Wall clock time and date at job start Tue Mar 31 2020 20:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47584 * 2 1 4 4 C 1.52993 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47590 * 54.99651 * 4 3 2 6 6 C 1.53005 * 109.46904 * 294.99834 * 4 3 2 7 7 C 1.50702 * 109.47240 * 174.99787 * 4 3 2 8 8 O 1.21277 * 119.99616 * 26.17614 * 7 4 3 9 9 N 1.34777 * 119.99954 * 206.17569 * 7 4 3 10 10 C 1.47421 * 125.64707 * 174.83157 * 9 7 4 11 11 C 1.54904 * 104.83358 * 204.16860 * 10 9 7 12 12 C 1.55155 * 101.57931 * 322.98920 * 11 10 9 13 13 H 1.08999 * 110.87560 * 277.06462 * 12 11 10 14 14 N 1.46505 * 110.71875 * 153.86946 * 12 11 10 15 15 C 1.35319 * 125.86762 * 331.45662 * 14 12 11 16 16 C 1.35344 * 106.17507 * 180.02562 * 15 14 12 17 17 C 1.50702 * 126.75189 * 180.02562 * 16 15 14 18 18 N 1.46494 * 109.46959 * 94.99859 * 17 16 15 19 19 C 1.36943 * 119.99987 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99909 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99875 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99436 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00246 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47189 * 90.00138 * 23 21 19 25 25 H 1.48506 * 109.47031 * 209.99846 * 23 21 19 26 26 H 1.48493 * 109.47066 * 329.99834 * 23 21 19 27 27 N 1.33775 * 106.49677 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88679 * 0.02562 * 27 16 15 29 29 C 1.47017 * 125.65024 * 354.87894 * 9 7 4 30 30 H 1.09005 * 109.47184 * 59.99987 * 1 2 3 31 31 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47203 * 300.00600 * 1 2 3 33 33 H 1.09003 * 109.47588 * 239.99771 * 2 1 3 34 34 H 1.09005 * 109.47184 * 120.00013 * 2 1 3 35 35 H 1.08993 * 109.46901 * 59.99384 * 3 2 1 36 36 H 1.09006 * 109.46198 * 299.99876 * 3 2 1 37 37 H 1.08996 * 109.47027 * 66.01499 * 6 4 3 38 38 H 1.09002 * 109.47111 * 186.01881 * 6 4 3 39 39 H 1.09001 * 109.46691 * 306.01279 * 6 4 3 40 40 H 1.09008 * 110.36781 * 323.00586 * 10 9 7 41 41 H 1.08997 * 110.36812 * 85.32716 * 10 9 7 42 42 H 1.09002 * 111.00267 * 204.91637 * 11 10 9 43 43 H 1.09002 * 111.01052 * 81.06839 * 11 10 9 44 44 H 1.07997 * 126.90766 * 0.02562 * 15 14 12 45 45 H 1.09002 * 109.47260 * 215.00121 * 17 16 15 46 46 H 1.09000 * 109.46809 * 335.00125 * 17 16 15 47 47 H 0.96996 * 120.00495 * 0.02562 * 18 17 16 48 48 H 0.96998 * 119.99530 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.88483 * 59.48071 * 29 9 7 50 50 H 1.09000 * 109.88019 * 298.31900 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0804 0.8326 1.3065 7 6 4.0723 2.8579 -0.1245 8 8 3.3859 3.7807 0.2602 9 7 5.2843 3.0981 -0.6629 10 6 5.8518 4.4297 -0.9420 11 6 6.8924 4.1901 -2.0642 12 6 7.4813 2.8145 -1.6542 13 1 8.2574 2.9339 -0.8983 14 7 8.0051 2.1054 -2.8244 15 6 7.5595 2.2357 -4.0954 16 6 8.3179 1.4047 -4.8479 17 6 8.2133 1.1876 -6.3355 18 7 9.1731 2.0541 -7.0241 19 6 9.2593 2.0302 -8.3906 20 1 8.6195 1.3729 -8.9606 21 6 10.1691 2.8509 -9.0430 22 7 10.2522 2.8276 -10.3564 23 14 11.2752 3.9883 -8.0571 24 1 12.5355 3.2806 -7.7167 25 1 11.5878 5.1959 -8.8631 26 1 10.5817 4.3929 -6.8080 27 7 9.1794 0.8149 -4.0115 28 7 8.9680 1.2513 -2.8200 29 6 6.2590 2.0755 -1.0699 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9562 -0.8901 37 1 3.8077 -0.2219 1.3463 38 1 5.1651 0.9294 1.3533 39 1 3.6322 1.3561 2.1510 40 1 5.0724 5.1097 -1.2863 41 1 6.3386 4.8288 -0.0522 42 1 7.6613 4.9626 -2.0554 43 1 6.4092 4.1333 -3.0396 44 1 6.7597 2.8743 -4.4401 45 1 8.4335 0.1454 -6.5670 46 1 7.2034 1.4280 -6.6676 47 1 9.7475 2.6447 -6.5122 48 1 10.8877 3.4013 -10.8123 49 1 5.8208 1.4266 -1.8281 50 1 6.5612 1.4861 -0.2043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098645525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:43 Heat of formation + Delta-G solvation = 48.091705 kcal Electronic energy + Delta-G solvation = -28858.668163 eV Core-core repulsion = 24922.425688 eV Total energy + Delta-G solvation = -3936.242476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -44.36094 -41.44029 -39.12971 -37.02893 -36.90893 -35.21685 -33.85422 -33.18265 -32.04967 -31.56293 -30.01231 -27.91255 -27.62494 -26.08590 -24.67798 -24.37336 -23.42890 -22.27733 -21.78509 -21.56577 -20.12173 -19.91175 -18.73851 -18.06940 -17.57324 -17.06971 -16.53652 -16.46764 -16.19681 -16.06951 -15.66802 -15.41781 -15.02559 -14.91651 -14.77781 -14.43306 -14.27527 -14.13274 -13.95296 -13.64454 -13.51838 -13.37010 -13.24865 -13.17394 -12.93207 -12.89208 -12.78748 -12.63087 -12.20889 -12.12052 -12.09299 -11.92016 -11.83584 -11.80202 -11.77237 -11.47535 -11.15557 -11.01178 -10.80971 -10.28277 -9.87694 -9.31561 -8.01818 -5.35393 0.52194 1.13096 1.34981 1.40636 1.41432 1.47223 1.47806 1.86244 2.48184 2.95771 3.11045 3.25846 3.30652 3.50757 3.67658 3.72425 3.81005 3.81991 3.90162 3.94478 4.03712 4.22001 4.24277 4.28783 4.32027 4.34111 4.45414 4.55296 4.57033 4.67904 4.69942 4.77025 4.83162 4.85029 4.86287 4.87466 4.96500 5.03887 5.09359 5.12085 5.15532 5.17774 5.28468 5.38095 5.46454 5.60691 5.76188 6.21572 6.24655 6.98526 7.06350 7.46203 7.81155 8.00627 9.19234 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.002289 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.753431 B =12232.034602 C =12783.327997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.105 0.895 6 C -0.140 4.140 7 C 0.534 3.466 8 O -0.575 6.575 9 N -0.618 5.618 10 C 0.107 3.893 11 C -0.136 4.136 12 C 0.131 3.869 13 H 0.151 0.849 14 N -0.277 5.277 15 C -0.016 4.016 16 C -0.037 4.037 17 C 0.238 3.762 18 N -0.752 5.752 19 C -0.230 4.230 20 H 0.067 0.933 21 C -0.060 4.060 22 N -0.980 5.980 23 Si 0.952 3.048 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.256 1.256 27 N -0.293 5.293 28 N -0.099 5.099 29 C 0.098 3.902 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.222 0.778 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.363 0.637 48 H 0.258 0.742 49 H 0.081 0.919 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.490 -0.804 29.497 33.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.123 0.877 6 C -0.197 4.197 7 C 0.325 3.675 8 O -0.454 6.454 9 N -0.352 5.352 10 C -0.015 4.015 11 C -0.175 4.175 12 C 0.029 3.971 13 H 0.168 0.832 14 N -0.070 5.070 15 C -0.167 4.167 16 C -0.175 4.175 17 C 0.111 3.889 18 N -0.398 5.398 19 C -0.361 4.361 20 H 0.085 0.915 21 C -0.252 4.252 22 N -0.630 5.630 23 Si 0.780 3.220 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.181 1.181 27 N -0.160 5.160 28 N -0.078 5.078 29 C -0.026 4.026 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.238 0.762 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.195 0.805 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.957 -1.157 30.438 34.387 hybrid contribution 0.158 1.323 -0.748 1.528 sum -15.800 0.166 29.689 33.632 Atomic orbital electron populations 1.21781 0.95696 1.02082 1.01689 1.21565 0.96106 0.95268 1.02950 1.21431 0.92226 0.97902 1.02136 1.21390 0.97670 0.91415 1.02171 0.87730 1.21784 1.01476 1.02162 0.94288 1.20876 0.78973 0.92219 0.75441 1.90702 1.56945 1.47802 1.49921 1.48478 1.16005 1.08324 1.62399 1.22317 0.96002 0.85067 0.98129 1.23329 0.99321 0.94672 1.00132 1.22954 0.97466 0.91690 0.84980 0.83173 1.47436 1.22780 1.28506 1.08325 1.23657 1.04881 1.04440 0.83719 1.22183 0.97323 1.00191 0.97827 1.18920 0.93777 0.94106 0.82135 1.42666 1.45493 1.48765 1.02901 1.19045 1.16281 1.18343 0.82393 0.91501 1.25415 1.01412 1.02101 0.96273 1.69865 1.40783 1.44221 1.08180 0.85459 0.79275 0.78721 0.78580 1.21324 1.21791 1.18086 1.75077 1.22075 1.22593 0.96234 1.78217 1.06594 1.06088 1.16888 1.22373 0.87619 0.90936 1.01676 0.93193 0.91874 0.92829 0.91432 0.90573 0.92128 0.92977 0.89359 0.91535 0.92582 0.89972 0.89183 0.86243 0.88630 0.76196 0.94670 0.91606 0.80455 0.93290 0.90088 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.17 5.69 30.59 0.17 -0.99 16 3 C -0.10 -1.30 4.14 30.59 0.13 -1.18 16 4 C -0.11 -1.22 2.20 -11.54 -0.03 -1.24 16 5 H 0.10 0.94 7.23 -2.39 -0.02 0.92 16 6 C -0.14 -1.18 8.78 71.98 0.63 -0.55 16 7 C 0.53 8.91 6.94 87.66 0.61 9.52 16 8 O -0.57 -14.31 16.51 -3.02 -0.05 -14.36 16 9 N -0.62 -7.45 3.33 -811.83 -2.70 -10.15 16 10 C 0.11 1.05 6.89 86.85 0.60 1.65 16 11 C -0.14 -1.10 6.43 31.98 0.21 -0.89 16 12 C 0.13 1.37 4.01 46.18 0.19 1.56 16 13 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 14 N -0.28 -5.51 3.30 -321.54 -1.06 -6.57 16 15 C -0.02 -0.35 10.60 83.49 0.88 0.53 16 16 C -0.04 -1.19 6.61 41.59 0.28 -0.92 16 17 C 0.24 9.01 6.82 85.63 0.58 9.59 16 18 N -0.75 -35.48 5.40 -347.18 -1.87 -37.36 16 19 C -0.23 -13.03 10.47 84.03 0.88 -12.15 16 20 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.98 -62.57 13.97 21.65 0.30 -62.27 16 23 Si 0.95 46.21 27.73 68.60 1.90 48.11 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 27 N -0.29 -10.27 12.41 -48.60 -0.60 -10.87 16 28 N -0.10 -2.81 13.17 37.02 0.49 -2.32 16 29 C 0.10 0.89 6.06 86.73 0.53 1.42 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.54 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.58 6.70 -2.38 -0.02 0.56 16 35 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 36 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 0.49 6.87 -2.39 -0.02 0.48 16 38 H 0.07 0.46 7.25 -2.39 -0.02 0.44 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.83 6.27 -2.39 -0.01 0.82 16 44 H 0.22 3.41 6.84 -2.91 -0.02 3.39 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.36 16.93 5.52 -92.71 -0.51 16.42 16 48 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.08 0.83 7.56 -2.39 -0.02 0.81 16 50 H 0.11 0.67 7.25 -2.39 -0.02 0.65 16 Total: -1.00 -79.23 401.15 3.61 -75.63 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.37 Total: 17.73 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.83 Total: 2.42 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -5.45 Total: -129.54 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.05 Total: -14.36 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -79.23 3.61 -75.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098645525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.721 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds