32 6.70 -51.93 -0.35 -0.03 16 35 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.31 6.87 -51.93 -0.36 -0.05 16 38 H 0.06 0.29 7.25 -51.93 -0.38 -0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.64 8.09 -51.92 -0.42 0.22 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.61 6.27 -51.93 -0.33 0.29 16 44 H 0.19 1.88 6.84 -52.49 -0.36 1.52 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.36 8.81 5.52 -40.82 -0.23 8.58 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.08 0.57 7.56 -51.93 -0.39 0.18 16 50 H 0.09 0.45 7.25 -51.93 -0.38 0.08 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -35.85 401.15 -7.20 -43.06 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.21 Total: 1.55 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.32 Total: -1.51 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.91 Total: -60.32 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.09 Total: -6.60 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.85 -7.20 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.510 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds